TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.2
(1078 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Aven... 431 e-129
gb|CN821143.1|CN821143 HRO4428_A02_B04ZS5 Lib AA069E1X Aven... 250 8e-078
gb|CN819429.1|CN819429 HRO4405_H09_O17ZS5 Lib AA069E1X Aven... 131 2e-049
gb|CN816903.1|CN816903 HRO4526_A11_A22ZS5 Lib AA071E1X Aven... 96 4e-037
gb|CN821305.1|CN821305 HRO4423_G12_N23ZS5 Lib AA069E1X Aven... 109 3e-032
gb|CN821037.1|CN821037 HRO4422_G12_M24ZS5 Lib AA069E1X Aven... 108 6e-032
gb|CN820388.1|CN820388 HRO4418_G08_M16ZS5 Lib AA069E1X Aven... 103 2e-030
>gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_F02_L03, mRNA
sequence
Length = 714
Score = 431 bits (936), Expect(2) = e-129
Identities = 166/190 (87%), Positives = 182/190 (95%)
Frame = +2 / +2
Query: 65 LRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAA 244
LRTFHNQTDNVMCSYLP++NSFNFTKGGLIQLNHGRPQPLQY VNAAFLASLY+DYL++A
Sbjct: 23 LRTFHNQTDNVMCSYLPVYNSFNFTKGGLIQLNHGRPQPLQYVVNAAFLASLYADYLDSA 202
Query: 245 DTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHN 424
DTPGWYCGPNFY T+VLRKFA+SQ+DYILGKNP KMSYVVG+G KYPKR HHRGASIPHN
Sbjct: 203 DTPGWYCGPNFYKTDVLRKFAKSQIDYILGKNPQKMSYVVGYGKKYPKRVHHRGASIPHN 382
Query: 425 GVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAA 604
GV YGCKGG+KWR++KKANPNILVGAMVAGPDR DG+KD+RTNYNYTEPTLAANAGLVAA
Sbjct: 383 GVHYGCKGGFKWRESKKANPNILVGAMVAGPDRHDGFKDIRTNYNYTEPTLAANAGLVAA 562
Query: 605 LISISDIKTG 634
LIS++DI TG
Sbjct: 563 LISLADIDTG 592
Score = 225 bits (485), Expect(3) = 1e-087
Identities = 97/118 (82%), Positives = 103/118 (87%)
Frame = -2 / -1
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
GIDAPL** R GY FP PTT*LIF GFLPRM*S CD ANLRRTSV+*KLGPQYHPGVSA
Sbjct: 375 GIDAPL**TRLGYFFP*PTT*LIFCGFLPRM*SICDFANLRRTSVL*KLGPQYHPGVSAL 196
Query: 237 SR*SLYREARKAALTAY*SG*GLPWLSCISPPLVKLNELNRGRYEHITLSVWLWNVLS 64
SR*S Y+EAR AALT Y*SG*G PWLSCI+PP VKLNEL G+YEH+TLSVWLWNVL+
Sbjct: 195 SR*SAYKEARNAALTTY*SG*GRPWLSCINPPFVKLNELYTGKYEHMTLSVWLWNVLN 22
Score = 158 bits (340), Expect(4) = 1e-058
Identities = 75/128 (58%), Positives = 96/128 (75%)
Frame = -1 / -3
Query: 451 TSFAPILDAVVRYRRASVMRALRVLVSETHNVAHLQWVLAKDVVEL*PGKLAEDFCGVEV 272
TSFA ++D V+R SVM L VL+S T++VAHL WVLA +V++L* KLAED +E+
Sbjct: 409 TSFASVVDTVMRD*CPSVMNTLGVLLSITNDVAHLLWVLA*NVIDL*LCKLAEDIGFIEI 230
Query: 271 RSAVPPRRVCSFKIVAV*RSKESCVDSVLKWLRPSMVELY*SSFSEVE*IE*RQI*AHNI 92
RS VPP + + +I+++ R KE CVD++LKWLRPSMVELY SSF EVE*+ I*AH+I
Sbjct: 229 RSTVPPWCISTVQIISIQRGKECCVDNILKWLRPSMVELYQSSFREVE*VVYW*I*AHDI 50
