TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738875.2.1
(761 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U57787.1|ASU57787 Avena sativa permatin precursor mRNA, ... 33 0.054
gb|CN821486.1|CN821486 HRO4425_H04_O07ZS5 Lib AA069E1X Aven... 33 0.074
emb|AX342775.1| Sequence 42 from Patent WO0198474 24 0.48
emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllid... 28 0.51
gb|CN821539.1|CN821539 HRO4426_D12_G24ZS5 Lib AA069E1X Aven... 29 0.68
gb|U11693.1|ASU11693 Avena sativa victorin binding protein ... 29 0.68
gb|CN815225.1|CN815225 HRO4507_C07_F13ZS5 Lib AA071E1X Aven... 25 1.2
gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Aven... 29 1.3
gb|CN819439.1|CN819439 HRO4406_E01_I02ZS5 Lib AA069E1X Aven... 29 1.3
emb|Z48431.1|AFABF2 A.fatua mRNA for DNA-binding protein (c... 29 1.3
emb|AJ001140.1|AFJ001140 Avena fatua mRNA for VIVIPAROUS 1 ... 29 1.3
gb|AF155932.1| Avena sativa 1,3-beta glucanase (Oglc13) mRN... 29 1.3
emb|AJ010729.1|AFA010729 Avena fatua alpha-Amy2D gene, exon... 25 1.4
gb|CN814703.1|CN814703 HRO4501_E12_I23ZS5 Lib AA071E1X Aven... 28 1.8
gb|CN818354.1|CN818354 HRO4457_B06_D11ZS5 Lib AA070E1X Aven... 28 1.8
dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-Co... 28 1.8
emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase 28 1.8
gb|CN820476.1|CN820476 HRO4419_G09_N17ZS5 Lib AA069E1X Aven... 28 2.4
gb|CN820546.1|CN820546 HRO4413_F04_K07ZS5 Lib AA069E1X Aven... 28 2.4
gb|CN821670.1|CN821670 HRO4408_H06_P12ZS5 Lib AA069E1X Aven... 28 2.4
gb|CN815397.1|CN815397 HRO4509_B12_C23ZS5 Lib AA071E1X Aven... 27 3.4
gb|CN817547.1|CN817547 HRO4463_G08_M15ZS5 Lib AA070E1X Aven... 27 3.4
gb|CN819088.1|CN819088 HRO4455_D06_G11ZS5 Lib AA070E1X Aven... 27 3.4
gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene... 27 3.4
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 27 3.4
gb|CN814783.1|CN814783 HRO4502_D11_G22ZS5 Lib AA071E1X Aven... 24 4.4
emb|AX458011.1| Sequence 3 from Patent WO0246387 24 4.4
gb|CN817629.1|CN817629 HRO4463_B12_C23ZS5 Lib AA070E1X Aven... 27 4.6
gb|CN817872.1|CN817872 HRO4462_E06_J12ZS5 Lib AA070E1X Aven... 27 4.6
gb|CN815631.1|CN815631 HRO4513_G09_M17ZS5 Lib AA071E1X Aven... 26 6.3
gb|CN817002.1|CN817002 HRO4527_B09_D17ZS5 Lib AA071E1X Aven... 26 6.3
gb|CN817700.1|CN817700 HRO4461_G05_N09ZS5 Lib AA070E1X Aven... 26 6.3
gb|CN817827.1|CN817827 HRO4462_G12_N24ZS5 Lib AA070E1X Aven... 26 6.3
gb|CN820089.1|CN820089 HRO4411_A01_B01ZS5 Lib AA069E1X Aven... 26 6.3
gb|CN820724.1|CN820724 HRO4416_H04_P08ZS5 Lib AA069E1X Aven... 26 6.3
gb|CN820960.1|CN820960 HRO4421_H10_O19ZS5 Lib AA069E1X Aven... 26 6.3
gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocoty... 26 6.3
gb|AF003527.1|AF003527 Avena vaviloviana knotted-1 homeobox... 26 6.3
gb|CN816085.1|CN816085 HRO4516_G08_N16ZS5 Lib AA071E1X Aven... 26 8.7
gb|CN816620.1|CN816620 HRO4522_H08_O16ZS5 Lib AA071E1X Aven... 26 8.7
gb|CN816680.1|CN816680 HRO4523_E09_J17ZS5 Lib AA071E1X Aven... 26 8.7
gb|CN817509.1|CN817509 HRO4454_G05_N10ZS5 Lib AA070E1X Aven... 26 8.7
gb|CN817582.1|CN817582 HRO4463_E08_I15ZS5 Lib AA070E1X Aven... 26 8.7
gb|CN817775.1|CN817775 HRO4459_A10_A19ZS5 Lib AA070E1X Aven... 26 8.7
gb|CN817952.1|CN817952 HRO4453_C12_F23ZS5 Lib AA070E1X Aven... 26 8.7
gb|CN818008.1|CN818008 HRO4472_G03_M06ZS5 Lib AA070E1X Aven... 26 8.7
