TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478065.2.2
(688 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815714.1|CN815714 HRO4514_G01_M02ZS5 Lib AA071E1X Aven... 296 2e-081
gb|CN815860.1|CN815860 HRO4511_C09_F17ZS5 Lib AA071E1X Aven... 279 4e-076
gb|CN821620.1|CN821620 HRO4408_D02_H04Z Lib AA069E1X Avena ... 221 7e-059
gb|CN816546.1|CN816546 HRO4522_A04_A08ZS5 Lib AA071E1X Aven... 210 1e-055
gb|CN820862.1|CN820862 HRO4420_G10_N20ZS5 Lib AA069E1X Aven... 150 2e-037
>gb|CN815714.1|CN815714 HRO4514_G01_M02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_G01_M02, mRNA sequence
Length = 643
Score = 296 bits (641), Expect = 2e-081
Identities = 126/139 (90%), Positives = 129/139 (92%)
Frame = +1 / +3
Query: 118 RLKMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIG 297
R +MAVPLLT KIVKKR K FKR H DRY LKPSWRRPKGIDSRVRRKFKGCTLMPNIG
Sbjct: 27 RSEMAVPLLTAKIVKKRTKHFKRAHSDRYIGLKPSWRRPKGIDSRVRRKFKGCTLMPNIG 206
Query: 298 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLD 477
YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVS++KRK IVERAAQLD
Sbjct: 207 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSSQKRKVIVERAAQLD 386
Query: 478 IVVTNKLARLRSQEDE*TV 534
IVVTNKLARLRSQEDE* V
Sbjct: 387 IVVTNKLARLRSQEDE*NV 443
Score = 193 bits (416), Expect = 3e-050
Identities = 89/145 (61%), Positives = 107/145 (73%)
Frame = +3 / +2
Query: 99 RRKPLWALEDGGAAVDSEDREEAGQAVQEAPPRPLQVPQAKLAQAQGYRLPCQAEVQGMH 278
R + L + DGGA+ D EDREEA QA+QE P R L PQA+LA A+GY LPC+ +VQGM+
Sbjct: 8 RGRQLSEIRDGGASADGEDREEAYQALQEGP*RSLHRPQAQLAPAKGY*LPCKEKVQGMY 187
Query: 279 LDA*HWIWL*QEDQALSSQQV*EVCRAQCF*AGVAYDAQQDILC*NRTQRVH*EAQGNRG 458
LDA HW+ *QEDQAL +QQV EVCR Q *AGVAYDAQQDILC*+R Q + EA G+ G
Sbjct: 188 LDAQHWLRF*QEDQALPAQQVQEVCRPQRL*AGVAYDAQQDILC*DRAQCLFPEA*GHCG 367
Query: 459 ASCSA*HCGHQ*ACPSPQPGR*VNC 533
A C+A + H+ AC +PQPG *V C
Sbjct: 368 ACCAAGYRCHKQACQAPQPGG*VKC 442
Score = 183 bits (394), Expect = 3e-047
Identities = 80/138 (57%), Positives = 101/138 (73%)
Frame = -2 / -3
Query: 537 RNSLLIFLAAETGKLIGDHNVKLSSSLHDFLALLSGHVVCDFSTVCPVVHHKQLQLRNIV 358
+N LI LAAE GKL+ D++++L S+LH+ L LL +V D ST+CPVVHHKQLQLR++V
