TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804898.2.1
(739 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816101.1|CN816101 HRO4517_A05_A09ZS5 Lib AA071E1X Aven... 56 8e-022
gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Aven... 54 5e-021
>gb|CN816101.1|CN816101 HRO4517_A05_A09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A05_A09, mRNA sequence
Length = 652
Score = 55.6 bits (115), Expect(3) = 8e-022
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +2 / +3
Query: 344 VLDLHILSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
+ D+ ++ G +R+E WR +F+ AGF DYKI G S+IEV+P*
Sbjct: 306 LFDMLMMVNTRGGQRDEKHWRELFMQAGFTDYKIVKKLGARSVIEVYP* 452
Score = 51.5 bits (106), Expect(3) = 8e-022
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +2 / +3
Query: 116 LSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERC 232
+++ GD+F +P + A+MLK +LH W ++ C+KI+ +C
Sbjct: 90 INYVAGDLFHTVPPSQAVMLKLVLHFWSDEDCVKILAQC 206
Score = 28.6 bits (56), Expect(3) = 8e-022
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2 / +3
Query: 56 RCTVMDLPHVVAEAP 100
+CTV+DLP V+ +AP
Sbjct: 33 KCTVLDLPKVIEKAP 77
>gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_B06_C11, mRNA sequence
Length = 629
Score = 53.8 bits (111), Expect(3) = 5e-021
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +2 / +1
Query: 116 LSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERC 232
+++ GD+F +P + A++LK +LH W +D C+KI+ +C
Sbjct: 124 VNYVAGDLFHSVPKSQAVLLKLVLHHWSDDDCVKILSQC 240
Score = 51.9 bits (107), Expect(3) = 5e-021
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +2 / +1
Query: 344 VLDLHILSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVF 484
++D+ +L G +R+E++WR++F+ AGF DYK+ G + EV+
Sbjct: 340 LMDMAMLVNTRGRQRDENDWRQLFMKAGFSDYKVVKKLGARGVFEVY 480
Score = 27.2 bits (53), Expect(3) = 5e-021
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2 / +1
Query: 56 RCTVMDLPHVVAEAPA 103
+CTV+DLP V+ + P+
Sbjct: 67 KCTVLDLPKVIEKVPS 114
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,360,521
Number of Sequences: 8143
Number of extensions: 106566
Number of successful extensions: 1288
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 245902276
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)