TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738978.2.1
(572 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821192.1|CN821192 HRO4428_E07_J14ZS5 Lib AA069E1X Aven... 107 1e-024
>gb|CN821192.1|CN821192 HRO4428_E07_J14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_E07_J14, mRNA
sequence
Length = 586
Score = 107 bits (229), Expect = 1e-024
Identities = 39/67 (58%), Positives = 50/67 (74%)
Frame = -3 / +2
Query: 489 CNAGQLAACAPAITAGARPSASCCSNLKAQQGCFCQFVKNPTYGRYINSPNARKVVASCG 310
C+A L ACA I G+ PSASCCSNL++Q+GCFCQ+ +NP Y YI S NARK +A+C
Sbjct: 158 CDASNLVACAGPIVTGSTPSASCCSNLRSQRGCFCQYARNPAYAGYIKSANARKTLATCH 337
Query: 309 VSVPRC* 289
V++P C*
Sbjct: 338 VALPSC* 358
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,601,141
Number of Sequences: 8143
Number of extensions: 88456
Number of successful extensions: 1984
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 181371188
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)