TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440450.2.1
(1291 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820326.1|CN820326 HRO4418_B03_C06ZS5 Lib AA069E1X Aven... 88 8e-039
>gb|CN820326.1|CN820326 HRO4418_B03_C06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_B03_C06, mRNA
sequence
Length = 653
Score = 88.1 bits (186), Expect(2) = 8e-039
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = -2 / +1
Query: 576 GNYISNLVLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNTIDDF 397
G +++LV+SVFHDP + + EHG+ + V RLKLPD V + +Q D+GN+Y TIDD
Sbjct: 274 GKELNDLVMSVFHDPVLGNLEHGVSVDQVASRLKLPDGVARSTVQHLADIGNLYPTIDDN 453
Query: 396 HYKSVRNG* 370
H+KS NG*
Sbjct: 454 HFKSALNG* 480
Score = 88.1 bits (186), Expect(2) = 8e-039
Identities = 34/51 (66%), Positives = 43/51 (84%)
Frame = -2 / +1
Query: 795 NYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHMELPGLKQ 643
+YVIV GGLKGFQGKRH+ AY+VR VTN+N+IT HFL+CI VH++L K+
Sbjct: 19 DYVIVNGGLKGFQGKRHIAAYSVRLVTNYNDITHHFLYCIYVHLDLAKSKR 171
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 13,475,096
Number of Sequences: 8143
Number of extensions: 197817
Number of successful extensions: 942
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 465540075
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)