TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1716424.2.5
         (1999 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815399.1|CN815399  HRO4509_C02_E03ZS5 Lib AA071E1X Aven...   104   6e-043
gb|CN819820.1|CN819820  HRO4404_D10_H20ZS5 Lib AA069E1X Aven...   104   7e-023

>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4509_C02_E03, mRNA sequence
          Length = 660

 Score =  104 bits (222), Expect(3) = 6e-043
 Identities = 41/96 (42%), Positives = 58/96 (60%)
 Frame = -2 / +1

                                                                       
Query: 810 KLQTEVRTTMRSPDGKKLDMLAEEDLGSMPYLKATIKETLRLHPPAPFLLPHYSTADSEI 631
           ++  +V+  +R   GK   ++   DLG + Y++  IKE LRLHPP P LLP  +  D EI
Sbjct: 85  EVMAKVQKEVREVLGKDQVVITNSDLGELHYMRMVIKEVLRLHPPFPLLLPRETREDCEI 264

                                               
Query: 630 DGYFVPAGTRVLVNAWALGRDRTTWEKPEEFMPERF 523
            GY +P GT + +NA+A+  D   W+ P EF PERF
Sbjct: 265 MGYNIPKGTNIYINAFAISHDPVFWDNPTEFNPERF 372




 Score = 78.0 bits (164), Expect(3) = 6e-043
 Identities = 28/47 (59%), Positives = 37/47 (78%)
 Frame = -2 / +1

                                                          
Query: 501 DVHMKGKDLRFIPFGSGRRICPGMNFGFATMEIMLANLMYHFDWEVP 361
           +V+  G   +F PFGSGRRICPG+ F  +T+EI LANL+YHFDW++P
Sbjct: 382 NVNYDGTHFKFTPFGSGRRICPGIFFATSTIEIALANLLYHFDWKLP 522




 Score = 26.3 bits (51), Expect(3) = 6e-043
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2 / +1

                               
Query: 345 VSMDESFGLTLRRKEKLLLV 286
           V M E FG+T+RRK  L LV
Sbjct: 535 VDMLEKFGITVRRKFDLQLV 594



>gb|CN819820.1|CN819820 HRO4404_D10_H20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4404_D10_H20, mRNA
           sequence
          Length = 379

 Score =  104 bits (221), Expect = 7e-023
 Identities = 40/62 (64%), Positives = 48/62 (77%)
 Frame = -2 / +3

                                                                       
Query: 468 IPFGSGRRICPGMNFGFATMEIMLANLMYHFDWEVPGSAAGVSMDESFGLTLRRKEKLLL 289
           +PFGSGRRICPG+NF    +E+MLANL+YHFDWE+P     V M E F L++RRKEKL L
Sbjct: 3   VPFGSGRRICPGINFANVAVEMMLANLVYHFDWELPAEKKEVDMKEVFSLSIRRKEKLHL 182

             
Query: 288 VP 283
           VP
Sbjct: 183 VP 188



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 18,862,550
Number of Sequences: 8143
Number of extensions: 270253
Number of successful extensions: 2217
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 744652240
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)