TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2455940.2.2
         (1190 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AB076979.1|  Avena sativa AsCCOAOMT mRNA for caffeoyl-Co...   270   3e-073

>dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-CoA 3-O-methyltransferase,
           partial cds
          Length = 622

 Score =  270 bits (584), Expect = 3e-073
 Identities = 106/127 (83%), Positives = 116/127 (91%)
 Frame = +3 / +3

                                                                       
Query: 501 LGLPCINKAGVGHKIDFREGPALPVLDDLVADKEQHGSFDFAFVDADKDNYLSYHERLLK 680
           +GLPCI KAGV HKIDFREGPALPVLD L+ D+  HG+FDF FVDADKDNYL+YH+RL+K
Sbjct: 6   IGLPCIEKAGVAHKIDFREGPALPVLDALLEDEANHGTFDFVFVDADKDNYLNYHQRLMK 185

                                                                       
Query: 681 LVRPGGLIGYDNTLWNGSVVLPDDAPMRKYIRFYRDFVLALNSALAADDRVEICQLPVGD 860
           LVR GGL+GYDNTLWNGSVVLP DAPMRKYIR+YRDFVL LN ALAADDRVEICQLPVGD
Sbjct: 186 LVRVGGLLGYDNTLWNGSVVLPADAPMRKYIRYYRDFVLELNKALAADDRVEICQLPVGD 365

                  
Query: 861 GVTLCRR 881
           G+TLCRR
Sbjct: 366 GITLCRR 386




 Score = 59.3 bits (123), Expect(3) = 7e-028
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = -2 / -1

                                         
Query: 772 MYLRMGASSGSTTEPFHSVLS*PMRPPGLT 683
           MYLRMGAS+GSTTEPF SVLS P RPP LT
Sbjct: 277 MYLRMGASAGSTTEPFQSVLSYPSRPPTLT 188




 Score = 55.1 bits (114), Expect(3) = 7e-028
 Identities = 25/43 (58%), Positives = 29/43 (67%)
 Frame = -2 / -1

                                                      
Query: 631 TKAKSNDPCCSLSATRSSRTGSAGPSRKSILWPTPALLMQGRP 503
           TK KS  P  + S++ +S TGSAGPSRKSIL  TPA  M G P
Sbjct: 136 TKTKSKVPWLASSSSSASSTGSAGPSRKSILCATPAFSMHGSP 8




 Score = 50.1 bits (103), Expect(3) = 1e-021
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = -1 / -3

                                       
Query: 761 HGRVVGEHDGAVPQRVVVADEAAGPHQL 678
           HGRV GEHDGAVP+RVVV+ +AA P +L
Sbjct: 266 HGRVGGEHDGAVPERVVVS*QAADPDEL 183




 Score = 48.7 bits (100), Expect(3) = 1e-021
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = -1 / -3

                                           
Query: 608 VLLLVRHEVVQDGERGALAEVDLVAHAGLVDA 513
           V+ LV  + VQ G+RGALAEVDLV HAGL+DA
Sbjct: 113 VVGLVLEQRVQHGQRGALAEVDLVRHAGLLDA 18




 Score = 42.8 bits (87), Expect(3) = 7e-028
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = -2 / -1

                             
Query: 889 HLTRRQSVTPSPTGSWQI 836
           HL RRQSV PSPTGSWQI
Sbjct: 394 HLARRQSVMPSPTGSWQI 341




 Score = 36.8 bits (74), Expect(3) = 1e-021
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = -1 / -3

                              
Query: 890 SLDAAAERDAVADGELADL 834
           SL AAAE DAVADGELADL
Sbjct: 395 SLGAAAECDAVADGELADL 339



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 8,280,648
Number of Sequences: 8143
Number of extensions: 91209
Number of successful extensions: 795
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 425636640
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)