TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819995.1|CN819995 HRO4409_F10_K19ZS5 Lib AA069E1X Aven... 94 2e-021
>gb|CN819995.1|CN819995 HRO4409_F10_K19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_F10_K19, mRNA
sequence
Length = 797
Score = 93.6 bits (198), Expect(2) = 2e-021
Identities = 37/97 (38%), Positives = 62/97 (63%)
Frame = +1 / +2
Query: 16 VMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDEVARR 195
+++L ATN P+D+D+A+ RRL +RIY+ LPD ++RK ++ I L + AD DE+A
Sbjct: 155 ILILGATNRPFDLDDAVIRRLPRRIYVGLPDAQNRKKILKILLAKENLEADFKFDELANA 334
Query: 196 TEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMS 306
TEGYSG DL N+C ++ ++ + + + + + S
Sbjct: 335 TEGYSGSDLKNLCIASAYRPVQELLEEEKKGRVSSSS 445
Score = 23.5 bits (45), Expect(2) = 2e-021
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1 / +2
Query: 328 PVAMCDFVEALVKVQKSVS 384
P+ + DF++A KV SVS
Sbjct: 458 PLILDDFIQAKAKVSPSVS 514
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,812,343
Number of Sequences: 8143
Number of extensions: 132654
Number of successful extensions: 1509
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 245902276
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)