TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804918.2.5
(733 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Aven... 114 2e-027
>gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B10_C19, mRNA sequence
Length = 716
Score = 114 bits (244), Expect(2) = 2e-027
Identities = 49/62 (79%), Positives = 53/62 (85%)
Frame = -2 / -2
Query: 378 RTMRNRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGEVEIPSA*RLDIEGD 199
+ M RSMAKE+ GTVKEILGTCVSVGCTVDGKDPKDLQ EID+GEVEIPSA*R GD
Sbjct: 445 KIMAPRSMAKEITGTVKEILGTCVSVGCTVDGKDPKDLQTEIDEGEVEIPSA*RS*HLGD 266
Query: 198 FH 193
+H
Sbjct: 265 YH 260
Score = 22.6 bits (43), Expect(2) = 2e-027
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1 / -3
Query: 184 LKCCCSACRRC 152
LKCC A +RC
Sbjct: 234 LKCCLCASQRC 202
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,212,560
Number of Sequences: 8143
Number of extensions: 64840
Number of successful extensions: 820
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 243467600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)