Query: 91 VGLVVECP 68
V LVVECP
Sbjct: 49 VSLVVECP 26
Score = 158 bits (340), Expect(3) = 2e-061
Identities = 73/122 (59%), Positives = 86/122 (70%)
Frame = +1 / +1
Query: 55 RRNTEDIPQPNRQCYVLISASIQFIQLH*RRTNTTQPWKASATSVRCQRSFPCFSIQRLS 234
R+ +DIPQPN QC+VLI SIQ IQLH RR +T QPW ASATSV CQRS PC + LS
Sbjct: 13 RKKIKDIPQPN*QCHVLIFTSIQLIQLHERRIDTAQPWTASATSVCCQRSIPCLFVC*LS 192
Query: 235 *SCRHAWVVLRT*LLHHRSPPQVCQVTARLHPWQEPIEDELRCGFRKQVPEAPSSQRRVD 414
C + VVL T* L +R PPQVC+VT RLH QEP +DELR K+VP+A SSQR ++
Sbjct: 193 GQC*YTRVVLWT*FL*NRCPPQVCKVTDRLHSRQEPTKDELRRWLWKEVPQACSSQRGIN 372
Query: 415 TS 420
S
Sbjct: 373 PS 378
Score = 150 bits (322), Expect(2) = 1e-038
Identities = 79/155 (50%), Positives = 94/155 (60%)
Frame = -3 / -2
Query: 524 ACRGQPPLLRQGC*GLPSLCPSTCNLLCTHT*RRCEVSTRLCDEGASGTCFRNPXXXXXX 345
AC+GQ PL R+G GLP PS NLLC + R E LCDE A GT F N
Sbjct: 482 ACQGQQPLPRRGYLGLPF*TPSI*NLLCIRSGHRYEGLMPLCDEHAWGTSFHNQRRSSSF 303
Query: 344 XXXXXXXXRAVTWQTCGGLLWCRS*VRSTTQACLQLQDSRCIEKQGKLR*QRTEVAEAFH 165
R+VT QTCGG + R+*V STT D++ ++QG LR*Q TEVAEA H
Sbjct: 302 VGSCLECNRSVTLQTCGGHRFYRN*VHSTTLVYQHCPDNQHTKRQGMLR*QHTEVAEAVH 123
Query: 164 G*VVLVLL**S*MN*IEADMST*HCRFGCGMSSVF 60
G* V +LL *S*M+ I +MST*HC+FGCGMS +F
Sbjct: 122 G*AVSILLS*S*MSCILVNMST*HCQFGCGMSLIF 18
Score = 122 bits (260), Expect(3) = 5e-044
Identities = 63/120 (52%), Positives = 73/120 (60%)
Frame = +3 / +3
Query: 255 GGTADLTSTPQKSSASLPGHSSTTSLARTH*R*ATLWVSETSTRSALITEARRYLTTASS 434
GGT DL S SSASL H S T ARTH R*AT V E ST S ITE + L T S+
Sbjct: 213 GGTVDLISIKPMSSASLQSHRSITF*ARTHKR*ATSLVMERSTPSVFITEGHQSLITVST 392
Query: 435 MGAKEVTSGGTQRRQTLTSLSEQWWLAPTGVMATKMSAXXXXXXXXXXQRMLVWLQR*SL 614
AKEV++GG+ +RQT S S QW LA TG+MA+K+SA Q+ML WLQ * L
Sbjct: 393 TDAKEVSNGGSLKRQTQISSSGQWLLALTGMMASKISAQTIITQSLLLQQMLAWLQH*FL 572
Score = 92.7 bits (196), Expect(3) = 1e-087
Identities = 45/57 (78%), Positives = 48/57 (84%)
Frame = -2 / -1
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV +S EISAAT+PAFAARVGSV*L*FVR SL PS LSGPATIAPTR+ GFAF S
Sbjct: 591 PVSMSAREISAATKPAFAARVGSV*L*FVRISLKPSCLSGPATIAPTRIFGFAFLDS 421
Score = 81.7 bits (172), Expect(3) = 2e-061
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +1 / +1
Query: 460 EGHKEGKP*HPCRSNGGWPRQA*WLQRCPHELQLHGAYSRSECWSGCSAD 609
EG +GKP +P R NG WP QA*WLQR PH+L LH AYS S+CW GCS D
Sbjct: 418 EGV*KGKPKYPRRGNGCWP*QA*WLQRYPHKL*LHRAYSCSKCWLGCSTD 567
Score = 69.3 bits (145), Expect(4) = 1e-058
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = -1 / -3