Sbjct: 446 KNISLILLAAEPGKLVCDNDIQLRSTLHNDLTLLGRDIVRDLSTICPVVHHKQLQLRDVV 267
Query: 357 HDKLLKLVGKIVPGLLVRAISNVRHQGASLELPPDTGVDTLGPAPAWLEALVAVEVGXXX 178
DKLL+LVG+++PGLLVR ++NV HQG SLEL P TGV+TL PAPA LEA VA+ +G
Sbjct: 266 DDKLLELVGQVMPGLLVRTVTNVGHQGTSLELSPYTGVNTLWPAPAGLEADVAIAMGPLE 87
Query: 177 XXXXXXXXXLSQQRHRHL 124
QQRHRHL
Sbjct: 86 VLGTLLHDLRRQQRHRHL 33
Score = 165 bits (354), Expect(2) = 5e-048
Identities = 74/84 (88%), Positives = 78/84 (92%)
Frame = -3 / -1
Query: 488 VTTMSS*AARSTISLRFLVDTLCAISAQYVLLCIISNSSSETLCTTNFLNLLGR*CLVFL 309
VTT+SS AARST++LRF +TLCAISAQYVLLCIISNSSSETL TTNFLNLLGR*CLVFL
Sbjct: 397 VTTISSCAARSTMTLRFWEETLCAISAQYVLLCIISNSSSETLWTTNFLNLLGR*CLVFL 218
Query: 308 SEPYPMLGIKVHPLNFRLTRESIP 237
SEP PMLGIKVHPLNF LTRESIP
Sbjct: 217 SEP*PMLGIKVHPLNFLLTRESIP 146
Score = 145 bits (312), Expect = 6e-036
Identities = 65/105 (61%), Positives = 74/105 (70%)
Frame = -1 / -2
Query: 535 KQFTHLPGCGDGQAYW*PQCQAEQLAPRFPCAS*WTRCVRFQHSMSCCAS*ATPAQKHCA 356
+ FTH PGCG QA * + A Q AP+ P AS C R QH+MSCCAS*ATPAQ+ C
Sbjct: 444 EHFTHPPGCGAWQACL*QRYPAAQHAPQ*PYASGKRHCARSQHNMSCCAS*ATPAQRRCG 265
Query: 355 RQTS*TCWEDSAWSSCQSHIQC*ASRCIP*TSA*HGSRYPWACAS 221
RQTS*TCW +AWSSCQ+ QC ASR IP*T + HGS+YP A AS
Sbjct: 264 RQTS*TCWAGNAWSSCQNRNQCWASRYIP*TFSLHGSQYPLAGAS 130
Score = 118 bits (253), Expect = 8e-028
Identities = 59/109 (54%), Positives = 65/109 (59%)
Frame = +2 / +1
Query: 236 RVSTPVSGGSSRDAP*CLTLDMALTRRPGTIFPTSLRSLSCTMFLSWSCL*CTTGHTVLK 415
RV TPV G SSRD P*C TL LTRRPG PTS RSLS T LSWSCL*CTTGH VL+
Sbjct: 145 RVLTPV*GESSRDVP*CPTLVTVLTRRPGITCPTSSRSLSSTTSLSWSCL*CTTGHIVLR 324
Query: 416 SHTTCPLRSARKXXXXXXXXXXXXPISLPVSAARKMSKLFLLAVVLEWC 562
S T RS R SLP SAAR+MS++F ++ C
Sbjct: 325 SRTMSLPRSVRSLWSVLRSWISLSQTSLPGSAARRMSEMFFKLLLCLRC 471
Score = 40.9 bits (83), Expect(2) = 5e-048
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -3 / -1
Query: 191 WGLLNCLTRFFTIF*VNSGTAI 126
W LL CL RFFTIF V+ GTAI
Sbjct: 100 WALLKCLVRFFTIFAVSRGTAI 35
>gb|CN815860.1|CN815860 HRO4511_C09_F17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_C09_F17, mRNA sequence
Length = 587
Score = 279 bits (603), Expect = 4e-076
Identities = 118/126 (93%), Positives = 120/126 (95%)
Frame = +1 / +2
