TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2486118.2.1
         (635 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815813.1|CN815813  HRO4510_G06_M12ZS5 Lib AA071E1X Aven...   128   6e-031
gb|CN819884.1|CN819884  HRO4407_C09_F17ZS5 Lib AA069E1X Aven...   125   8e-030
gb|CN819594.1|CN819594  HRO4401_H12_O23ZS5 Lib AA069E1X Aven...    97   3e-021

>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4510_G06_M12, mRNA sequence
          Length = 521

 Score =  128 bits (275), Expect = 6e-031
 Identities = 46/91 (50%), Positives = 66/91 (72%)
 Frame = +2 / +2

                                                                       
Query: 44  VKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGL 223
           ++WT+L+IPP  ++++N++GI  G S  + +    W  L G +FFSFWV+ HLYPF KGL
Sbjct: 8   LQWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGL 187

                                          
Query: 224 MGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
           MGR+ RTPTIV +W+ LL+   SL+WV I+P
Sbjct: 188 MGRQNRTPTIVVLWSVLLASIFSLVWVRIDP 280



>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
           sequence
          Length = 676

 Score =  125 bits (267), Expect = 8e-030
 Identities = 48/87 (55%), Positives = 61/87 (70%)
 Frame = +2 / +1

                                                                       
Query: 56  SLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRR 235
           +L+IPP  I+++N++G+  G S  I S    W  L G +FF+FWV+ HLYPF KGLMGR 
Sbjct: 13  TLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRT 192

                                      
Query: 236 GRTPTIVFVWAGLLSITISLLWVAINP 316
            RTPTIV VWA LL+   SLLWV I+P
Sbjct: 193 NRTPTIVIVWAILLASIFSLLWVRIDP 273



>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
           sequence
          Length = 620

 Score = 96.8 bits (205), Expect = 3e-021
 Identities = 37/56 (66%), Positives = 42/56 (75%)
 Frame = +2 / +2

                                                                   
Query: 149 WSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
           W  L G +FF+FWV+ HLYPF KGLMGR  RTPTIV VWA LL+   SLLWV I+P
Sbjct: 17  WGPLFGKLFFAFWVIVHLYPFLKGLMGRTNRTPTIVIVWAILLASIFSLLWVRIDP 184



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,007,182
Number of Sequences: 8143
Number of extensions: 101516
Number of successful extensions: 1490
Number of sequences better than 1.0e-020: 3
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 207106289
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)