Query: 634 SGFDIGYRDQRCNQTSIRCESRLRVVVVRADIFVAITPVGASHHCSDKDV 485
+ D+ R+Q CNQ SI C+SRL V++V ADIF AI PV AS+HC D+D+
Sbjct: 592 ASIDVS*RNQCCNQASICCKSRLCVIIVCADIFEAIMPVRASNHCPDEDI 443
Score = 63.8 bits (133), Expect(3) = 5e-044
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3 / +3
Query: 66 *GHSTTKPTMLCAHICLYSIHSTSLKED*YNSTMEG 173
*GHSTTK TM CAHI Y+ HSTS KED*Y+STM+G
Sbjct: 24 *GHSTTKLTMSCAHIYQYTTHSTSRKED*YSSTMDG 131
Score = 44.6 bits (91), Expect(2) = e-129
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = +3 / +3
Query: 648 IRTPSSLRFLRCSQRPRRRHQHGNHREAIPLN 743
IRTPSS F +CSQ P HQ GNH A P N
Sbjct: 609 IRTPSSQLFPQCSQTPHPHHQLGNHERAHP*N 704
Score = 40.5 bits (82), Expect(3) = 1e-087
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -3 / -2
Query: 731 CLSMVSMLMAAAGALGTSEESQRRWCSYRCR 639
C MVS LM +LGT E RRWCSY+ +
Sbjct: 692 CSFMVSKLMVGVWSLGTLGEQLRRWCSYQLK 600
Score = 29.9 bits (59), Expect(3) = 2e-061
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1 / +1
Query: 649 *EHHLLCDSSDVPNAPAAAISMETIE 726
*EHHLL S +VP IS+ET++
Sbjct: 610 *EHHLLSCSPNVPKLHTPTISLETMK 687
Score = 26.3 bits (51), Expect(4) = 1e-058
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2 / -1
Query: 723 YGFHADXXXXXXXXXXXIAEKMVFLSM 643
+GF AD AEKMVFLS+
Sbjct: 684 HGFQADGGGVEFGNIGGTAEKMVFLSI 604
Score = 25.8 bits (50), Expect(3) = 5e-044
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2 / +2
Query: 635 RFGIDKNTIFSAI 673
R IDKNTIFSA+
Sbjct: 596 RTSIDKNTIFSAV 634
Score = 24.9 bits (48), Expect(2) = 1e-038
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3 / -2
Query: 611 RSALQPDQHSLRE*A 567
+S LQP QH L+E*A
Sbjct: 569 KSVLQPSQHLLQE*A 525
Score = 24.4 bits (47), Expect(4) = 1e-058
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1 / -3
Query: 742 FRGIASLWFPC*W 704
F+G A WFP *W
Sbjct: 703 FQGCALSWFPS*W 665
>gb|CN821143.1|CN821143 HRO4428_A02_B04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_A02_B04, mRNA
sequence
Length = 636
Score = 250 bits (540), Expect(4) = 8e-078
Identities = 97/113 (85%), Positives = 107/113 (94%)
Frame = +2 / +2
Query: 296 RKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKK 475
RKFA+SQ+DYILGKNP KMSYVVG+G KYPKR HHRGASIPHNGV YGCKGG+KWR++KK
Sbjct: 11 RKFAKSQIDYILGKNPQKMSYVVGYGKKYPKRVHHRGASIPHNGVHYGCKGGFKWRESKK 190
Query: 476 ANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
ANPNILVGAMVAGPDR DG+KD+RTNYNYTEPTLAANAGLVAALIS++DI TG
Sbjct: 191 ANPNILVGAMVAGPDRHDGFKDIRTNYNYTEPTLAANAGLVAALISLADIDTG 349
Score = 113 bits (242), Expect(2) = 8e-031
