TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161072.2.1
         (1197 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814756.1|CN814756  HRO4502_B07_C14ZS5 Lib AA071E1X Aven...   197   3e-051

>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4502_B07_C14, mRNA sequence
          Length = 620

 Score =  197 bits (425), Expect = 3e-051
 Identities = 78/110 (70%), Positives = 92/110 (83%)
 Frame = -1 / +1

                                                                       
Query: 684 DAEREPSVFSKITRFEEELRAVLPQXXXXXXXXXXEGTAPVANRIADSRSFPLYRFVREE 505
           +AE E +VFSKIT+FEEELR+ LP+           GTAP+ N I +SRSFPLYRFVREE
Sbjct: 7   EAEGEATVFSKITKFEEELRSALPREIEAARVAFETGTAPIPNLIKESRSFPLYRFVREE 186

                                                             
Query: 504 LGCVFLTGERLKSPGEECNKVFVGISQGKLVDPMLECLKEWDGKPLPINI 355
           LGCV+LTGE+L SPGEECNKVF+GISQGKL+DPMLECLKEW+G+PLPIN+
Sbjct: 187 LGCVYLTGEKLLSPGEECNKVFLGISQGKLIDPMLECLKEWNGEPLPINV 336




 Score =  155 bits (334), Expect = 1e-038
 Identities = 70/107 (65%), Positives = 70/107 (65%)
 Frame = +2 / -1

                                                                       
Query: 365 GSGLPSHSLRHSSMGSTSLPWLMPTNTLLHSSPGDLSLSPVRNTQPSSSRTKRYSGNDRL 544
           G G P HSLRHSSMGS SLPWLMP NTLLHSSPGD S SPVR TQPSSSRTKRYSG D L
Sbjct: 326 GRGSPFHSLRHSSMGSMSLPWLMPRNTLLHSSPGDRSFSPVRYTQPSSSRTKRYSGKDLL 147

                                                          
Query: 545 SAIRFATGAVPXXXXXXXXXXXXXXXXXXXXXNLVILENTEGSRSAS 685
           S IRF  GAVP                     NLVILENT  S SAS
Sbjct: 146 SLIRFGIGAVPVSKATRAASISRGSAERSSSSNLVILENTVASPSAS 6



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 10,230,578
Number of Sequences: 8143
Number of extensions: 136819
Number of successful extensions: 1156
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 428055030
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)