gb|CN818030.1|CN818030 HRO4472_D10_G20ZS5 Lib AA070E1X Aven... 26 8.7
gb|CN818103.1|CN818103 HRO4456_F03_K06ZS5 Lib AA070E1X Aven... 26 8.7
gb|CN818992.1|CN818992 HRO4455_F12_K23ZS5 Lib AA070E1X Aven... 26 8.7
gb|CN819367.1|CN819367 HRO4405_B06_C11ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN819405.1|CN819405 HRO4405_F04_K07ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN819526.1|CN819526 HRO4401_B11_C21ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN819639.1|CN819639 HRO4402_E03_I06ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN820207.1|CN820207 HRO4412_E09_J18ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN820910.1|CN820910 HRO4421_D03_G05ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN820986.1|CN820986 HRO4422_C02_E04ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN821200.1|CN821200 HRO4428_F03_L06ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN821291.1|CN821291 HRO4423_F09_L17ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN821489.1|CN821489 HRO4425_H07_O13ZS5 Lib AA069E1X Aven... 26 8.7
emb|AX004618.1| Sequence 1 from Patent WO9915667 26 8.7
dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthran... 26 8.7
gb|AY847063.1| Avena sativa Aux/IAA2 mRNA, partial cds 26 8.7
emb|AJ010728.1|AFA010728 Avena fatua alpha-Amy2A gene, exon... 26 8.7
>gb|U57787.1|ASU57787 Avena sativa permatin precursor mRNA, complete cds
Length = 846
Score = 33.1 bits (66), Expect = 0.054
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -3 / +3
Query: 204 STWSRMAGPPGCATQKMEFQSEMPSGLNASSSARPMFLEMSPGTSLSRWKVSPTSRRWP 28
ST R G PGC + + G + ++A + PG+S RW+ + ++R P
Sbjct: 201 STCRRGPGAPGCGRARGAPSTPAAGGTASRATAAARWPAACPGSSRRRWRSTRSARAGP 377
>gb|CN821486.1|CN821486 HRO4425_H04_O07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_H04_O07, mRNA
sequence
Length = 469
Score = 32.7 bits (65), Expect = 0.074
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -3 / +3
Query: 393 SPGPKPKRTPQSRPSPVVACPSSAERLRISSRMKRTQALDMLPYSERTWRVARILALSSP 214
+P P RT Q+RPS + + L + + RT+A E TW+V + L +P
Sbjct: 3 TPLETPSRTHQARPSTSSSSSWLSSPLCLHPSLPRTEACCSSTSREHTWQVKQNYDLRTP 182
Query: 213 T 211
+
Sbjct: 183 S 185
>emb|AX342775.1| Sequence 42 from Patent WO0198474
Length = 513
Score = 24.4 bits (47), Expect(2) = 0.48
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 9 TRRAPSTATSARWGSPSTCSR 71
TRR S ++ +RW +P + SR
Sbjct: 172 TRRTTSRSSPSRWRTPPSPSR 234
Score = 22.6 bits (43), Expect(2) = 0.48
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +3 / +1
Query: 168 RTPAGPPSSTRWRPRSGWTRPGC 236
RTP P R P + PGC
Sbjct: 211 RTPPSPSRPARSTPAVWCSAPGC 279
>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase
Length = 1146
Score = 27.6 bits (54), Expect(2) = 0.51
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -3 / +1
Query: 186 AGPPGCATQKMEFQSEMPSGLNASSSARPMFLEMSPGTSLSRWKVSPTS 40
A PP ++ S S + SS R SPG RW SP S
Sbjct: 664 ASPPPASSGSTSRSSARSSRRSRSS*PRGSCRRRSPGRGSRRWSGSPAS 810
Score = 22.1 bits (42), Expect(2) = 0.51
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -3 / +1
Query: 444 AAPVVMGTLWSTTVSTVSPGPKPKRTP 364
AAP T W T + +P +R+P
Sbjct: 217 AAPRCRWTCWCATPPSTAPRRASRRSP 297
>gb|CN821539.1|CN821539 HRO4426_D12_G24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D12_G24, mRNA
sequence
Length = 700
Score = 29.5 bits (58), Expect = 0.68