Identities = 59/110 (53%), Positives = 70/110 (63%)
Frame = +3 / +3
Query: 297 ASLPGHSSTTSLARTH*R*ATLWVSETSTRSALITEARRYLTTASSMGAKEVTSGGTQRR 476
ASL H S T ARTH R*A L V E ST+S ITE R+ L T S+ AKEV++GG+ +R
Sbjct: 12 ASLQSHRSITF*ARTHKR*AMLLVMERSTQSVFITEGRQSLITVSTTDAKEVSNGGSLKR 191
Query: 477 QTLTSLSEQWWLAPTGVMATKMSAXXXXXXXXXXQRMLVWLQR*SLYPIS 626
QT S SEQW LA TG+MA+K+SA Q+ML WLQ * L IS
Sbjct: 192 QTQISSSEQWLLALTGMMASKISAQTIITQSLLLQQMLAWLQH*FL*LIS 341
Score = 94.1 bits (199), Expect(4) = 9e-045
Identities = 46/57 (80%), Positives = 48/57 (84%)
Frame = -2 / -1
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV IS EISAAT+PAFAARVGSV*L*FVR SL PS LSGPATIAPTR+ GFAF S
Sbjct: 348 PVSISAREISAATKPAFAARVGSV*L*FVRISLKPSCLSGPATIAPTRIFGFAFLDS 178
Score = 87.7 bits (185), Expect(2) = 2e-029
Identities = 41/73 (56%), Positives = 46/73 (63%)
Frame = +1 / +1
Query: 460 EGHKEGKP*HPCRSNGGWPRQA*WLQRCPHELQLHGAYSRSECWSGCSADLYIRYQNRTV 639
EG +GKP +P RSNG WP QA*WLQR PH+L LH AYS S+CW GCS D Y+
Sbjct: 175 EGV*KGKPKYPRRSNGCWP*QA*WLQRYPHKL*LHRAYSCSKCWLGCSTDFSS*YRYWQQ 354
Query: 640 RHR*EHHLLCDSS 678
R* H L SS
Sbjct: 355 NFR**EHHLLSSS 393
Score = 77.6 bits (163), Expect(4) = 9e-045
Identities = 35/41 (85%), Positives = 35/41 (85%)
Frame = -2 / -1
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLR 295
GIDAPL** RFGY FP PTT*LIF GFLPRM*S CD ANLR
Sbjct: 132 GIDAPL**TRFGYFFP*PTT*LIFCGFLPRM*SICDFANLR 10
Score = 72.1 bits (151), Expect(4) = 3e-030
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = -1 / -3
Query: 634 SGFDIGYRDQRCNQTSIRCESRLRVVVVRADIFVAITPVGASHHCSDKDV 485
+ DI R+Q CNQ SI C+SRL V++V ADIF AI PV AS+HCSD+D+
Sbjct: 349 ASIDIS*RNQCCNQASICCKSRLCVIIVCADIFEAIMPVRASNHCSDEDI 200
Score = 62.0 bits (129), Expect(4) = 3e-030
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = -1 / -3
Query: 451 TSFAPILDAVVRYRRASVMRALRVLVSETHNVAHLQWVLAKDVVEL*PGKLA 296
TSFA ++D V+R R SVM L VL+S T+N+AHL WVLA +V++L* KLA
Sbjct: 166 TSFASVVDTVMRD*RPSVMNTLWVLLSITNNIAHLLWVLA*NVIDL*LCKLA 11
Score = 57.0 bits (118), Expect(2) = 2e-029
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +1 / +1
Query: 286 RSPPQVCQVTARLHPWQEPIEDELRCGFRKQVPEAPSSQRRVDTS 420
R QVC+VT RLH QEP +DEL C K+VP+A SSQR V+ S
Sbjct: 1 RHEAQVCKVTDRLHSRQEPTKDELCCWLWKEVPKACSSQRGVNPS 135
Score = 41.4 bits (84), Expect(4) = 8e-078
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +3 / +3
Query: 648 IRTPSSLRFLRCSQRPRRRHQHGNHREAIP 737
IRTPSS +F +CSQ HQ GNH E+ P
Sbjct: 366 IRTPSSQQFPQCSQLRHPHHQLGNHEESHP 455
Score = 37.7 bits (76), Expect(4) = 9e-045
