TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2437629.2.2
         (1041 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820087.1|CN820087  HRO4410_H10_O20ZS5 Lib AA069E1X Aven...   106   3e-039

>gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4410_H10_O20, mRNA
           sequence
          Length = 657

 Score =  106 bits (226), Expect(3) = 3e-039
 Identities = 44/53 (83%), Positives = 47/53 (88%)
 Frame = +1 / +1

                                                                
Query: 52  TSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIGMVV 210
           TS VVLQTDKGDEELCSVYVPTNHLYIGDIFL+NS    RPNLSIREGI ++V
Sbjct: 19  TSNVVLQTDKGDEELCSVYVPTNHLYIGDIFLLNSDEIIRPNLSIREGIEIIV 177




 Score = 84.0 bits (177), Expect(3) = 1e-032
 Identities = 39/53 (73%), Positives = 42/53 (79%)
 Frame = -2 / -2

                                                                
Query: 209 TTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDV 51
           T I IPSR+DK GL     F+RNISP+YR*FVGT TL SSSSPLSV*RTT DV
Sbjct: 176 TIISIPSRMDKFGLMISSLFSRNISPIYR*FVGT*TLQSSSSPLSV*RTTFDV 18




 Score = 68.0 bits (142), Expect(3) = 3e-039
 Identities = 28/32 (87%), Positives = 32/32 (100%)
 Frame = +3 / +1

                                           
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNRM 491
           EIIVSGGMTMPQVIASLEP+P+KSQ+IRLNR+
Sbjct: 166 EIIVSGGMTMPQVIASLEPIPKKSQSIRLNRI 261




 Score = 66.1 bits (138), Expect(3) = 1e-032
 Identities = 28/39 (71%), Positives = 31/39 (79%)
 Frame = -3 / -2

                                                  
Query: 499 HHVILFRRMFWLFRGMGSSDAIT*GMVIPPETIISAETK 383
           H  ILF RM WLF GMGSSDAIT GMVIPP+TIIS  ++
Sbjct: 269 HVFILFSRMLWLFFGMGSSDAITCGMVIPPDTIISIPSR 153




 Score = 26.7 bits (52), Expect(3) = 1e-032
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = -1 / -1

                      
Query: 714 NNIPGHQHDAS 682
           N+IPGH+HDA+
Sbjct: 444 NSIPGHRHDAT 412




 Score = 25.4 bits (49), Expect(3) = 3e-039
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2 / +2

                             
Query: 686 ASC*CPGILFPHKLCYSL 739
           ASC CPGIL     C S+
Sbjct: 416 ASCRCPGILLYDACCSSV 469



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 12,951,322
Number of Sequences: 8143
Number of extensions: 203646
Number of successful extensions: 1607
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 365176890
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)