TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192958.2.2
(1723 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN180781.1|CN180781 As03_isu1961_C ISU cDNA from oat Ave... 375 e-138
gb|CN820951.1|CN820951 HRO4421_G12_M23ZS5 Lib AA069E1X Aven... 42 1e-008
gb|CN817254.1|CN817254 HRO4464_E10_I20ZS5 Lib AA070E1X Aven... 37 4e-005
gb|CN816076.1|CN816076 HRO4516_F09_L18ZS5 Lib AA071E1X Aven... 40 0.002
gb|CN819781.1|CN819781 HRO4404_A05_B10ZS5 Lib AA069E1X Aven... 30 1.2
gb|CN817302.1|CN817302 HRO4464_H07_O14ZS5 Lib AA070E1X Aven... 26 1.5
gb|BE439296.1|BE439296 CDO675_WHE05E02F ITEC CDO Oat cDNA L... 29 1.7
gb|CN814680.1|CN814680 HRO4501_D01_G01ZS5 Lib AA071E1X Aven... 29 1.7
gb|CN816229.1|CN816229 HRO4518_D05_G10ZS5 Lib AA071E1X Aven... 29 1.7
gb|CN819772.1|CN819772 HRO4403_H08_P15ZS5 Lib AA069E1X Aven... 29 2.3
gb|CN820246.1|CN820246 HRO4417_B10_C19ZS5 Lib AA069E1X Aven... 29 2.3
gb|CN820320.1|CN820320 HRO4418_A08_A16ZS5 Lib AA069E1X Aven... 29 3.2
gb|CN815683.1|CN815683 HRO4514_D04_G08ZS5 Lib AA071E1X Aven... 28 4.4
gb|CN820982.1|CN820982 HRO4422_B09_C18ZS5 Lib AA069E1X Aven... 28 4.4
gb|CN816056.1|CN816056 HRO4516_D07_H14ZS5 Lib AA071E1X Aven... 28 6.0
gb|CN818815.1|CN818815 HRO4473_G04_XXXZS5 Lib AA070E1X Aven... 26 6.7
gb|CN814929.1|CN814929 HRO4504_A07_B14ZS5 Lib AA071E1X Aven... 27 8.3
gb|CN815085.1|CN815085 HRO4505_F12_K23ZS5 Lib AA071E1X Aven... 27 8.3
gb|CN815192.1|CN815192 HRO4506_H07_O14ZS5 Lib AA071E1X Aven... 27 8.3
gb|CN815613.1|CN815613 HRO4513_F03_K05ZS5 Lib AA071E1X Aven... 27 8.3
gb|CN816404.1|CN816404 HRO4520_D04_H08ZS5 Lib AA071E1X Aven... 27 8.3
gb|CN817725.1|CN817725 HRO4461_E10_J19ZS5 Lib AA070E1X Aven... 27 8.3
gb|CN818322.1|CN818322 HRO4470_A02_B04ZS5 Lib AA070E1X Aven... 27 8.3
gb|CN820298.1|CN820298 HRO4417_G08_M15ZS5 Lib AA069E1X Aven... 27 8.3
gb|CN820341.1|CN820341 HRO4418_C06_E12ZS5 Lib AA069E1X Aven... 27 8.3
gb|CN820987.1|CN820987 HRO4422_C03_E06ZS5 Lib AA069E1X Aven... 27 8.3
gb|CN821189.1|CN821189 HRO4428_E04_J08ZS5 Lib AA069E1X Aven... 27 8.3
>gb|CN180781.1|CN180781 As03_isu1961_C ISU cDNA from oat Avena sativa cDNA clone
As03_isu1961, mRNA sequence
Length = 1004
Score = 375 bits (814), Expect(2) = e-138
Identities = 152/194 (78%), Positives = 171/194 (88%)
Frame = -1 / -1
Query: 985 GMQHSQKITFPGEADEAPDTVTGDIVFVLQQKDHSKFKRKGEDLFYEHTLSLTEALCGFQ 806
GMQHSQKITFPGEADEAPDTVTGDI+FVLQQK+H KFKRKG+DLFYEHTL+LTEALCGFQ
Sbjct: 710 GMQHSQKITFPGEADEAPDTVTGDIIFVLQQKEHPKFKRKGDDLFYEHTLTLTEALCGFQ 531
Query: 805 FVLTHLDNRQLLIKSDPGEVVKPDQFKAINDEGMPIYQRPFMKGKLYIHFTVEFPDSLAP 626
+VLTHLD RQLLIKS+PGEVVKPD FKAINDEGMP+YQRPFMKGKLYIHFTV+FPDSL P
