TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.2
(710 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Aven... 248 4e-069
gb|CN821039.1|CN821039 HRO4422_H02_O04ZS5 Lib AA069E1X Aven... 120 2e-028
>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
Length = 869
Score = 248 bits (535), Expect(2) = 4e-069
Identities = 102/159 (64%), Positives = 124/159 (77%)
Frame = +3 / +3
Query: 63 DNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIA 242
D++S+LVY FSW+VI L +MK +SVGRRRF A FQL FRLIK +IF+ F A++V+LI
Sbjct: 201 DDKSILVYLFSWLVILGALFIMKVISVGRRRFGASFQLFFRLIKFMIFVAFAAVLVVLIL 380
Query: 243 IPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFT 422
I MT+ DIFVCILAF+PTGWG+ A RPV+ GLWGS++ALAR YE++MG+LLFT
Sbjct: 381 ILHMTIRDIFVCILAFLPTGWGILLIAQACRPVLRVAGLWGSVRALARAYEVIMGVLLFT 560
Query: 423 PIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKK 539
PI L+ FVSEFQTRMLFNQAFS GLQISRI G K+
Sbjct: 561 PITVLSWFPFVSEFQTRMLFNQAFSRGLQISRILGGQKE 677
Score = 131 bits (280), Expect = 2e-031
Identities = 69/158 (43%), Positives = 82/158 (51%)
Frame = -2 / -2
Query: 529 PXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXXXXALIEPQSPV 350
P IREI PLLNA LNSI VWNS+T R MGV A +P SP
Sbjct: 667 PPRIREI*SPLLNA*LNSIRVWNSETKGNHDRTVMGVKSSTPMITSYARARARTDPHSPA 488
Query: 349 LWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSW 170
TG A I PHPVG ARMQTN+S VM ++I T+ A N NI I+R S
Sbjct: 487 TRRTGLQACAISSIPHPVGKNARMQTNISRIVM*RMSINTTSTAANATNIMNFISRKNS* 308
Query: 169 NSALNLLLPTDTVFITSKITKITTHEKQ*TSTLWLSLV 56
A NL PTD FI + +IT+HE + T L S++
Sbjct: 307 KLAPNLRRPTDITFIINNAPRITSHENKYTKILLSSVI 194
Score = 28.6 bits (56), Expect(2) = 4e-069
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 15 RYGLVYHLNIT 47
+YGLVYHLNIT
Sbjct: 168 QYGLVYHLNIT 200
>gb|CN821039.1|CN821039 HRO4422_H02_O04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H02_O04, mRNA
sequence
Length = 700
Score = 120 bits (257), Expect = 2e-028
Identities = 52/123 (42%), Positives = 72/123 (58%)
Frame = +3 / +2
Query: 171 QLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHK 350
+LVFR IK L F+ ++L + ++++D+ +C LAF+PTGWGL +RP I
Sbjct: 8 RLVFRFIKLLTFLAVVTSFILLTCLCKLSIMDLIICCLAFIPTGWGLLLIVQVLRPKIEY 187
Query: 351 TGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXG 530
+W I+ +A Y+ MG LLF PIA LA +S QTR+LFN+AFS LQI G
Sbjct: 188 YAIWEPIQVIAHAYDYGMGSLLFFPIAILAWMPIISAIQTRVLFNRAFSRQLQIQPFIVG 367
Query: 531 HKK 539
K
Sbjct: 368 KTK 376
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,209,613
Number of Sequences: 8143
Number of extensions: 81154
Number of successful extensions: 853
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 234946234
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)