TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2485939.2.1
         (530 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|AJ133638.1|ASA133638  Avena sativa mRNA for myb protein       160   3e-040

>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
          Length = 2287

 Score =  160 bits (345), Expect = 3e-040
 Identities = 59/105 (56%), Positives = 77/105 (73%)
 Frame = +3 / +2

                                                                       
Query: 129 PNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGM 308
           P  +KG W+  ED  L DY+  HG G W+A+    GL R GKSCRLRW N+LRP LK G 
Sbjct: 377 PPLKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGA 556

                                                        
Query: 309 FSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKK 443
           F+PEEE  ++ LH+ +GNKW+R+A +LPGRTDNE+KNYWN+ +K+
Sbjct: 557 FTPEEERLIIQLHSKMGNKWARMAANLPGRTDNEIKNYWNTRIKR 691



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 4,876,247
Number of Sequences: 8143
Number of extensions: 62364
Number of successful extensions: 1713
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 164214454
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)