Sbjct: 530 YVLTHLDGRQLLIKSNPGEVVKPDSFKAINDEGMPMYQRPFMKGKLYIHFTVDFPDSLNP 351
Query: 625 EQCKALETVLPPRPSSKLTDMEIDECEETTMHDVNNIEEEMRRKQAHAAQEAYEEDDEMP 446
+QCKALETVLPP+P S+ TDME+DECEET +D++ EE RR+Q A + E++D
Sbjct: 350 DQCKALETVLPPKPVSQYTDMELDECEETMAYDIDIEEEMRRRQQQQAQEAYDEDEDMPG 171
Query: 445 GGAQRVQCAQQ*AD 404
GG QRVQCAQQ* D
Sbjct: 170 GGGQRVQCAQQ*ED 129
Score = 373 bits (809), Expect(2) = e-108
Identities = 164/260 (63%), Positives = 176/260 (67%)
Frame = +3 / +1
Query: 492 CFLRISSSMLFTXXXXXXXXXXXXXXXXLDEGLGGSTVSRALHCSGASESGNSTVK*MYS 671
C + SS + D GLGG TVSRALH SG SESG STVK M S
Sbjct: 217 CCRLLISSSMSMSYAIVSSHSSSSMSVYCDTGLGGRTVSRALHWSGFSESGKSTVKWM*S 396
Query: 672 FPFMKGLW*IGIPSSFIALNWSGLTTSPGSDLMRSCLLSRCVRTNWNPHSASVRDKVCS* 851
PFM GLW +G+PSS IALN SGLTTSPG DLM SCL S+ VRT W PH ASVR +VCS*
Sbjct: 397 LPFMNGLWYMGMPSSLIALNESGLTTSPGLDLMSSCLPSK*VRTYWKPHRASVRVRVCS* 576
Query: 852 KRSSPFLLNLEWSFCWRTNTMSPVTVSGASSASPGKVIFWLCCIPXXXXXXXXXXXXXXX 1031
KRSSPF LNL SFC RT MSPVTVSGASSASPGKVIFWLCCIP
Sbjct: 577 KRSSPFRLNLGCSFCCRTKIMSPVTVSGASSASPGKVIFWLCCIPFSTTTSRTFFSCTTF 756
Query: 1032 XPLHPGQRSFSLMLSPVPLHSLQGCCICCIMEGPS*RMVTFIPEPWHPGHLIEAPDFEPL 1211
PLH S SLM+SPVPLHSLQGCCIC I+ GP+ R+ T P PW P H IEAPDFEPL
Sbjct: 757 SPLHCPHLSLSLMVSPVPLHSLQGCCIC*IIPGPNWRIWTL*PAPWQPAHFIEAPDFEPL 936
Query: 1212 PLHLEQMTLRERESFFEIPL 1271
PLH EQ TLRERESF ++PL
Sbjct: 937 PLHFEQSTLRERESFLDVPL 996
Score = 177 bits (380), Expect(3) = 4e-072
Identities = 76/132 (57%), Positives = 94/132 (71%)
Frame = -3 / -3
Query: 980 ATQPEDHLPW*S**SA*YRYWRHCIRPPAEGPLQVQKKG*RSLL*AHLVSDRSTMWVPIC 801
A QPEDHLPW *SA*YRYW H +RP AEG QVQ +G R LL*AH S +W+PIC
Sbjct: 705 AAQPEDHLPWRGR*SA*YRYWGHNLRPTAEGASQVQAEGRRPLL*AHSDPH*SPVWLPIC 526
Query: 800 SYTSGQQAASHQIRPW*SC*T*PIQGNKR*GDADLPEAFHEGEAVHSFHGGVPRLAGTRA 621
SY+ G+QAA+HQ++ W SC* * +QG++R G A +PEA HEG+A+H HGG+P LA
Sbjct: 525 SYSFGRQAAAHQVQSWGSC*A*LVQGDQRRGHAHVPEAVHEGQALHPLHGGLPGLAEPGP 346
Query: 620 VQGSRDSTSTKA 585
VQG RD + +A
Sbjct: 345 VQGPRDCPAAQA 310
Score = 159 bits (341), Expect(4) = 1e-052
Identities = 75/121 (61%), Positives = 88/121 (72%)
Frame = +2 / +3
Query: 614 LALLWCQRVGELHREMNVQLPLHERPLVNRHPLIVYCLELVRFNNFTRV*FDEKLPVVQM 793
LAL+ QRV E+HRE++V+L LHERPLV+ H L+V LE VR NNF R+ DE+LP VQM
Sbjct: 339 LALVRVQRVREVHREVDVELALHERPLVHGHALVVDRLERVRLNNFPRIGLDEQLPAVQM 518
Query: 794 CKNKLEPT*CFGQRQGVLIEEIFTLSFELGVVLLLEDEYNVSSNGIRRFISFTREGDLLA 973
KN LE T F + Q VLIEE+ L ELG++LLL DE V SNGIRRFI REGDLLA
Sbjct: 519 SKNILEATQGFSEGQSVLIEEVVALPLELGMLLLL*DEDYVPSNGIRRFIGLAREGDLLA 698
Query: 974 V 976
V
Sbjct: 699 V 701
Score = 133 bits (286), Expect(2) = e-138
Identities = 54/80 (67%), Positives = 62/80 (77%)
Frame = -1 / -1
