TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161072.2.3
         (885 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814756.1|CN814756  HRO4502_B07_C14ZS5 Lib AA071E1X Aven...   199   2e-053

>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4502_B07_C14, mRNA sequence
          Length = 620

 Score =  199 bits (428), Expect(2) = 2e-053
 Identities = 79/110 (71%), Positives = 92/110 (83%)
 Frame = +3 / +1

                                                                       
Query: 210 DAEREPSVFSRITKFEEELRAVLPQXXXXXXXXXXXGTAPVANRIADSRSFPLYRFVRQE 389
           +AE E +VFS+ITKFEEELR+ LP+           GTAP+ N I +SRSFPLYRFVR+E
Sbjct: 7   EAEGEATVFSKITKFEEELRSALPREIEAARVAFETGTAPIPNLIKESRSFPLYRFVREE 186

                                                             
Query: 390 LGCVFLTGEKLKSPGEECNKVFLGISQGKLVDPMLECLKEWDGKPLPINI 539
           LGCV+LTGEKL SPGEECNKVFLGISQGKL+DPMLECLKEW+G+PLPIN+
Sbjct: 187 LGCVYLTGEKLLSPGEECNKVFLGISQGKLIDPMLECLKEWNGEPLPINV 336




 Score =  155 bits (332), Expect = 1e-038
 Identities = 71/109 (65%), Positives = 72/109 (66%)
 Frame = -3 / -1

                                                                       
Query: 535 LMGSGLPSHSLRHSSMGSTSLPWLMPRNTLLHSSPGDLSFSPVRNTQPSSWRTKRYSGNE 356
           LMG G P HSLRHSSMGS SLPWLMPRNTLLHSSPGD SFSPVR TQPSS RTKRYSG +
Sbjct: 332 LMGRGSPFHSLRHSSMGSMSLPWLMPRNTLLHSSPGDRSFSPVRYTQPSSSRTKRYSGKD 153

                                                            
Query: 355 RLSAIRLATGAVPXXXXXXXXXXXXXXXXXXXXSNLVILEKTEGSRSAS 209
            LS IR   GAVP                    SNLVILE T  S SAS
Sbjct: 152 LLSLIRFGIGAVPVSKATRAASISRGSAERSSSSNLVILENTVASPSAS 6




 Score =  113 bits (241), Expect(2) = 2e-027
 Identities = 47/58 (81%), Positives = 48/58 (82%)
 Frame = +2 / +3

                                                                     
Query: 362 PAVPLRAPGARLRVPHRREAQVPRRGVQQGVPRHQPGQARRPHARVPQGVGRQAAAHQ 535
           PAVPLR  GA LRVPHRRE  VPRRGVQQGVP HQPGQA RPHA VPQGV R+A AHQ
Sbjct: 159 PAVPLRPRGAGLRVPHRRETPVPRRGVQQGVPGHQPGQAHRPHAGVPQGVERRAPAHQ 332




 Score = 27.6 bits (54), Expect(2) = 2e-053
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1 / +3

                             
Query: 802 *DPILLYFGVNYILRDQF 855
           *D +LLYFG+ Y+L D F
Sbjct: 567 *DIVLLYFGLKYMLLDCF 620




 Score = 26.7 bits (52), Expect(2) = 2e-027
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2 / +1

                           
Query: 803 KILYCCILG*TTSYVI 850
           KIL CCILG*+  Y I
Sbjct: 568 KILSCCILG*SICYSI 615



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,205,834
Number of Sequences: 8143
Number of extensions: 93779
Number of successful extensions: 990
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 305551838
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)