TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2405245.2.2
         (616 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816459.1|CN816459  HRO4521_A01_A01ZS5 Lib AA071E1X Aven...   157   2e-039
>gb|CN816459.1|CN816459 HRO4521_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4521_A01_A01, mRNA sequence
          Length = 435

 Score =  157 bits (337), Expect = 2e-039
 Identities = 62/70 (88%), Positives = 66/70 (94%)
 Frame = +2 / +2

                                                                       
Query: 74  AHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIGKPLDAW 253
           AH VCILTEW+EFK LDYQKIFDNMQKPAFVFDGRN++D EKLREIGFI YSIG+PLDAW
Sbjct: 2   AHAVCILTEWEEFKKLDYQKIFDNMQKPAFVFDGRNVVDAEKLREIGFIGYSIGEPLDAW 181

                     
Query: 254 LKDMPAVA*F 283
           LKDMPAVA*F
Sbjct: 182 LKDMPAVA*F 211

 Score =  132 bits (283), Expect = 5e-032
 Identities = 59/70 (84%), Positives = 60/70 (85%)
 Frame = -2 / -1

                                                                       
Query: 282 N*ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSS 103
           N*ATAGMSLS ASSG PME* MKPISL+FS S  LRPSKTKAGFCMLSKIFW*S  LNSS
Sbjct: 210 N*ATAGMSLSHASSGSPME*PMKPISLSFSASTTLRPSKTKAGFCMLSKIFW*SSFLNSS 31

                     
Query: 102 HSVRMHTPWA 73
           HSVRM T WA
Sbjct: 30  HSVRMQTAWA 1

 Score =  117 bits (251), Expect = 1e-027
 Identities = 49/70 (70%), Positives = 62/70 (88%)
 Frame = -1 / -3

                                                                       
Query: 283 ELSDRGHVLKPGVERLADGVDDEADLPQLLRVDDVAAVEDEGGLLHVVEDLLVVQGLELV 104
           ELSD GHVL+P +ERLADGV DEA+LP+LL +++VA ++D+GGLLHVVEDLLVVQ LEL+
Sbjct: 211 ELSDSGHVLEPRIERLADGVADEANLPELLSINNVAPIKDKGGLLHVVEDLLVVQLLELL 32

                     
Query: 103 PLGQDAHPVG 74
           PLG+DA  +G
Sbjct: 31  PLGEDADGMG 2
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,692,104
Number of Sequences: 8143
Number of extensions: 92977
Number of successful extensions: 1189
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 198527922
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)