Query: 157 VKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPN 336
VKKRVKQFKR H DRY LK SWRRPKGIDSRVRRKFKG TLMPNIGYGSDKKTRHYLPN
Sbjct: 11 VKKRVKQFKRAHSDRYIGLKTSWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHYLPN 190
Query: 337 KFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQ 516
KFKKFVVHN+SELELLMMHNRTYCAEIAHNVSTKKRK+IVERAAQLDIVVTNKLARLRSQ
Sbjct: 191 KFKKFVVHNISELELLMMHNRTYCAEIAHNVSTKKRKDIVERAAQLDIVVTNKLARLRSQ 370
Query: 517 EDE*TV 534
EDE*TV
Sbjct: 371 EDE*TV 388
Score = 177 bits (381), Expect = 2e-045
Identities = 80/125 (64%), Positives = 94/125 (75%)
Frame = +3 / +1
Query: 159 EEAGQAVQEAPPRPLQVPQAKLAQAQGYRLPCQAEVQGMHLDA*HWIWL*QEDQALSSQQ 338
EE GQ +QE P RPL PQ LAQA+GY PCQA+VQG H+DA HW+ + QEDQAL S Q
Sbjct: 13 EEEGQTIQEGP*RPLHWPQD*LAQAEGY*FPCQAKVQGSHVDAQHWLRVRQEDQALPS*Q 192
Query: 339 V*EVCRAQCF*AGVAYDAQQDILC*NRTQRVH*EAQGNRGASCSA*HCGHQ*ACPSPQPG 518
V EV Q F*AG A+DAQQD+LC +R QR+H EAQG+R A C+A*H GHQ AC +PQPG
Sbjct: 193 VQEVRCPQHF*AGAAHDAQQDLLCGDRPQRLHEEAQGHR*ACCAA*HRGHQQACQAPQPG 372
Query: 519 R*VNC 533
*V+C
Sbjct: 373 G*VDC 387
Score = 174 bits (374), Expect(2) = 1e-047
Identities = 78/117 (66%), Positives = 95/117 (81%)
Frame = -2 / -2
Query: 537 RNSLLIFLAAETGKLIGDHNVKLSSSLHDFLALLSGHVVCDFSTVCPVVHHKQLQLRNIV 358
+NSLLI LAAE GKL+GDH+VKL S+L+D LALL G VV D TV PVVHH+QLQLRN+V
Sbjct: 391 KNSLLILLAAEPGKLVGDHDVKLRSTLNDVLALLRGDVVGDLRTVGPVVHHEQLQLRNVV 212
Query: 357 HDKLLKLVGKIVPGLLVRAISNVRHQGASLELPPDTGVDTLGPAPAWLEALVAVEVG 187
++LL+LV K++PGLLV ++NV HQ SLEL PDTG++TL PAPA LEA VAV +G
Sbjct: 211 DNELLELVRKVMPGLLV*PVANVGHQRDSLELSPDTGINTLRPAPASLEANVAVAMG 41
Score = 159 bits (341), Expect = 6e-040
Identities = 68/105 (64%), Positives = 77/105 (73%)
Frame = -1 / -1
Query: 535 KQFTHLPGCGDGQAYW*PQCQAEQLAPRFPCAS*WTRCVRFQHSMSCCAS*ATPAQKHCA 356
+Q TH PGCG QA W*P+CQA Q A R PCAS W RC R HS SCCAS*A PAQK C
Sbjct: 389 EQSTHPPGCGAWQACW*PRCQAAQHAQRCPCASSWRRCGRSPHSRSCCAS*AAPAQKCCG 210
Query: 355 RQTS*TCWEDSAWSSCQSHIQC*ASRCIP*TSA*HGSRYPWACAS 221
++TS*TC E +AWSSC + QC AS +P*T A*HG++YP ACAS
Sbjct: 209 QRTS*TC*EGNAWSSCLTRSQCWAST*LP*TFA*HGNQYPSACAS 75
Score = 154 bits (331), Expect = 1e-038
Identities = 74/99 (74%), Positives = 79/99 (79%)