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -3 / -2
Query: 728 LSMVSMLMAAAGALGTSEESQRRWCSYR 645
L MVS LM LGT E RRWCSY+
Sbjct: 446 LFMVSKLMVGVAELGTLGELLRRWCSYQ 363
Score = 35.4 bits (71), Expect(2) = 8e-031
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1 / +1
Query: 649 *EHHLLCDSSDVPNAPAAAISMETIE 726
*EHHLL S +VPN+ IS+ET++
Sbjct: 367 *EHHLLSSSPNVPNSATPTISLETMK 444
Score = 27.6 bits (54), Expect(4) = 3e-030
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2 / -1
Query: 726 LYGFHADXXXXXXXXXXXIAEKMVFLS 646
L+GF AD AEKMVFLS
Sbjct: 444 LHGFQADGGGGGVGNIGGTAEKMVFLS 364
Score = 27.2 bits (53), Expect(4) = 9e-045
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1 / -3
Query: 934 KN*LHAMHTASDLCLTEDL 878
KN* H +HT S LT+DL
Sbjct: 634 KN*FHKLHTLSSPWLTDDL 578
Score = 26.7 bits (52), Expect(4) = 8e-078
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 848 YFCINMTDQYK 880
++CI MTDQYK
Sbjct: 549 FYCIGMTDQYK 581
Score = 25.4 bits (49), Expect(4) = 8e-078
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2 / +2
Query: 881 ILCQT*IGSCVHRVELIF 934
I+CQ G CV V+LIF
Sbjct: 581 IICQPWTGKCVQFVKLIF 634
Score = 25.4 bits (49), Expect(4) = 3e-030
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3 / -2
Query: 935 QKLAPRDAHSFRSMSDR 885
QKL + AH+F+SM DR
Sbjct: 635 QKLVSQIAHTFQSMVDR 585
>gb|CN819429.1|CN819429 HRO4405_H09_O17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_H09_O17, mRNA
sequence
Length = 698
Score = 131 bits (281), Expect(4) = 2e-049
Identities = 51/61 (83%), Positives = 59/61 (96%)
Frame = +2 / +2
Query: 452 YKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKT 631
++WR++KKANPNILVGAMVAGPDR DG+KD+RTNYNYTEPTLAANAGLVAALIS++DI T
Sbjct: 14 FQWRESKKANPNILVGAMVAGPDRHDGFKDIRTNYNYTEPTLAANAGLVAALISLADIDT 193
Query: 632 G 634
G
Sbjct: 194 G 196
Score = 92.7 bits (196), Expect(3) = 2e-034
Identities = 45/57 (78%), Positives = 48/57 (84%)
Frame = -2 / -3
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV +S EISAAT+PAFAARVGSV*L*FVR SL PS LSGPATIAPTR+ GFAF S
Sbjct: 195 PVSMSAREISAATKPAFAARVGSV*L*FVRISLKPSCLSGPATIAPTRIFGFAFLDS 25
Score = 81.7 bits (172), Expect(3) = 2e-028
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +1 / +1
Query: 460 EGHKEGKP*HPCRSNGGWPRQA*WLQRCPHELQLHGAYSRSECWSGCSAD 609
EG +GKP +P R NG WP QA*WLQR PH+L LH AYS S+CW GCS D
Sbjct: 22 EGV*KGKPKYPRRGNGCWP*QA*WLQRYPHKL*LHRAYSCSKCWLGCSTD 171
Score = 69.3 bits (145), Expect(3) = 8e-024
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = -1 / -2
Query: 634 SGFDIGYRDQRCNQTSIRCESRLRVVVVRADIFVAITPVGASHHCSDKDV 485
