TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405245.2.2
(616 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816459.1|CN816459 HRO4521_A01_A01ZS5 Lib AA071E1X Aven... 157 2e-039
>gb|CN816459.1|CN816459 HRO4521_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_A01_A01, mRNA sequence
Length = 435
Score = 157 bits (337), Expect = 2e-039
Identities = 62/70 (88%), Positives = 66/70 (94%)
Frame = +2 / +2
Query: 74 AHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIGKPLDAW 253
AH VCILTEW+EFK LDYQKIFDNMQKPAFVFDGRN++D EKLREIGFI YSIG+PLDAW
Sbjct: 2 AHAVCILTEWEEFKKLDYQKIFDNMQKPAFVFDGRNVVDAEKLREIGFIGYSIGEPLDAW 181
Query: 254 LKDMPAVA*F 283
LKDMPAVA*F
Sbjct: 182 LKDMPAVA*F 211
Score = 132 bits (283), Expect = 5e-032
Identities = 59/70 (84%), Positives = 60/70 (85%)
Frame = -2 / -1
Query: 282 N*ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSS 103
N*ATAGMSLS ASSG PME* MKPISL+FS S LRPSKTKAGFCMLSKIFW*S LNSS
Sbjct: 210 N*ATAGMSLSHASSGSPME*PMKPISLSFSASTTLRPSKTKAGFCMLSKIFW*SSFLNSS 31
Query: 102 HSVRMHTPWA 73
HSVRM T WA
Sbjct: 30 HSVRMQTAWA 1
Score = 117 bits (251), Expect = 1e-027
Identities = 49/70 (70%), Positives = 62/70 (88%)
Frame = -1 / -3
Query: 283 ELSDRGHVLKPGVERLADGVDDEADLPQLLRVDDVAAVEDEGGLLHVVEDLLVVQGLELV 104
ELSD GHVL+P +ERLADGV DEA+LP+LL +++VA ++D+GGLLHVVEDLLVVQ LEL+
Sbjct: 211 ELSDSGHVLEPRIERLADGVADEANLPELLSINNVAPIKDKGGLLHVVEDLLVVQLLELL 32
Query: 103 PLGQDAHPVG 74
PLG+DA +G
Sbjct: 31 PLGEDADGMG 2
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,692,104
Number of Sequences: 8143
Number of extensions: 92977
Number of successful extensions: 1189
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 198527922
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)