Frame = -3 / -3
Query: 533 TVYXXXXXXXXXXXLVTTMSS*AARSTISLRFLVDTLCAISAQYVLLCIISNSSSETLCT 354
TVY LVTTMSS AARST+SLRF V+TL AISAQ VLLCI+S+SSSE L T
Sbjct: 387 TVYSSSWLRSLASLLVTTMSSCAARSTMSLRFFVETLWAISAQ*VLLCIMSSSSSEMLWT 208
Query: 353 TNFLNLLGR*CLVFLSEPYPMLGIKVHPLNFRLTRESIP 237
TNFLNLLGR*CLVFLS+P PMLGI V PLNFRLTRESIP
Sbjct: 207 TNFLNLLGR*CLVFLSDP*PMLGINVTPLNFRLTRESIP 91
Score = 117 bits (251), Expect = 1e-027
Identities = 58/101 (57%), Positives = 63/101 (62%)
Frame = +2 / +3
Query: 236 RVSTPVSGGSSRDAP*CLTLDMALTRRPGTIFPTSLRSLSCTMFLSWSCL*CTTGHTVLK 415
RV PVSG SSR++ *C TL TRRPG F TS RS T FLSWSC *CTTG TV +
Sbjct: 90 RVLIPVSGESSRESR*CPTLATGQTRRPGITFLTSSRSSLSTTFLSWSCS*CTTGPTVRR 269
Query: 416 SHTTCPLRSARKXXXXXXXXXXXXPISLPVSAARKMSKLFL 538
S TT P RSAR P SLP SAAR+MS+LFL
Sbjct: 270 SPTTSPRRSARTSLSVLRSLTSWSPTSLPGSAARRMSRLFL 392
Score = 30.4 bits (60), Expect(2) = 1e-047
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3 / -3
Query: 191 WGLLNCLTRFFTI 153
W LLNCLT FFT+
Sbjct: 45 WALLNCLTLFFTL 7
>gb|CN821620.1|CN821620 HRO4408_D02_H04Z Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D02_H04, mRNA
sequence
Length = 477
Score = 221 bits (478), Expect = 7e-059
Identities = 93/97 (95%), Positives = 96/97 (98%)
Frame = +1 / +2
Query: 244 DSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAH 423
DSRVRRKFKG TLMPNIGYGSDKKTRHYLPNKFKKFVVHN+SELELLMMHNRTYCAEIAH
Sbjct: 11 DSRVRRKFKGVTLMPNIGYGSDKKTRHYLPNKFKKFVVHNISELELLMMHNRTYCAEIAH 190
Query: 424 NVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE*TV 534
NVSTKKRK+IVERAAQLDIVVTNKLARLRSQEDE*+V
Sbjct: 191 NVSTKKRKDIVERAAQLDIVVTNKLARLRSQEDE*SV 301
Score = 148 bits (317), Expect = 1e-036
Identities = 71/97 (73%), Positives = 77/97 (79%)
Frame = -3 / -1
Query: 533 TVYXXXXXXXXXXXLVTTMSS*AARSTISLRFLVDTLCAISAQYVLLCIISNSSSETLCT 354
T+Y LVTTMSS AARST+SLRF V+TL AISAQ VLLCI+S+SSSE L T
Sbjct: 300 TLYSSSWLRSLASLLVTTMSSCAARSTMSLRFFVETLWAISAQ*VLLCIMSSSSSEMLWT 121
Query: 353 TNFLNLLGR*CLVFLSEPYPMLGIKVHPLNFRLTRES 243
TNFLNLLGR*CLVFLS+P PMLGI V PLNFRLTRES
Sbjct: 120 TNFLNLLGR*CLVFLSDP*PMLGINVTPLNFRLTRES 10
Score = 144 bits (309), Expect = 1e-035
Identities = 63/98 (64%), Positives = 80/98 (81%)