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +2
Query: 33 TSARWGSPSTCSRTCP 80
T AR GSP +C+R+CP
Sbjct: 5 TRARTGSPWSCARSCP 52
>gb|U11693.1|ASU11693 Avena sativa victorin binding protein mRNA, complete cds
Length = 3408
Score = 29.5 bits (58), Expect = 0.68
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3 / +3
Query: 6 PTRRAPSTATSARWGSPSTCSRT 74
P+ T+T++RW P TCSR+
Sbjct: 939 PSSSRTRTSTASRWSWPLTCSRS 1007
>gb|CN815225.1|CN815225 HRO4507_C07_F13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C07_F13, mRNA sequence
Length = 585
Score = 24.9 bits (48), Expect(2) = 1.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +3
Query: 81 PGTSLSRWKVSPTSRRWPSMAP 16
P S+W VS TSR P AP
Sbjct: 456 PPRRSSKWLVSETSRPPPEAAP 521
Score = 22.6 bits (43), Expect(2) = 1.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3 / +2
Query: 426 GTLWSTTVSTVSPGPKPKRTPQSRPSPVVACPSSAERLRISSRMK 292
G L + S+ K + + PSP + PSS + R S R K
Sbjct: 11 GPLPISADSSTKVSLKRSKISTNSPSPSRSPPSSTDSSRTSLRKK 145
>gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_A01_B02, mRNA sequence
Length = 600
Score = 28.6 bits (56), Expect = 1.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3 / -1
Query: 441 APVVMGTLWSTTVSTVSPGPKPKRTPQSRPSPVVACPSSAERLRISSR 298
AP S T+ST +PGP P + + S +V+ SS +R R
Sbjct: 279 APSRTSPTTSPTLSTTTPGPSPPTSSLASKSLLVSSTSSVCCVRALGR 136
>gb|CN819439.1|CN819439 HRO4406_E01_I02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_E01_I02, mRNA
sequence
Length = 387
Score = 28.6 bits (56), Expect = 1.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3 / +1
Query: 441 APVVMGTLWSTTVSTVSPGPKPKRTPQSRPSPVVACPSSAERLRISSR 298
AP S T+ST +PGP P + + S +V+ SS +R R
Sbjct: 94 APSRTSPTTSPTLSTTTPGPSPPTSSLASKSLLVSSTSSVCCVRALGR 237
>emb|Z48431.1|AFABF2 A.fatua mRNA for DNA-binding protein (clone ABF2)
Length = 1283
Score = 28.6 bits (56), Expect = 1.3
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3 / +1
Query: 111 SARPMFLEMSPGTSLSRWKVSPTSRRWPSMAPSES 7
SARP + G S SRW S TS P + S S
Sbjct: 574 SARPASRASASGRSASRWSPSATSTPTPPTSASWS 678
>emb|AJ001140.1|AFJ001140 Avena fatua mRNA for VIVIPAROUS 1 homologue transcription factor
Length = 2336
Score = 28.6 bits (56), Expect = 1.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 177 AGPPSSTRWRPRSG 218
AG P+ RWRPR G
Sbjct: 92 AGEPAQARWRPREG 133
>gb|AF155932.1| Avena sativa 1,3-beta glucanase (Oglc13) mRNA, partial cds
Length = 1045
Score = 28.6 bits (56), Expect = 1.3
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = -3 / +2
Query: 222 SSPTLASTWSRMAGPPGCATQKMEFQSEMPSGLNASSSARPMFLEMSPGTSLSRWKVSPT 43
+SPT AST P CATQ + +A S A P GT+ S + +
Sbjct: 77 ASPTCASTSPTGRRCPRCATQASASSWTSATTSSARSPAAPPTRPPGSGTTCSVTRA*RS 256
Query: 42 SRRW 31
S W
Sbjct: 257 STSW 268
>emb|AJ010729.1|AFA010729 Avena fatua alpha-Amy2D gene, exons 1-4
Length = 2701
Score = 24.9 bits (48), Expect(2) = 1.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3 / +1
Query: 330 SSAERLRISSRMKRTQALDMLPYSERTW 247
++A R R SSR T A MLP W
Sbjct: 1963 ATASRRRASSRSSCTTATPMLPRLTARW 2046
Score = 24.4 bits (47), Expect(2) = 1.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3 / +1
Query: 714 PHHPMHAKVTTIR 676
P HP+H K TT R
Sbjct: 1762 PRHPLHRKQTTSR 1800
>gb|CN814703.1|CN814703 HRO4501_E12_I23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_E12_I23, mRNA sequence
Length = 625
