TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441599.2.2
(767 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815413.1|CN815413 HRO4509_D05_G09ZS5 Lib AA071E1X Aven... 90 1e-024
>gb|CN815413.1|CN815413 HRO4509_D05_G09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_D05_G09, mRNA sequence
Length = 773
Score = 89.5 bits (189), Expect(2) = 1e-024
Identities = 34/54 (62%), Positives = 40/54 (74%)
Frame = +1 / -1
Query: 295 QACEHQIVTVDCQPSGPQGGMLVFVSGSIRTGPEEHPIKFSQAFHLLPAAGSFF 456
+ C H +VTVDCQP+GP GGMLVFVSGS++ G EH IKFSQ FHL+P F
Sbjct: 461 EKCLHHVVTVDCQPAGPTGGMLVFVSGSLQAGEGEHQIKFSQMFHLMPVGPGNF 300
Score = 38.6 bits (78), Expect(2) = 1e-024
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1 / -1
Query: 445 GSFFVQNDMFRLNYG*K 495
G+F+VQNDMFRLNYG*+
Sbjct: 308 GNFYVQNDMFRLNYG*E 258
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,021,393
Number of Sequences: 8143
Number of extensions: 105468
Number of successful extensions: 1058
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 258075656
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)