Query: 1279 DLYNGISKKLSLSRNVIXXXXXXXXXXXGASMRCPGCQGSGMKVTIRQLGPSMIQQMQQP 1100
+LYNG SKKLSLSRNV+ GASM+C GCQG+G KV IRQLGP MIQQMQQP
Sbjct: 1004 ELYNGTSKKLSLSRNVLCSKCNGKGSKSGASMKCAGCQGAGYKVQIRQLGPGMIQQMQQP 825
Query: 1099 CNECKGTGESINEKDRCPGC 1040
CNEC+GTGE+I++KDRC C
Sbjct: 824 CNECRGTGETISDKDRCGQC 765
Score = 103 bits (219), Expect(2) = 7e-031
Identities = 51/87 (58%), Positives = 57/87 (65%)
Frame = +1 / +2
Query: 724 P*IGQV*QLHQGLI**EAACCPDV*EQIGTHIVLRSETRCAHRRDLHPFF*TWSGPSAGG 903
P* Q *QL Q ** AAC P+ *E IG+H L+ + CAHRR P *TW PSA G
Sbjct: 449 P*TSQA*QLPQDWT**AAACRPNE*EHIGSHTGLQ*GSECAHRRGRRPSA*TWDAPSAVG 628
Query: 904 RIQCLQ*RYQALHQLHQGR*SSGCVAF 984
R C Q*RYQALH+ QGR*SSGC A+
Sbjct: 629 RRLCPQ*RYQALHRPRQGR*SSGCAAY 709
Score = 82.6 bits (174), Expect(3) = 5e-033
Identities = 41/71 (57%), Positives = 48/71 (67%)
Frame = -2 / -2
Query: 825 KHYVGSNLFLHIWTTGSFSSNQTLVKLLNLTNSRQ*TMRGCRFTRGLS*RGSCTFISRWS 646
K V SN+FL IWT GS SS+ L KLL+LT SR+ T R C TRG S*R S T SRW+
Sbjct: 550 KPCVASNMFLLIWTAGSCSSSPILGKLLSLTRSRRSTTRACPCTRGRS*RASSTSTSRWT 371
Query: 645 SPTRWHQSSAR 613
S TR ++SAR
Sbjct: 370 SRTR*TRTSAR 338
Score = 77.1 bits (162), Expect(3) = 4e-072
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = -3 / -3
Query: 1274 LQWNLKEALSFAQCHLLQVQGQGLEVWCFNEVPWVPGLRYESHHSSXXXXXXXXXXXALQ 1095
+QW++ EA SF QC LL+VQ QGL+VW F+EV +PG R ++ LQ
Sbjct: 999 VQWHI*EAFSFTQCALLKVQWQGLKVWGFDEVCRLPGSRL*GPNTPVGTRNDSANAATLQ 820
Query: 1094 RVQGDWGEHQREG 1056
VQG+W +HQR+G
Sbjct: 819 *VQGNW*DHQRQG 781
Score = 54.2 bits (112), Expect(4) = 1e-052
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = +1 / +2
Query: 1165 PGTQGTSLKHQTSSPCPCTWSR*HCAKERASLRFHC 1272
PG + TS K QT SPC CT SR HC KE+AS HC
Sbjct: 890 PGNRHTSSKPQTLSPCHCTLSRAHCVKEKAS*MCHC 997
Score = 52.8 bits (109), Expect(3) = 4e-072
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -1 / -1
Query: 544 ETTMHDVNNIEEEMRRKQAHAAQEAYEEDDEMPGG 440
E TM +IEEEMRR+Q AQEAY+ED++MPGG
Sbjct: 272 EETMAYDIDIEEEMRRRQQQQAQEAYDEDEDMPGG 168
Score = 48.3 bits (99), Expect(3) = 5e-033
Identities = 25/47 (53%), Positives = 27/47 (57%)
Frame = -2 / -2
Query: 981 CNTARRSPSLVKLMKRLIPLLETLYXXXXXXXXXXSKERVKISSMST 841
C+TARRSPSL + MKRLIPLL T S R SSMST
Sbjct: 706 CSTARRSPSLARPMKRLIPLLGT*SSSYSRRSIPSSSGRATTSSMST 566
Score = 46.9 bits (96), Expect(2) = 7e-031
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = +1 / +2
Query: 490 LASCASLPRCCSHHA*SSPRIHLSPCLSAWMKALVEVLSREPCTALVPASRGTPP*NEC 666
+A+ +S P C H SP HL+PC +A S PCT AS G+PP*+ C
Sbjct: 215 VAAASSSPPRCQCHTP*SPHTHLAPCPCTATRAWAAGQSLGPCTGPGSASPGSPP*SGC 391
Score = 44.1 bits (90), Expect(3) = 5e-033
Identities = 28/72 (38%), Positives = 34/72 (47%)
Frame = -2 / -2
