TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 133 2e-034
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 140 2e-034
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 133 3e-034
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 137 2e-033
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 133 bits (284), Expect(2) = 2e-034
Identities = 51/65 (78%), Positives = 58/65 (89%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GR NRTPTIVIVW+ILLASIFSLLWVRIDPF + GP ++
Sbjct: 41 FFAFWVIVHLYPFLKGLMGRTNRTPTIVIVWAILLASIFSLLWVRIDPFTTRVAGPNIQT 220
Query: 187 CGLDC 201
CG++C
Sbjct: 221 CGINC 235
Score = 29.0 bits (57), Expect(2) = 2e-034
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3 / +1
Query: 330 PNIWDTLGGKWRLRQS 377
PN+WD L GKW + ++
Sbjct: 214 PNLWDQLLGKWEIAET 261
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 140 bits (300), Expect = 2e-034
Identities = 51/65 (78%), Positives = 61/65 (93%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FF+FWVIVHLYPFLKGL+GRQNRTPTIV++WS+LLASIFSL+WVRIDPF+AK GP+L+
Sbjct: 137 FFSFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFIAKSKGPILKP 316
Query: 187 CGLDC 201
CG+ C
Sbjct: 317 CGVQC 331
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 133 bits (284), Expect(2) = 3e-034
Identities = 51/65 (78%), Positives = 58/65 (89%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GR NRTPTIVIVW+ILLASIFSLLWVRIDPF + GP ++
Sbjct: 130 FFAFWVIVHLYPFLKGLMGRTNRTPTIVIVWAILLASIFSLLWVRIDPFTTRVAGPNIQT 309
Query: 187 CGLDC 201
CG++C
Sbjct: 310 CGINC 324
Score = 29.0 bits (57), Expect(2) = 3e-034
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3 / +3
Query: 330 PNIWDTLGGKWRLRQS 377
PN+WD L GKW + ++
Sbjct: 303 PNLWDQLLGKWEIAET 350
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 137 bits (294), Expect = 2e-033
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +3
Query: 22 VIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEECGLDC 201
VIVHLYPFLKGL+GRQNRTPTIVIVWSILLASI SLLWVR++PFLAK DGP LEECGLDC
Sbjct: 12 VIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAKTDGPTLEECGLDC 191
Query: 202 N*GMSAHQL 228
* ++ Q+
Sbjct: 192 A**ITVQQM 218
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,396,720
Number of Sequences: 8143
Number of extensions: 157142
Number of successful extensions: 1700
Number of sequences better than 1.0e-020: 4
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 221812061
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)