Frame = -2 / -3
Query: 537 RNSLLIFLAAETGKLIGDHNVKLSSSLHDFLALLSGHVVCDFSTVCPVVHHKQLQLRNIV 358
+N+LLI LAAE GKL+GDH+VKL S+L+D LALL G VV + TV PVVHH+QLQLR++V
Sbjct: 304 KNTLLILLAAEPGKLVGDHDVKLRSTLNDVLALLRGDVVGNLRTVGPVVHHEQLQLRDVV 125
Query: 357 HDKLLKLVGKIVPGLLVRAISNVRHQGASLELPPDTGV 244
+KLL+LV K++PGLLV ++NV HQ SLEL PDTG+
Sbjct: 124 DNKLLELVRKVMPGLLV*PVANVGHQCDSLELSPDTGI 11
Score = 140 bits (301), Expect = 2e-034
Identities = 60/94 (63%), Positives = 68/94 (72%)
Frame = -1 / -2
Query: 526 THLPGCGDGQAYW*PQCQAEQLAPRFPCAS*WTRCVRFQHSMSCCAS*ATPAQKHCARQT 347
TH PGCG QA W*P+CQA Q A R PCAS W RC + HS SCCAS*A PAQ+ C +QT
Sbjct: 293 THPPGCGAWQACW*PRCQAAQHAQRCPCASSWRRCGQSPHSRSCCAS*AAPAQRCCGQQT 114
Query: 346 S*TCWEDSAWSSCQSHIQC*ASRCIP*TSA*HGS 245
S*TC E +AWSSC + QC AS +P*T A*HG+
Sbjct: 113 S*TC*EGNAWSSCLTRSQCWASM*LP*TFA*HGN 12
Score = 138 bits (296), Expect = 9e-034
Identities = 61/95 (64%), Positives = 72/95 (75%)
Frame = +3 / +1
Query: 249 PCQAEVQGMHLDA*HWIWL*QEDQALSSQQV*EVCRAQCF*AGVAYDAQQDILC*NRTQR 428
PCQA+VQG H+DA HW+ + QEDQAL S QV EVC Q *AG A+DAQQD+LC + QR
Sbjct: 16 PCQAKVQGSHIDAQHWLRVRQEDQALPS*QVQEVCCPQHL*AGAAHDAQQDLLCGDCPQR 195
Query: 429 VH*EAQGNRGASCSA*HCGHQ*ACPSPQPGR*VNC 533
+H EAQG+R A C+A*H GHQ AC +PQPG *V C
Sbjct: 196 LHEEAQGHR*ACCAA*HRGHQQACQAPQPGG*VEC 300
Score = 110 bits (234), Expect = 3e-025
Identities = 54/97 (55%), Positives = 60/97 (61%)
Frame = +2 / +3
Query: 248 PVSGGSSRDAP*CLTLDMALTRRPGTIFPTSLRSLSCTMFLSWSCL*CTTGHTVLKSHTT 427
PVSG SSR++ *C TL TRRPG F TS RSL T LSWSC *CTTG TV + TT
Sbjct: 15 PVSGESSRESH*CPTLATGQTRRPGITFLTSSRSLLSTTSLSWSCS*CTTGPTVRRLPTT 194
Query: 428 CPLRSARKXXXXXXXXXXXXPISLPVSAARKMSKLFL 538
P RSAR P SLP SAAR+MS++FL
Sbjct: 195 SPRRSARTSLSVLRSLTSWSPTSLPGSAARRMSRVFL 305
>gb|CN816546.1|CN816546 HRO4522_A04_A08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_A04_A08, mRNA sequence
Length = 639
Score = 210 bits (454), Expect = 1e-055
Identities = 90/97 (92%), Positives = 92/97 (94%)
Frame = +1 / +1
Query: 271 GCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKE 450
G TLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST+KRK
Sbjct: 1 GVTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTQKRKT 180
