TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2405245.2.3
         (2175 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816459.1|CN816459  HRO4521_A01_A01ZS5 Lib AA071E1X Aven...   154   5e-038

>gb|CN816459.1|CN816459 HRO4521_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4521_A01_A01, mRNA sequence
          Length = 435

 Score =  154 bits (331), Expect = 5e-038
 Identities = 61/69 (88%), Positives = 66/69 (95%)
 Frame = +2 / +2

                                                                        
Query: 1331 AHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDSEKLREIGFIVYSIGKPLDAW 1510
            AH +CILTEW+EFK LDYQKIFDNMQKPAFVFDGRN+VD+EKLREIGFI YSIG+PLDAW
Sbjct: 2    AHAVCILTEWEEFKKLDYQKIFDNMQKPAFVFDGRNVVDAEKLREIGFIGYSIGEPLDAW 181

                     
Query: 1511 LKDMPAVA* 1537
            LKDMPAVA*
Sbjct: 182  LKDMPAVA* 208




 Score =  132 bits (282), Expect = 3e-031
 Identities = 59/70 (84%), Positives = 61/70 (87%)
 Frame = -1 / -1

                                                                        
Query: 1539 D*ATAGMSLSQASSGLPME*TMKPISLSFSESTMLRPSKTKAGFCMLSKIFW*SRVLNSS 1360
            +*ATAGMSLS ASSG PME* MKPISLSFS ST LRPSKTKAGFCMLSKIFW*S  LNSS
Sbjct: 210  N*ATAGMSLSHASSGSPME*PMKPISLSFSASTTLRPSKTKAGFCMLSKIFW*SSFLNSS 31

                      
Query: 1359 HSVRMHSPWA 1330
            HSVRM + WA
Sbjct: 30   HSVRMQTAWA 1




 Score =  116 bits (248), Expect = 1e-026
 Identities = 48/69 (69%), Positives = 60/69 (86%)
 Frame = -3 / -3

                                                                        
Query: 1537 LGDRGHVLEPGVERLADGVDDEADLPQLLGVDDVAAVEDEGGLLHVVEDLLVVQGLELVP 1358
            L D GHVLEP +ERLADGV DEA+LP+LL +++VA ++D+GGLLHVVEDLLVVQ LEL+P
Sbjct: 208  LSDSGHVLEPRIERLADGVADEANLPELLSINNVAPIKDKGGLLHVVEDLLVVQLLELLP 29

                     
Query: 1357 LGQDAQPVG 1331
            LG+DA  +G
Sbjct: 28   LGEDADGMG 2



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 24,243,484
Number of Sequences: 8143
Number of extensions: 377070
Number of successful extensions: 2040
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 46
effective length of database: 1,192,909
effective search space used: 808792302
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)