Score = 28.1 bits (55), Expect = 1.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3 / +3
Query: 6 PTRRAPSTATSARWGSPSTCSRTCP 80
PT A +A + RW + +T + +CP
Sbjct: 114 PTTAASRSAATGRWSTTATMTYSCP 188
>gb|CN818354.1|CN818354 HRO4457_B06_D11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_B06_D11, mRNA sequence
Length = 538
Score = 28.1 bits (55), Expect = 1.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3 / +1
Query: 3 CPTRRAPSTATSARWGSPSTCSRTC 77
CPT S AT R S CSR C
Sbjct: 115 CPTPTTCSAATRRRDASTHACSRRC 189
>dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-CoA 3-O-methyltransferase,
partial cds
Length = 622
Score = 28.1 bits (55), Expect = 1.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1 / +2
Query: 232 DARHPPRPLRVRQHVQRLRPLHPRRDAQA 318
+AR RP R+RQH PRR A A
Sbjct: 182 EARQGRRPARIRQHALERLRRAPRRRAHA 268
>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
Length = 1448
Score = 28.1 bits (55), Expect = 1.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3 / -2
Query: 183 PPSSTRWRPRSGWTRPG 233
PP R RPR+G TRPG
Sbjct: 553 PPRP*RSRPRAGCTRPG 503
Score = 28.1 bits (55), Expect = 1.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2 / +3
Query: 259 GEDVAGGAHPGLVQPDLGLHLVEDGG 182
G+ V HPG VQP LG L GG
Sbjct: 477 GDHVGVAGHPGRVQPALGRLLHGRGG 554
Score = 24.0 bits (46), Expect(2) = 3.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3 / +2
Query: 174 PAGPPSSTRWRPRSGWTRPG 233
P P STR R + W+R G
Sbjct: 926 PTCSPCSTRTRRTTAWSRTG 985
Score = 23.1 bits (44), Expect(2) = 3.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3 / +2
Query: 6 PTRRAPSTATSARWGSPSTCSRTCP 80
PT RAP T + P+ SRT P
Sbjct: 638 PTTRAPWT*ATRSSPPPAPWSRTAP 712
>gb|CN820476.1|CN820476 HRO4419_G09_N17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_G09_N17, mRNA
sequence
Length = 690
Score = 27.6 bits (54), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3 / +2
Query: 249 WRVARILALSSPTLASTWSRMAGPPGCATQKMEFQS 142
WR +RI+A S TL +S +GP A + +F S
Sbjct: 425 WRPSRIMARISSTL*FAFSIRSGPERVAWRPSQFLS 532
>gb|CN820546.1|CN820546 HRO4413_F04_K07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_F04_K07, mRNA
sequence
Length = 561
Score = 27.6 bits (54), Expect = 2.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3 / +2
Query: 192 STRWRPRSGWTR 227
+TRW PR+ WTR
Sbjct: 185 TTRWPPRTSWTR 220
>gb|CN821670.1|CN821670 HRO4408_H06_P12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_H06_P12, mRNA
sequence
Length = 384
Score = 27.6 bits (54), Expect = 2.4
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -1 / -3
Query: 728 RYTQYLTTPCMLK 690
RYT+Y++ PC+LK
Sbjct: 304 RYTKYISRPCLLK 266
>gb|CN815397.1|CN815397 HRO4509_B12_C23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_B12_C23, mRNA sequence
Length = 859
Score = 27.2 bits (53), Expect = 3.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3 / +3
Query: 135 PSGLNASSSARPMFLEMSPGTSLSRWKVSPTSRRW 31
PS + +S A P +P +S SR SPT RW
Sbjct: 354 PSCRSTASGAAPSAPPRAPTSSSSRSA*SPTPPRW 458
>gb|CN817547.1|CN817547 HRO4463_G08_M15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_G08_M15, mRNA sequence
Length = 273
Score = 27.2 bits (53), Expect = 3.4
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2 / -1
Query: 247 AGGAHPGLVQPDLGLHLVEDGGPAGVRHPEDGVPVGDAERLERVVQR 107
AG L + L LVED G H D V D ERV +R
Sbjct: 156 AGALIDPLHRSPLADDLVEDAGVLEAEHDADAQDVADGAAGERVGER 16