Query: 451 IVERAAQLDIVVTNKLARLRSQEDE*TVSTSSSFGMV 561
IVERAAQLDIVVTNKLARLRSQEDE* VS SS+FG V
Sbjct: 181 IVERAAQLDIVVTNKLARLRSQEDE*NVSNSSAFGWV 291
Score = 162 bits (349), Expect = 4e-041
Identities = 75/95 (78%), Positives = 78/95 (82%)
Frame = -3 / -2
Query: 560 TIPKLLLVETVYXXXXXXXXXXXLVTTMSS*AARSTISLRFLVDTLCAISAQYVLLCIIS 381
T PK LL+ET + LVTTMSS AARSTI LRF VDTLCAISAQYVLLCIIS
Sbjct: 290 THPKALLLETFHSSSWLRSLASLLVTTMSSWAARSTIVLRFCVDTLCAISAQYVLLCIIS 111
Query: 380 NSSSETLCTTNFLNLLGR*CLVFLSEPYPMLGIKV 276
+SSSETLCTTNFLNLLGR*CLVFLSEPYPMLGIKV
Sbjct: 110 SSSSETLCTTNFLNLLGR*CLVFLSEPYPMLGIKV 6
Score = 147 bits (315), Expect = 2e-036
Identities = 59/94 (62%), Positives = 70/94 (74%)
Frame = -1 / -3
Query: 559 PFQNYC**KQFTHLPGCGDGQAYW*PQCQAEQLAPRFPCAS*WTRCVRFQHSMSCCAS*A 380
P Q + ++FT PGCG +A W*P+C+A + AP CAS WTRCVR +HS SCCAS*A
Sbjct: 289 PIQKHYCWRRFTRPPGCGAWRACW*PRCRAGRHAPLSSCASAWTRCVRSRHSTSCCAS*A 110
Query: 379 TPAQKHCARQTS*TCWEDSAWSSCQSHIQC*ASR 278
PAQ+HCA QTS*TCW SAWSSCQ+ I+C ASR
Sbjct: 109 APAQRHCAPQTS*TCWAGSAWSSCQNRIRCWASR 8
Score = 145 bits (312), Expect = 6e-036
Identities = 62/95 (65%), Positives = 76/95 (80%)
Frame = -2 / -1
Query: 555 SKTTASRNSLLIFLAAETGKLIGDHNVKLSSSLHDFLALLSGHVVCDFSTVCPVVHHKQL 376
SK+T + L+ LAAE G+L+GDH+V+L +LH LALL GHVVCD TV PVVHHKQL
Sbjct: 285 SKSTTVGDVSLVLLAAEPGELVGDHDVELGGTLHYRLALLRGHVVCDLGTVRPVVHHKQL 106
Query: 375 QLRNIVHDKLLKLVGKIVPGLLVRAISNVRHQGAS 271
QLR+IVH KLL+LVG++VPGLLVR +S+V HQG S
Sbjct: 105 QLRDIVHHKLLELVGQVVPGLLVRTVSDVGHQGDS 1
Score = 118 bits (252), Expect = 1e-027
Identities = 54/95 (56%), Positives = 62/95 (65%)
Frame = +2 / +2
Query: 272 DAP*CLTLDMALTRRPGTIFPTSLRSLSCTMFLSWSCL*CTTGHTVLKSHTTCPLRSARK 451
++P*C T D LTRRPGT PTS RSL CTM LSWSCL*CTTG TV +SHTTCP RSAR+
Sbjct: 2 ESP*CPTSDTVLTRRPGTTCPTSSRSLWCTMSLSWSCL*CTTGRTVPRSHTTCPRRSARR 181
Query: 452 XXXXXXXXXXXXPISLPVSAARKMSKLFLLAVVLE 556
P S P SAAR+ S+ V+L+
Sbjct: 182 *WSVPPSSTSWSPTSSPGSAARRTSETSPTVVLLD 286
Score = 117 bits (251), Expect = 1e-027
Identities = 55/81 (67%), Positives = 60/81 (74%)
Frame = +3 / +3
Query: 276 HLDA*HWIWL*QEDQALSSQQV*EVCRAQCF*AGVAYDAQQDILC*NRTQRVH*EAQGNR 455
HLDA H I *QEDQAL +QQV EVC AQC *AG AYDAQQD+LC +RTQRVH EAQ +
