TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2306445.2.1
         (1074 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816299.1|CN816299  HRO4519_B10_D19ZS5 Lib AA071E1X Aven...   186   7e-048
gb|CN815253.1|CN815253  HRO4507_F03_L05ZS5 Lib AA071E1X Aven...   116   5e-027

>gb|CN816299.1|CN816299 HRO4519_B10_D19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4519_B10_D19, mRNA sequence
          Length = 678

 Score =  186 bits (400), Expect = 7e-048
 Identities = 79/98 (80%), Positives = 88/98 (89%)
 Frame = -3 / +2

                                                                       
Query: 577 GTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVVDDTLEFLILASDGLWDVVSNEEAVA 398
           GTWRVGGVLAVSRAFGDKLLKQYVV DPEI+EEVVD +LEFLILASDGLWDVVSN+EAVA
Sbjct: 5   GTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDGSLEFLILASDGLWDVVSNDEAVA 184

                                                 
Query: 397 MTRSIQDPEEAAKMLLQEAYKRESSDNITCVVVHFLHG 284
           M + I+DPE+AAK LLQEA +R S+DNIT V+V FL G
Sbjct: 185 MVKPIEDPEQAAKRLLQEASQRGSADNITVVIVRFLDG 298




 Score =  125 bits (268), Expect = 1e-029
 Identities = 59/98 (60%), Positives = 64/98 (65%)
 Frame = +3 / -1

                                                                       
Query: 285 PCKKCTTTQVMLSLLSLLYASCKSIFAASSGS*MDLVIATASSLETTSHSPSLARIRNXX 464
           P +K T T V+LS L L  AS  S+FAA SGS + L +ATASSL TTSHSPSLARIRN  
Sbjct: 297 PSRKRTMTTVILSALPL*EASWSSLFAACSGSSIGLTMATASSLLTTSHSPSLARIRNSS 118

                                                 
Query: 465 XXXXXXXXXXXXXXXYCFKSLSPKARETASTPPTRHVP 578
                          YCFKSLSP ARETA TPPTRHVP
Sbjct: 117 EPSTTSSLISGSATTYCFKSLSPNARETARTPPTRHVP 4



>gb|CN815253.1|CN815253 HRO4507_F03_L05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4507_F03_L05, mRNA sequence
          Length = 562

 Score =  116 bits (249), Expect = 5e-027
 Identities = 48/92 (52%), Positives = 69/92 (75%)
 Frame = -3 / -3

                                                                       
Query: 568 RVGGVLAVSRAFGDKLLKQYVVVDPEIREEVVDDTLEFLILASDGLWDVVSNEEAVAMTR 389
           RV G LAV+RAFGD+ LK+++  +P + EEV+D++ +FLILASDGLW V++N+EAV   +
Sbjct: 461 RVDGQLAVARAFGDRSLKKHLSSEPHVAEEVIDESSDFLILASDGLWKVMTNQEAVDEIK 282

                                           
Query: 388 SIQDPEEAAKMLLQEAYKRESSDNITCVVVHF 293
             +D + AAK L ++A  R S D+I+CVVV F
Sbjct: 281 DFKDAQAAAKHLTEQAVNRRSKDDISCVVVKF 186



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 12,043,902
Number of Sequences: 8143
Number of extensions: 174408
Number of successful extensions: 1061
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 378478035
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)