>gb|CN819088.1|CN819088 HRO4455_D06_G11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_D06_G11, mRNA sequence
Length = 837
Score = 27.2 bits (53), Expect = 3.4
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2 / +1
Query: 247 AGGAHPGLVQPDLGLHLVEDGGPAGVRHPEDGVPVGDAERLERVVQR 107
AG L + L LVED G H D V D ERV +R
Sbjct: 94 AGALIDPLHRSPLADDLVEDAGVLEAEHDADAQDVADGAAGERVGER 234
>gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene cluster, complete sequence
Length = 13990
Score = 27.2 bits (53), Expect = 3.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3 / -3
Query: 21 PSTATSARWGSPSTCSRTCPG 83
PST+ +A +PST +RT PG
Sbjct: 13283 PSTSRAAPAPAPSTTTRTTPG 13221
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete
sequence
Length = 16091
Score = 27.2 bits (53), Expect = 3.4
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -3 / +3
Query: 384 PKPKRTPQSRPSPVVACPSSAERLRISSRMKRTQALDMLPYSER 253
P P+ P RP P A P A + + D++P S R
Sbjct: 879 PPPRELPLLRPGPPSATPPPASTTPARALQHALRRRDLVPPSPR 1010
>gb|CN814783.1|CN814783 HRO4502_D11_G22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_D11_G22, mRNA sequence
Length = 479
Score = 23.5 bits (45), Expect(2) = 4.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1 / +1
Query: 64 AQGRARAHLQEHRPRAGRRVQ 126
A+GR AHL+ H RR Q
Sbjct: 82 AEGRREAHLRAHLRGDPRRAQ 144
Score = 21.7 bits (41), Expect(2) = 4.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3 / +3
Query: 171 TPAGPPSSTRWRPRSGWT 224
TP+ PS+ RP WT
Sbjct: 171 TPSPTPSTPAARPSPPWT 224
>emb|AX458011.1| Sequence 3 from Patent WO0246387
Length = 1323
Score = 24.0 bits (46), Expect(2) = 4.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2 / -1
Query: 349 ARGGLSVLGGALAHLVEDEE 290
A G VLGG L LVE +E
Sbjct: 762 ALGRAHVLGGELGELVEPQE 703
Score = 22.6 bits (43), Expect(2) = 4.4
Identities = 14/57 (24%), Positives = 21/57 (36%)
Frame = -3 / -2
Query: 171 CATQKMEFQSEMPSGLNASSSARPMFLEMSPGTSLSRWKVSPTSRRWPSMAPSESGR 1
CA +E SG ++ RP S S + WK S R + + G+
Sbjct: 242 CAEFPVERSDRAASGAPSAKEKRPAAEAASAHQSSTWWKESTGKRSLRGLTRTTRGK 72
>gb|CN817629.1|CN817629 HRO4463_B12_C23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_B12_C23, mRNA sequence
Length = 781
Score = 26.7 bits (52), Expect = 4.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3 / -2
Query: 411 TTVSTVSPGPKPKRTPQSRPSPVVA 337
T ST PGP P +PSP++A
Sbjct: 369 TPSSTTHPGPIATSGPIRQPSPILA 295
>gb|CN817872.1|CN817872 HRO4462_E06_J12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_E06_J12, mRNA sequence
Length = 530
Score = 26.7 bits (52), Expect = 4.6
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = +2 / +3
Query: 224 KARMRATRHVLSEYGNMSSACVLFI 298
++ ++ T H + EYG ++ AC +++
Sbjct: 147 RSLLQNTEHTVIEYGTVTIACTVYV 221
>gb|CN815631.1|CN815631 HRO4513_G09_M17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_G09_M17, mRNA sequence
Length = 389
Score = 26.3 bits (51), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3 / +3
Query: 378 PKRTPQSRPSPVVACPSSA 322
P+R P SRP+P SS+
Sbjct: 51 PRRRPSSRPTPTTCTSSSS 107
>gb|CN817002.1|CN817002 HRO4527_B09_D17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_B09_D17, mRNA sequence
Length = 793
Score = 26.3 bits (51), Expect = 6.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3 / -1
Query: 249 WRVARILALSSPTLASTWSRMAGPPGC 169
W R AL SP L TW+R A P C
