TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2192736.2.4
         (838 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816906.1|CN816906  HRO4526_B02_C04ZS5 Lib AA071E1X Aven...   126   4e-033
gb|CN820732.1|CN820732  HRO4414_A03_A06ZS5 Lib AA069E1X Aven...   128   1e-030

>gb|CN816906.1|CN816906 HRO4526_B02_C04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4526_B02_C04, mRNA sequence
          Length = 435

 Score =  126 bits (269), Expect(2) = 4e-033
 Identities = 49/96 (51%), Positives = 69/96 (71%)
 Frame = +1 / +3

                                                                       
Query: 124 KKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGSVWNVTKRAIGVEINKQV 303
           + G + ++  L +Y++GDYVD+  +GA+HKGMPH  YHG+TG V+NV +R++GV +NKQ 
Sbjct: 12  RHGSVRISNVLTSYRVGDYVDIVADGAIHKGMPHNLYHGKTGRVFNVNQRSVGVIVNKQH 191

                                               
Query: 304 NGRIIRKRIHVRVEHVQPSRCTEEFRLRKAKNDQLK 411
             RII KRIHVR +HV+ S   E F  R  +ND+LK
Sbjct: 192 RQRIIPKRIHVRCDHVRISTSREGFLKRCKENDKLK 299




 Score = 30.4 bits (60), Expect(2) = 4e-033
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1 / +1

                                       
Query: 409 KADAKARGEVISTKRQPVGPKPGFMVEG 492
           + +A    + ISTKRQPV P+    V+G
Sbjct: 298 RTEANKSNKRISTKRQPVAPREAHSVKG 381



>gb|CN820732.1|CN820732 HRO4414_A03_A06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4414_A03_A06, mRNA
           sequence
          Length = 406

 Score =  128 bits (274), Expect = 1e-030
 Identities = 53/60 (88%), Positives = 56/60 (93%)
 Frame = +1 / +2

                                                                       
Query: 379 RLRKAKNDQLKADAKARGEVISTKRQPVGPKPGFMVEGATLETVTPIPYDVVNDLKGGY* 558
           RLR  KNDQLKA+AKARGEVISTKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY*
Sbjct: 11  RLRIVKNDQLKAEAKARGEVISTKRQPLGPKPGFMVEGTIIETVTPIPYDVVNDLKGGY* 190



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 8,353,293
Number of Sequences: 8143
Number of extensions: 118806
Number of successful extensions: 1010
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 286074430
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)