TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2478113.2.1
         (796 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819616.1|CN819616  HRO4402_B12_C24ZS5 Lib AA069E1X Aven...   138   8e-034
gb|CN821498.1|CN821498  HRO4426_A05_A10ZS5 Lib AA069E1X Aven...   138   8e-034
gb|CN818433.1|CN818433  HRO4460_F10_K20ZS5 Lib AA070E1X Aven...   134   1e-032

>gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4402_B12_C24, mRNA
           sequence
          Length = 769

 Score =  138 bits (297), Expect = 8e-034
 Identities = 53/98 (54%), Positives = 70/98 (71%)
 Frame = -2 / +3

                                                                       
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
           L  ++++L  LAGP V L YPLYASVRA+E+ S +DD+QWL YW+LYSF+TL E+   ++
Sbjct: 66  LKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSSIDDQQWLTYWVLYSFITLFELTFAAV 245

                                                 
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
           I W+P W   KL F  WLVLP F GAA +Y+ FVR  +
Sbjct: 246 IEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 359



>gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4426_A05_A10, mRNA
           sequence
          Length = 839

 Score =  138 bits (297), Expect = 8e-034
 Identities = 53/98 (54%), Positives = 70/98 (71%)
 Frame = -2 / +3

                                                                       
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
           L  ++++L  LAGP V L YPLYASVRA+E+ S +DD+QWL YW+LYSF+TL E+   ++
Sbjct: 60  LKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSSIDDQQWLTYWVLYSFITLFELTFAAV 239

                                                 
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
           I W+P W   KL F  WLVLP F GAA +Y+ FVR  +
Sbjct: 240 IEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 353



>gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4460_F10_K20, mRNA sequence
          Length = 787

 Score =  134 bits (288), Expect = 1e-032
 Identities = 50/85 (58%), Positives = 64/85 (75%)
 Frame = -2 / +1

                                                                       
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
           LAGP V L YPLYASVRA+E+ S++DD+QWL YW+LYSF+TL E+    ++ W+P W   
Sbjct: 28  LAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTFAPILEWLPFWPYG 207

                                    
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
           KL F  WLVLP F GAA++Y+ FVR
Sbjct: 208 KLFFNCWLVLPCFNGAAYVYEHFVR 282



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 8,562,788
Number of Sequences: 8143
Number of extensions: 127182
Number of successful extensions: 1150
Number of sequences better than 1.0e-020: 3
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 269031698
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)