Sbjct: 6 HLDAQHRIRF*QEDQALPAQQVQEVCGAQCL*AGAAYDAQQDVLCRDRTQRVHAEAQDDS 185
Query: 456 GASCSA*HCGHQ*ACPSPQPG 518
GA A H GHQ A +PQPG
Sbjct: 186 GACRPARHRGHQQARQAPQPG 248
>gb|CN820862.1|CN820862 HRO4420_G10_N20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_G10_N20, mRNA
sequence
Length = 427
Score = 150 bits (323), Expect = 2e-037
Identities = 65/72 (90%), Positives = 69/72 (95%)
Frame = +1 / +3
Query: 340 FKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQE 519
FKKF++HNVSELELLMMHNRTYCAEIAHNVST+KRK IVERAAQLDIVVTNKLARLRSQE
Sbjct: 3 FKKFLLHNVSELELLMMHNRTYCAEIAHNVSTQKRKTIVERAAQLDIVVTNKLARLRSQE 182
Query: 520 DE*TVSTSSSFG 555
DE* VS SS+FG
Sbjct: 183 DE*NVSNSSAFG 218
Score = 109 bits (233), Expect = 4e-025
Identities = 47/72 (65%), Positives = 57/72 (79%)
Frame = -2 / -3
Query: 555 SKTTASRNSLLIFLAAETGKLIGDHNVKLSSSLHDFLALLSGHVVCDFSTVCPVVHHKQL 376
SK+T N L+ LAAE G+L+GDH+V+L +LH LALLSGHV+CD STV PVVHHKQL
Sbjct: 218 SKSTTVGNVSLVLLAAEPGELVGDHDVELGGTLHYRLALLSGHVMCDLSTVRPVVHHKQL 39
Query: 375 QLRNIVHDKLLK 340
QLR+IV KLL+
Sbjct: 38 QLRDIVQQKLLE 3
Score = 107 bits (229), Expect = 2e-024
Identities = 51/72 (70%), Positives = 55/72 (76%)
Frame = -3 / -1
Query: 554 PKLLLVETVYXXXXXXXXXXXLVTTMSS*AARSTISLRFLVDTLCAISAQYVLLCIISNS 375
PK LL+ET + LVTTMSS AARSTI LRF VDTLCAISAQYVLLCIIS+S
Sbjct: 217 PKALLLETFHSSSWLRSLASLLVTTMSSWAARSTIVLRF*VDTLCAISAQYVLLCIISSS 38
Query: 374 SSETLCTTNFLN 339
SSETLC+ NFLN
Sbjct: 37 SSETLCSKNFLN 2
Score = 105 bits (225), Expect = 6e-024
Identities = 45/74 (60%), Positives = 53/74 (71%)
Frame = -1 / -2
Query: 559 PFQNYC**KQFTHLPGCGDGQAYW*PQCQAEQLAPRFPCAS*WTRCVRFQHSMSCCAS*A 380
P Q + K+FT PGCG +A W*P+C+A + AP CAS WTR VR QHS SCCAS*A
Sbjct: 222 PIQKHYCWKRFTRPPGCGAWRACW*PRCRAGRHAPLSSCASEWTRYVRSQHSTSCCAS*A 43
Query: 379 TPAQKHCARQTS*T 338
PAQ+HCA +TS*T
Sbjct: 42 APAQRHCAAKTS*T 1
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,116,543
Number of Sequences: 8143
Number of extensions: 99166
Number of successful extensions: 948
Number of sequences better than 1.0e-020: 6
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 227939466
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)