Sbjct: 340 WTS*RGEALRSPAL*CTWTRAALRPCC 260
>gb|CN817700.1|CN817700 HRO4461_G05_N09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_G05_N09, mRNA sequence
Length = 483
Score = 26.3 bits (51), Expect = 6.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1 / -1
Query: 67 QGRARAHLQEHRPRAGRR 120
QGR RA RPR GRR
Sbjct: 96 QGRTRAWRGRRRPRRGRR 43
>gb|CN817827.1|CN817827 HRO4462_G12_N24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_G12_N24, mRNA sequence
Length = 730
Score = 26.3 bits (51), Expect = 6.3
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3 / -2
Query: 189 SSTRWRPRSGWTRPGC 236
S RWR +GW R C
Sbjct: 51 SGCRWRCNTGWLRASC 4
>gb|CN820089.1|CN820089 HRO4411_A01_B01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_A01_B01, mRNA
sequence
Length = 354
Score = 26.3 bits (51), Expect = 6.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3 / +3
Query: 414 STTVSTVSPGPKPKRTPQSRPSPVVACPSSAE 319
STT S P P R+P +P P +AE
Sbjct: 63 STTRSPCRPSQSPSRSPTRTTTPSHPLPHTAE 158
>gb|CN820724.1|CN820724 HRO4416_H04_P08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_H04_P08, mRNA
sequence
Length = 513
Score = 26.3 bits (51), Expect = 6.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3 / -2
Query: 78 GTSLSRWKVSPTSRRWPSMAPSES 7
GTS RW + + R WPS+ S
Sbjct: 260 GTSHRRWHSTSSVRPWPSLQKHRS 189
>gb|CN820960.1|CN820960 HRO4421_H10_O19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_H10_O19, mRNA
sequence
Length = 900
Score = 26.3 bits (51), Expect = 6.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3 / +2
Query: 408 TVSTVSPGPKPKRTPQSRPSPV 343
T+ P PKP+ P+ +P P+
Sbjct: 8 TLPKTEPKPKPEPKPEPKPEPM 73
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
Length = 3467
Score = 26.3 bits (51), Expect = 6.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3 / +3
Query: 402 STVSPGPKPKRTPQSRPSPVVACPSSAERLRISSRM 295
ST P P P P P P S+ + R +SRM
Sbjct: 504 STPLPPPPPSSPPPRSAPPPGPPPRSSRKQRAASRM 611
>gb|AF003527.1|AF003527 Avena vaviloviana knotted-1 homeobox protein gene, partial cds
Length = 285
Score = 26.3 bits (51), Expect = 6.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +3
Query: 195 TRWRPRSGWTR 227
+RWR R GWTR
Sbjct: 204 SRWRRRRGWTR 236
>gb|CN816085.1|CN816085 HRO4516_G08_N16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_G08_N16, mRNA sequence
Length = 757
Score = 25.8 bits (50), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3 / +3
Query: 21 PSTATSARWGSPSTCSRTCPG 83
P+ T +GS STC R C G
Sbjct: 165 PAYITCRAFGSVSTCCRYCTG 227
>gb|CN816620.1|CN816620 HRO4522_H08_O16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_H08_O16, mRNA sequence
Length = 630
Score = 25.8 bits (50), Expect = 8.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3 / -2
Query: 399 TVSPGPKPKRTPQSRPSPVVACP 331
T P P+P+ + RP P CP
Sbjct: 149 TARPRPRPRLKLRPRPRPPRVCP 81
>gb|CN816680.1|CN816680 HRO4523_E09_J17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_E09_J17, mRNA sequence
Length = 844
Score = 25.8 bits (50), Expect = 8.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3 / -1
Query: 390 PGPKPKRTPQSRPSPVVACPSSAERLRISSRM 295
P P+P P P P VA ++ L SS +
Sbjct: 181 PRPRPPPRPPRPPDPKVAVTTAVSTLGFSSEV 86
>gb|CN817509.1|CN817509 HRO4454_G05_N10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_G05_N10, mRNA sequence
Length = 480
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1 / -1