Query: 1272 TMESQRSSLFXXXXXXXXXXXXXXSLVLQ*GALGARAQV*KSPFVSWGLP*YSRCSSLAT 1093
TM RS LF SL L+* AR V +S + SW *+S+CS+LA
Sbjct: 997 TMAHLRSFLFHAMCSAQSAMARAQSLGLR*SVPVAREPVIRSKYASWDQE*FSKCSNLAM 818
Query: 1092 SARGLGRASTRR 1057
SA L R S R
Sbjct: 817 SAGELVRPSATR 782
Score = 33.6 bits (67), Expect(2) = e-108
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / +1
Query: 405 SAYCCAHCTLWAPP 446
S+YC AHCT W PP
Sbjct: 130 SSYCWAHCTRWPPP 171
Score = 23.5 bits (45), Expect(4) = 1e-052
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / +2
Query: 1057 PSR*CSPQSPCTRC 1098
P R* S Q PCT C
Sbjct: 782 PCR*WSHQFPCTHC 823
Score = 22.6 bits (43), Expect(4) = 1e-052
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2 / +3
Query: 497 PAHLFLDVVHIMHSRL 544
P HL LDV I HS L
Sbjct: 225 PPHLLLDVNVIRHSLL 272
>gb|CN820951.1|CN820951 HRO4421_G12_M23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_G12_M23, mRNA
sequence
Length = 589
Score = 42.3 bits (86), Expect(2) = 1e-008
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -1 / +3
Query: 1630 YYEILGVPKSASQDDLKKAYRKAAIKNHPDK 1538
YY++L V AS D +K +YR+ A+K HPDK
Sbjct: 57 YYKVLEVDYDASDDTIKLSYRRLALKWHPDK 149
Score = 32.2 bits (64), Expect(2) = 1e-008
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1 / +3
Query: 1522 KFKELAQAYEVLSDPEKREIYDQYG 1448
KF+E+ +AY++LSDP R YD G
Sbjct: 177 KFQEINEAYKILSDPITRLEYDFSG 251
>gb|CN817254.1|CN817254 HRO4464_E10_I20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_E10_I20, mRNA sequence
Length = 893
Score = 36.8 bits (74), Expect(2) = 4e-005
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1 / +1
Query: 1648 KSDNTKYYEILGVPKSASQDDLKKAYRKAAIKNHPDKGGD 1529
+ + +YY +LGV A+ +KKAY HPD G+
Sbjct: 1 RHEGRRYYAVLGVMPDATPQQIKKAYYNCMKACHPDLSGN 120
Score = 25.8 bits (50), Expect(2) = 4e-005
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1 / +1
Query: 1504 QAYEVLSDPEKREIYDQ 1454
+ Y VL+DP +R +YD+
Sbjct: 157 EVYTVLTDPIQRAVYDE 207
>gb|CN816076.1|CN816076 HRO4516_F09_L18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_F09_L18, mRNA sequence
Length = 350
Score = 39.6 bits (80), Expect = 0.002
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1 / +3
Query: 727 KAINDEGMPIYQRPFMKGKLYIHFTVEFPDSLAPEQCKALETVL 596
+ I EGMPI + P KG L + F ++FP L +Q ++ +L
Sbjct: 18 EVIPGEGMPIPKEPNKKGNLRVKFNIKFPSRLTSDQKAGIKRLL 149
>gb|CN819781.1|CN819781 HRO4404_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_A05_B10, mRNA
sequence
Length = 770
Score = 29.9 bits (59), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3 / -2
Query: 413 VSRLSSRQLGGVVPLKRGSDLWFCCR 336
V ++S R VP + SDLW CCR
Sbjct: 364 VCKVSPRLFLAKVPTIQSSDLWRCCR 287
