TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2542097.2.1
         (887 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN817006.1|CN817006  HRO4527_C01_F01ZS5 Lib AA071E1X Aven...   111   1e-025

>gb|CN817006.1|CN817006 HRO4527_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4527_C01_F01, mRNA sequence
          Length = 558

 Score =  111 bits (238), Expect = 1e-025
 Identities = 44/51 (86%), Positives = 50/51 (98%)
 Frame = +3 / +1

                                                              
Query: 306 GNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 458
           GNAA+DNKK+RI+PRH+LLAIRND+ELG+LL GVTIAHGGVLPNINPVLLP
Sbjct: 67  GNAAKDNKKSRIVPRHLLLAIRNDQELGRLLGGVTIAHGGVLPNINPVLLP 219



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,004,619
Number of Sequences: 8143
Number of extensions: 91637
Number of successful extensions: 1755
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 306769176
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)