Query: 452 RRWPLRW*WGRC 417
RRW LR+ W RC
Sbjct: 96 RRWYLRYGWSRC 61
>gb|CN817582.1|CN817582 HRO4463_E08_I15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4463_E08_I15, mRNA
sequence
Length = 424
Score = 25.8 bits (50), Expect = 8.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3 / +2
Query: 15 RAPSTATSARWGSPSTCSRT 74
RAP+++ RW SP+ S T
Sbjct: 26 RAPASSCPGRWTSPTRASST 85
>gb|CN817775.1|CN817775 HRO4459_A10_A19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_A10_A19, mRNA sequence
Length = 559
Score = 25.8 bits (50), Expect = 8.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2 / -3
Query: 397 GESRAEAEEDAPVEALARGG 338
GES +E EDAP+ GG
Sbjct: 266 GESASELHEDAPILCTPSGG 207
>gb|CN817952.1|CN817952 HRO4453_C12_F23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_C12_F23, mRNA sequence
Length = 469
Score = 25.8 bits (50), Expect = 8.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3 / +2
Query: 15 RAPSTATSARWGSPSTCSRT 74
RAP+++ RW SP+ S T
Sbjct: 146 RAPASSCPGRWTSPTRASST 205
>gb|CN818008.1|CN818008 HRO4472_G03_M06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_G03_M06, mRNA sequence
Length = 703
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / +1
Query: 390 PGPKPKRTPQSRPSPV 343
P PKP+ PQ +P P+
Sbjct: 265 PEPKPEPKPQPKPKPM 312
>gb|CN818030.1|CN818030 HRO4472_D10_G20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_D10_G20, mRNA sequence
Length = 638
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / +2
Query: 390 PGPKPKRTPQSRPSPV 343
P PKP+ PQ +P P+
Sbjct: 125 PEPKPEPKPQPKPKPM 172
>gb|CN818103.1|CN818103 HRO4456_F03_K06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_F03_K06, mRNA sequence
Length = 552
Score = 25.8 bits (50), Expect = 8.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3 / +3
Query: 75 TSLSRWKVSPTSRRWPSMAPSES 7
T+ RW + T+RRW + S S
Sbjct: 87 TTKGRWPAASTTRRWGTRTTSTS 155
>gb|CN818992.1|CN818992 HRO4455_F12_K23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_F12_K23, mRNA sequence
Length = 468
Score = 25.8 bits (50), Expect = 8.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3 / +1
Query: 60 WKVSPTSRRWP 28
W+ P+SRRWP
Sbjct: 418 WRRGPSSRRWP 450
>gb|CN819367.1|CN819367 HRO4405_B06_C11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_B06_C11, mRNA
sequence
Length = 773
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / +3
Query: 390 PGPKPKRTPQSRPSPV 343
P PKP+ PQ +P P+
Sbjct: 354 PEPKPEPKPQPKPKPM 401
>gb|CN819405.1|CN819405 HRO4405_F04_K07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_F04_K07, mRNA
sequence
Length = 508
Score = 25.8 bits (50), Expect = 8.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2 / -3
Query: 397 GESRAEAEEDAPVEALARGG 338
GES +E EDAP+ GG
Sbjct: 242 GESASELHEDAPILCTPSGG 183
>gb|CN819526.1|CN819526 HRO4401_B11_C21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_B11_C21, mRNA
sequence
Length = 830
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / +2
Query: 390 PGPKPKRTPQSRPSPV 343
P PKP+ PQ +P P+
Sbjct: 407 PEPKPEPKPQPKPKPM 454
>gb|CN819639.1|CN819639 HRO4402_E03_I06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_E03_I06, mRNA
sequence
Length = 596
Score = 25.8 bits (50), Expect = 8.7
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +3 / -3
Query: 168 RTPAGPPSSTRWRPRSGWTR 227
R P P RW PR W R
Sbjct: 243 RPPPPPRRRERWPPRRAWRR 184