>gb|CN817302.1|CN817302 HRO4464_H07_O14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_H07_O14, mRNA sequence
Length = 596
Score = 25.8 bits (50), Expect(2) = 1.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1 / -3
Query: 1165 PGTQGTSLKHQTSSPCPCTWSR*HCA 1242
PG +L+ C C WSR* C+
Sbjct: 192 PGPGSGTLQAPR*GRCSCNWSR*WCS 115
Score = 24.0 bits (46), Expect(2) = 1.5
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3 / -3
Query: 3 FFFFFLYLSGLIN 41
FFFF+LY++ L +
Sbjct: 591 FFFFYLYINNLFS 553
>gb|BE439296.1|BE439296 CDO675_WHE05E02F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO675_WHE05E02, mRNA sequence
Length = 271
Score = 29.5 bits (58), Expect = 1.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3 / -2
Query: 1610 AQVGVPGRPQEGLPQGRYQEPP 1545
A +G PG P G+P GR PP
Sbjct: 237 ANLGYPGWPMGGIPPGRGVPPP 172
>gb|CN814680.1|CN814680 HRO4501_D01_G01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_D01_G01, mRNA sequence
Length = 565
Score = 29.5 bits (58), Expect = 1.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3 / -1
Query: 6 FFFFLYLSGLINQAIPSLLISKLQALHE 89
F F +LSGL +PS ++SKL L E
Sbjct: 106 FSFSRFLSGLTTLGVPSKILSKLPVLLE 23
>gb|CN816229.1|CN816229 HRO4518_D05_G10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_D05_G10, mRNA sequence
Length = 299
Score = 29.5 bits (58), Expect = 1.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1 / +3
Query: 676 GKLYIHFTVEFPDSLAPEQCKALETVLPPR 587
G LY H +V P + AP C A+ V P R
Sbjct: 129 GPLYCHCSVLVPVTRAPLVCSAMNLVYPRR 218
>gb|CN819772.1|CN819772 HRO4403_H08_P15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_H08_P15, mRNA
sequence
Length = 880
Score = 29.0 bits (57), Expect = 2.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2 / -3
Query: 672 SCTFISRWSSPTRWHQSSARLSRQYFHQGLHPS 574
SCT S PT H SAR + + + LHPS
Sbjct: 713 SCTIAGSSSYPTHMHDLSARDAWEPTREILHPS 615
>gb|CN820246.1|CN820246 HRO4417_B10_C19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_B10_C19, mRNA
sequence
Length = 809
Score = 29.0 bits (57), Expect = 2.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1 / +3
Query: 1156 YLSPGTQGTSLKHQTSSPCPC 1218
++ PGT+ L+H T+ PC C
Sbjct: 165 HMHPGTRFCMLQHSTTLPCMC 227
Score = 27.2 bits (53), Expect = 8.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1 / +2
Query: 1156 YLSPGTQGTSLKHQTSSPCPC 1218
++ PGT+ +H T+ PC C
Sbjct: 521 HMHPGTRFCMFQHSTTLPCMC 583
>gb|CN820320.1|CN820320 HRO4418_A08_A16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_A08_A16, mRNA
sequence
Length = 723
Score = 28.6 bits (56), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2 / -1
Query: 353 DHSHALRAPPLPIALMIVCLLLRALH 430
DH + + +PPLP++L I L L L+
Sbjct: 687 DHDNKITSPPLPVSLDICFLTLWCLN 610
