TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1804918.2.4
         (634 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815574.1|CN815574  HRO4513_B10_C19ZS5 Lib AA071E1X Aven...   111   2e-025

>gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4513_B10_C19, mRNA sequence
          Length = 716

 Score =  111 bits (236), Expect = 2e-025
 Identities = 47/54 (87%), Positives = 49/54 (90%)
 Frame = -1 / -2

                                                                 
Query: 337 KTMRNRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGEVEIPSA*R 176
           K M  RSMAKE+ GTVKEILGTCVSVGCTVDGKDPKDLQ EID+GEVEIPSA*R
Sbjct: 445 KIMAPRSMAKEITGTVKEILGTCVSVGCTVDGKDPKDLQTEIDEGEVEIPSA*R 284



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 4,639,892
Number of Sequences: 8143
Number of extensions: 53855
Number of successful extensions: 1045
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 205880808
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)