>gb|CN820207.1|CN820207 HRO4412_E09_J18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_E09_J18, mRNA
sequence
Length = 763
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / +3
Query: 390 PGPKPKRTPQSRPSPV 343
P PKP+ PQ +P P+
Sbjct: 621 PEPKPEPKPQPKPKPM 668
>gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_G11_M22, mRNA
sequence
Length = 595
Score = 25.8 bits (50), Expect = 8.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3 / +3
Query: 15 RAPSTATSARWGSPSTCSRT 74
RAP+++ RW SP+ S T
Sbjct: 306 RAPASSCPGRWTSPTRASST 365
>gb|CN820910.1|CN820910 HRO4421_D03_G05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_D03_G05, mRNA
sequence
Length = 643
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / +1
Query: 390 PGPKPKRTPQSRPSPV 343
P PKP+ PQ +P P+
Sbjct: 544 PEPKPEPKPQPKPKPM 591
>gb|CN820986.1|CN820986 HRO4422_C02_E04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_C02_E04, mRNA
sequence
Length = 524
Score = 25.8 bits (50), Expect = 8.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2 / -2
Query: 397 GESRAEAEEDAPVEALARGG 338
GES +E EDAP+ GG
Sbjct: 253 GESASELHEDAPILCTPSGG 194
>gb|CN821200.1|CN821200 HRO4428_F03_L06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_F03_L06, mRNA
sequence
Length = 253
Score = 25.8 bits (50), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3 / +1
Query: 399 TVSPGPKPKRTPQSRPSPVVACPSSAERLR 310
+ +P P R S PSP+ PSS R+R
Sbjct: 16 SAAPTTTP*RLAPSTPSPLE*IPSSLRRVR 105
>gb|CN821291.1|CN821291 HRO4423_F09_L17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_F09_L17, mRNA
sequence
Length = 891
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / +2
Query: 390 PGPKPKRTPQSRPSPV 343
P PKP+ PQ +P P+
Sbjct: 413 PEPKPEPKPQPKPKPM 460
>gb|CN821489.1|CN821489 HRO4425_H07_O13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_H07_O13, mRNA
sequence
Length = 850
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / +3
Query: 390 PGPKPKRTPQSRPSPV 343
P PKP+ PQ +P P+
Sbjct: 621 PEPKPEPKPQPKPKPM 668
>emb|AX004618.1| Sequence 1 from Patent WO9915667
Length = 2324
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3 / +2
Query: 177 AGPPSSTRWRPR 212
AG P+ RWRPR
Sbjct: 92 AGEPAQARWRPR 127
>dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 1, complete cds
Length = 1755
Score = 25.8 bits (50), Expect = 8.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3 / -2
Query: 393 SPGPKPKRTPQSRPSPVVACPSSAER 316
+P P+ R+P++RP A P S R
Sbjct: 416 APPPRCSRSPRARPRRGPAAPPSGRR 339
>gb|AY847063.1| Avena sativa Aux/IAA2 mRNA, partial cds
Length = 330
Score = 25.8 bits (50), Expect = 8.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2 / +1
Query: 67 EQVEGEPHLAEVAVDGA 17
E+ +G PH +V++DGA
Sbjct: 82 EEAQGGPHYVKVSMDGA 132
>emb|AJ010728.1|AFA010728 Avena fatua alpha-Amy2A gene, exons 1-4
Length = 3694
Score = 25.8 bits (50), Expect = 8.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3 / -1
Query: 393 SPGPKPKRTPQSRPSPVVACPSSAER 316
S G +P RT SRP CP+ R
Sbjct: 2509 SAGARPGRTRASRPRQSAWCPTPRPR 2432
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,065,627
Number of Sequences: 8143
Number of extensions: 90062
Number of successful extensions: 1953
Number of sequences better than 10.0: 70
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 255640980
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)