+ D+ R+Q CNQ SI C+SRL V++V ADIF AI PV AS+HC D+D+
Sbjct: 196 ASIDVS*RNQCCNQASICCKSRLCVIIVCADIFEAIMPVRASNHCPDEDI 47
Score = 48.7 bits (100), Expect(3) = 2e-034
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = -2 / -3
Query: 999 RYHFYKKELHT*AGVPIATRPPKISSTRCTQLPIYV*QRI 880
R HFYKK G+ I TR KIS T CTQLP++ *Q I
Sbjct: 546 RCHFYKKNFTRELGI*ITTRTSKISFTNCTQLPVHG*QMI 427
Score = 46.4 bits (95), Expect(4) = 2e-049
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = +2 / +2
Query: 881 ILCQT*IGSCVHRVELIFGGLVAIGTPAHV*SSFL*KWYLYKLF 1012
I+CQ GSCV V+LIF LV I P+ FL*KW+L K F
Sbjct: 428 IICQPWTGSCVQFVKLIFEVLVVIHIPSSRVKFFL*KWHLCKSF 559
Score = 46.4 bits (95), Expect(3) = 8e-024
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = -3 / -1
Query: 1013 KTICKGTISTKKNFTHELECQ*QQDPQKLAPRDAHSFRSMSDR 885
K KG ISTK+ E +*QQ PQKL + AH+F+SM DR
Sbjct: 560 KMTYKGAISTKRTSRVNSEYE*QQGPQKLVSQIAHNFQSMVDR 432
Score = 45.1 bits (92), Expect(3) = 2e-028
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +1 / +1
Query: 886 LSDIDRKLCASRGANFWGSCCYWHSSSCVKFFFVEMVPL 1002
LS +D KLCA NF G CCY +S + FVEM PL
Sbjct: 433 LSTMDWKLCAICETNF*GPCCYSYSEFTREVLFVEMAPL 549
Score = 42.8 bits (87), Expect(4) = 2e-049
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = +3 / +3
Query: 648 IRTPSSLRFLRCSQRPRRRHQHGNHREAIPLNVFS 752
IRTPSS F +CSQ HQ GNH EA P + S
Sbjct: 213 IRTPSSQLFPQCSQLHHPHHQLGNHEEAHP*TIIS 317
Score = 41.8 bits (85), Expect(3) = 2e-034
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -3 / -1
Query: 731 CLSMVSMLMAAAGALGTSEESQRRWCSYRCR 639
CL MVS LM LGT E RRWCSY+ +
Sbjct: 296 CLFMVSKLMVGVVELGTLGEQLRRWCSYQLK 204
Score = 36.3 bits (73), Expect(3) = 2e-028
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +1 / +1
Query: 649 *EHHLLCDSSDVPNAPAAAISMETIER 729
*EHHLL S +VPN+ IS+ET++R
Sbjct: 214 *EHHLLSCSPNVPNSTTPTISLETMKR 294
Score = 31.8 bits (63), Expect(3) = 8e-024
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2 / -3
Query: 732 LPLYGFHADXXXXXXXXXXXIAEKMVFLSM 643
+PL+GF AD AEKMVFLS+
Sbjct: 297 VPLHGFQADGGGGGVGNIGGTAEKMVFLSI 208
Score = 26.7 bits (52), Expect(4) = 2e-049
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 848 YFCINMTDQYK 880
++CI MTDQYK
Sbjct: 396 FYCIGMTDQYK 428
>gb|CN816903.1|CN816903 HRO4526_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_A11_A22, mRNA sequence
Length = 559
Score = 95.9 bits (203), Expect(4) = 4e-037
Identities = 38/44 (86%), Positives = 42/44 (95%)
Frame = +2 / -1
Query: 503 MVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
