TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2521462.2.2
         (1311 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816204.1|CN816204  HRO4518_B02_C04ZS5 Lib AA071E1X Aven...   162   9e-041

>gb|CN816204.1|CN816204 HRO4518_B02_C04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4518_B02_C04, mRNA sequence
          Length = 687

 Score =  162 bits (349), Expect = 9e-041
 Identities = 64/86 (74%), Positives = 72/86 (83%)
 Frame = +1 / -1

                                                                        
Query: 826  RSSTVKIYCPRCEDIYTPRSKYLSNIDGTYFGTTFPHLFLMTYPHLKPQKPLQQYVPRVF 1005
            RSS VKIYCP+CED+Y PRSKY SNIDG YFGTTFPHL+LMTYPHLKPQKP Q+YVPRVF
Sbjct: 687  RSSNVKIYCPKCEDLYYPRSKYQSNIDGAYFGTTFPHLYLMTYPHLKPQKPSQEYVPRVF 508

                                      
Query: 1006 GFKIRKP*QI*RLNV*KVQIAPCYLL 1083
            GFK+ KP*Q+*RL V +      YL+
Sbjct: 507  GFKLHKP*QV*RLKVQQKGSQQSYLI 430




 Score =  135 bits (290), Expect = 1e-032
 Identities = 58/74 (78%), Positives = 61/74 (82%)
 Frame = -2 / +2

                                                                        
Query: 1049 TFNLQICHGLRILNPNTLGTYCCSGFWGFKCGYVIRNKWGNVVPK*VPSMLLRYLDLGV* 870
            TF+LQ C+GL  LNP TLGTY C GFWGFKCGYVIR K GNVVPK* PSMLL YLDLG *
Sbjct: 464  TFSLQTCYGL*SLNPKTLGTYSCDGFWGFKCGYVIRYK*GNVVPK*APSMLL*YLDLG** 643

                          
Query: 869  MSSHLGQ*IFTVLE 828
             SSH GQ*IFT+LE
Sbjct: 644  RSSHFGQ*IFTLLE 685




 Score = 98.7 bits (209), Expect = 2e-021
 Identities = 43/73 (58%), Positives = 54/73 (73%)
 Frame = -1 / +1

                                                                        
Query: 1056 LLYIQPSNLSWLTDFEPKYPGNVLLQRLLGLQMRVCHQEQVGECCPKVSPVDVA*IFGSW 877
            LL++Q S+L WL  FE K  G++ L+RLLGLQ+ V HQ QV +CCPKVS +DVA IFGS 
Sbjct: 457  LLHLQSSDLLWLMKFESKNSGDIFLRRLLGLQVWVRHQIQVRKCCPKVSSIDVALIFGSR 636

                         
Query: 876  SVDVFTSRAVNLH 838
             V++F   AVNLH
Sbjct: 637  IVEIFALWAVNLH 675



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 14,929,038
Number of Sequences: 8143
Number of extensions: 226598
Number of successful extensions: 1168
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 474004440
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)