>gb|CN815683.1|CN815683 HRO4514_D04_G08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_D04_G08, mRNA sequence
Length = 527
Score = 28.1 bits (55), Expect = 4.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1 / +2
Query: 496 KQAHAAQEAYEEDDEMPGGAQRVQCAQQ 413
K + + EED+E P G +R C+Q+
Sbjct: 146 KSSSKTLDCNEEDEEGPAGVRRRSCSQE 229
>gb|CN820982.1|CN820982 HRO4422_B09_C18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_B09_C18, mRNA
sequence
Length = 510
Score = 28.1 bits (55), Expect = 4.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3 / +2
Query: 3 FFFFFLYLSGLINQAIPSLLISKLQALHEK 92
+FF F L L+ +L S LQ +H+K
Sbjct: 374 YFFLFFLLMSLLGTKCKGILFSFLQFVHQK 463
>gb|CN816056.1|CN816056 HRO4516_D07_H14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_D07_H14, mRNA sequence
Length = 587
Score = 27.6 bits (54), Expect = 6.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3 / -2
Query: 1373 WTLFWRRWWKQQGKKAKEGRRCSP 1302
W WRRW +++ ++ + RR P
Sbjct: 79 WRSSWRRWRRRRCRRGRR*RRSQP 8
>gb|CN818815.1|CN818815 HRO4473_G04_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_G04_XXX, mRNA sequence
Length = 608
Score = 25.8 bits (50), Expect(2) = 6.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2 / -2
Query: 593 WKYCLESLALLWCQRVGELHREMNVQLPL 679
WK L L +WCQ G N+ L L
Sbjct: 388 WKLVLWFLWRIWCQLQGVYFERPNISLGL 302
Score = 21.7 bits (41), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -3
Query: 3 FFFFFLY 23
FFFFFLY
Sbjct: 606 FFFFFLY 586
>gb|CN814929.1|CN814929 HRO4504_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_A07_B14, mRNA sequence
Length = 481
Score = 27.2 bits (53), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2 / -3
Query: 827 GQRQGVLIEEIFTLSFELGVVLL 895
G R VL+E LSFELG +L
Sbjct: 98 GSRLDVLLETFMLLSFELGTEVL 30
>gb|CN815085.1|CN815085 HRO4505_F12_K23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_F12_K23, mRNA sequence
Length = 291
Score = 27.2 bits (53), Expect = 8.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2 / +3
Query: 683 ERPLVNRHPLIVYCLELVRFNNFTRV* 763
+ P+V+R L+ CL+++RF T++*
Sbjct: 114 DHPVVHRCCLLFVCLKVIRFVGLTKL* 194
>gb|CN815192.1|CN815192 HRO4506_H07_O14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_H07_O14, mRNA sequence
Length = 712
Score = 27.2 bits (53), Expect = 8.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3 / -1
Query: 99 YQRCHSDSNATDIAPKCALYRSIPQTFKSPYISKPSL 209
Y+RCH S+ + P +L + K+ + KP+L
Sbjct: 622 YRRCHWTSSPEHMVPTMSLPTHEKSSIKTKVMDKPAL 512
>gb|CN815613.1|CN815613 HRO4513_F03_K05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_F03_K05, mRNA sequence
Length = 635
Score = 27.2 bits (53), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2 / -1