MVAGPDR DG+KD+RTNYNYTEPTLAANAGLVAALIS++DI TG
Sbjct: 559 MVAGPDRHDGFKDIRTNYNYTEPTLAANAGLVAALISLADIDTG 428
Score = 70.3 bits (147), Expect(3) = 3e-026
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = -2 / +3
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPAT 505
PV +S EISAAT+PAFAARVGSV*L*FVR SL PS LSGPAT
Sbjct: 429 PVSMSAREISAATKPAFAARVGSV*L*FVRISLKPSCLSGPAT 557
Score = 62.9 bits (131), Expect(3) = 4e-023
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +1 / -3
Query: 505 GGWPRQA*WLQRCPHELQLHGAYSRSECWSGCSAD 609
G WP QA*WLQR PH+L LH A+S S+CW GCS D
Sbjct: 557 GCWP*QA*WLQRYPHKL*LHRAHSCSKCWLGCSTD 453
Score = 48.7 bits (100), Expect(3) = 3e-026
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = -2 / +3
Query: 999 RYHFYKKELHT*AGVPIATRPPKISSTRCTQLPIYV*QRI 880
R HFYKK G+ I TR KIS T CTQLP++ *Q I
Sbjct: 78 RCHFYKKNFTRELGI*ITTRTSKISFTNCTQLPVHG*QMI 197
Score = 46.4 bits (95), Expect(4) = 4e-037
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = +2 / -1
Query: 881 ILCQT*IGSCVHRVELIFGGLVAIGTPAHV*SSFL*KWYLYKLF 1012
I+CQ GSCV V+LIF LV I P+ FL*KW+L K F
Sbjct: 196 IICQPWTGSCVQFVKLIFEVLVVIHIPSSRVKFFL*KWHLCKSF 65
Score = 46.0 bits (94), Expect(3) = 4e-023
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +1 / -3
Query: 886 LSDIDRKLCASRGANFWGSCCYWHSSSCVKFFFVEMVPL 1002
LS +D KLCA NF G CCY +S + FVEM PL
Sbjct: 191 LSTMDWKLCAICETNF*GPCCYSYSEFTCEVLFVEMAPL 75
Score = 41.4 bits (84), Expect(4) = 4e-037
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +3 / -2
Query: 648 IRTPSSLRFLRCSQRPRRRHQHGNHREAIP 737
IRTPSS +F +CSQ HQ GNH E+ P
Sbjct: 411 IRTPSSQQFPQCSQLHHPHHQLGNHEESHP 322
Score = 35.9 bits (72), Expect(3) = 3e-026
Identities = 16/27 (59%), Positives = 16/27 (59%)
Frame = -3 / +1
Query: 728 LSMVSMLMAAAGALGTSEESQRRWCSY 648
L MVS LM LGT E RRWCSY
Sbjct: 331 LFMVSKLMVGVVELGTLGELLRRWCSY 411
Score = 35.4 bits (71), Expect(3) = 4e-023
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1 / -3
Query: 649 *EHHLLCDSSDVPNAPAAAISMETIE 726
*EHHLL S +VPN+ IS+ET++
Sbjct: 410 *EHHLLSSSPNVPNSTTPTISLETMK 333
Score = 22.1 bits (42), Expect(4) = 4e-037
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2 / -2
Query: 848 YFCINMTDQYK 880
+ CI TDQYK
Sbjct: 228 FHCIGTTDQYK 196
>gb|CN821305.1|CN821305 HRO4423_G12_N23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_G12_N23, mRNA
sequence
Length = 815
Score = 109 bits (233), Expect(2) = 3e-032
Identities = 42/79 (53%), Positives = 58/79 (73%)
Frame = +2 / +1
Query: 182 LQYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYV 361