Query: 827 GQRQGVLIEEIFTLSFELGVVLL 895
G R VL+E LSFELG +L
Sbjct: 287 GSRLDVLLETFMLLSFELGTEVL 219
>gb|CN816404.1|CN816404 HRO4520_D04_H08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_D04_H08, mRNA sequence
Length = 726
Score = 27.2 bits (53), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3 / -2
Query: 3 FFFFFLYLSGLINQAIPSLLISKLQ 77
FFFFFL +G N S ++S LQ
Sbjct: 725 FFFFFLV*NGKFNIQSDSFMLSTLQ 651
>gb|CN817725.1|CN817725 HRO4461_E10_J19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E10_J19, mRNA sequence
Length = 702
Score = 27.2 bits (53), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3 / -2
Query: 3 FFFFFLYLSGLINQAIPSLLISKLQALHEKKM 98
FFFFFL + L +P + + +LH +M
Sbjct: 701 FFFFFLEQTYLFYSIVPDKINMEYMSLHMNRM 606
>gb|CN818322.1|CN818322 HRO4470_A02_B04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_A02_B04, mRNA sequence
Length = 468
Score = 27.2 bits (53), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2 / -1
Query: 827 GQRQGVLIEEIFTLSFELGVVLL 895
G R VL+E LSFELG +L
Sbjct: 120 GSRLDVLLETFMLLSFELGTEVL 52
>gb|CN820298.1|CN820298 HRO4417_G08_M15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_G08_M15, mRNA
sequence
Length = 364
Score = 27.2 bits (53), Expect = 8.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / +2
Query: 1577 GLPQGRYQEPPRQGR 1533
G PQGR ++PPR+ R
Sbjct: 47 GAPQGRGRQPPRRAR 91
>gb|CN820341.1|CN820341 HRO4418_C06_E12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_C06_E12, mRNA
sequence
Length = 619
Score = 27.2 bits (53), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2 / -2
Query: 827 GQRQGVLIEEIFTLSFELGVVLL 895
G R VL+E LSFELG +L
Sbjct: 258 GSRLDVLLETFMLLSFELGTEVL 190
>gb|CN820987.1|CN820987 HRO4422_C03_E06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_C03_E06, mRNA
sequence
Length = 649
Score = 27.2 bits (53), Expect = 8.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3 / -1
Query: 267 LCCSKKGYIPRLRGRFSFLFPSSATAKPEI 356
L C G+IPRLR R P +T + E+
Sbjct: 622 LWCMNTGHIPRLRDRLLPHIPQISTFRLEV 533
>gb|CN821189.1|CN821189 HRO4428_E04_J08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_E04_J08, mRNA
sequence
Length = 694
Score = 27.2 bits (53), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2 / -2
Query: 827 GQRQGVLIEEIFTLSFELGVVLL 895
G R VL+E LSFELG +L
Sbjct: 360 GSRLDVLLETFMLLSFELGTEVL 292
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 18,729,711
Number of Sequences: 8143
Number of extensions: 272327
Number of successful extensions: 1639
Number of sequences better than 10.0: 27
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 634155456
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)