LQ+A NAAFLA +YSDY+ + T C +++ +R FA SQ +YILG NP+K+SY+
Sbjct: 82 LQHATNAAFLAVVYSDYMLTSQTAAVECSGKYFSPTYIRNFAISQANYILGDNPMKLSYL 261
Query: 362 VGFGNKYPKRPHHRGASIP 418
VG+G+ YP++ HHRGASIP
Sbjct: 262 VGYGSNYPQQVHHRGASIP 318
Score = 44.1 bits (90), Expect(2) = 3e-032
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2 / +1
Query: 449 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISI 616
G+ + + NPNI +GA+V GP + D + D+R N TE + + LV L +
Sbjct: 343 GFDYLHSTSPNPNIAMGALVGGPFQNDSFVDLRDNAVQTESSTYNSGTLVGLLAGL 510
>gb|CN821037.1|CN821037 HRO4422_G12_M24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_G12_M24, mRNA
sequence
Length = 784
Score = 108 bits (231), Expect(2) = 6e-032
Identities = 42/79 (53%), Positives = 58/79 (73%)
Frame = +2 / +2
Query: 182 LQYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYV 361
LQ+A NAAFLA +YSDY+ + T C +++ +R FA SQ +YILG NP+K+SY+
Sbjct: 107 LQHATNAAFLAVVYSDYMLTSQTAAVECSGKYFSPTDIRNFAISQANYILGDNPMKLSYL 286
Query: 362 VGFGNKYPKRPHHRGASIP 418
VG+G+ YP++ HHRGASIP
Sbjct: 287 VGYGSNYPQQVHHRGASIP 343
Score = 44.1 bits (90), Expect(2) = 6e-032
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2 / +2
Query: 449 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISI 616
G+ + + NPNI +GA+V GP + D + D+R N TE + + LV L +
Sbjct: 368 GFDYLHSTSPNPNIAMGALVGGPFQNDSFVDLRDNAVQTESSTYNSGTLVGLLAGL 535
>gb|CN820388.1|CN820388 HRO4418_G08_M16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_G08_M16, mRNA
sequence
Length = 679
Score = 103 bits (220), Expect(2) = 2e-030
Identities = 40/76 (52%), Positives = 55/76 (72%)
Frame = +2 / +3
Query: 191 AVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGF 370
A NAAFLA +YSDY+ + T C +++ +R FA SQ +YILG NP+K+SY+VG+
Sbjct: 24 ATNAAFLAVVYSDYMLTSQTAAVECSGKYFSPTDIRNFAISQANYILGDNPMKLSYLVGY 203
Query: 371 GNKYPKRPHHRGASIP 418
G+ YP++ HHRGASIP
Sbjct: 204 GSNYPQQVHHRGASIP 251
Score = 44.1 bits (90), Expect(2) = 2e-030
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2 / +3
Query: 449 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISI 616
G+ + + NPNI +GA+V GP + D + D+R N TE + + LV L +
Sbjct: 276 GFDYLHSTSPNPNIAMGALVGGPFQNDSFVDLRDNAVQTESSTYNSGTLVGLLAGL 443
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,453,750
Number of Sequences: 8143
Number of extensions: 181819
Number of successful extensions: 1428
Number of sequences better than 1.0e-020: 7
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 379687230
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)