TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716352.2.1
(990 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817691.1|CN817691 HRO4453_G11_N21ZS5 Lib AA070E1X Aven... 106 5e-024
>gb|CN817691.1|CN817691 HRO4453_G11_N21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_G11_N21, mRNA sequence
Length = 565
Score = 106 bits (227), Expect = 5e-024
Identities = 43/80 (53%), Positives = 56/80 (70%)
Frame = -3 / +2
Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
+ ++G L W +D +L + FS GEV A V+ DRETGRSRGFGFV + D AISA
Sbjct: 41 RAYVGNLPWQAEDSRLVQLFSQHGEVLNATVVYDRETGRSRGFGFVTMASKDDLDSAISA 220
Query: 460 MDGKEIDGRQVRVNMANERP 401
+DG+E+DGR +RVN+A ERP
Sbjct: 221 LDGEELDGRPLRVNVAAERP 280
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,698,928
Number of Sequences: 8143
Number of extensions: 122173
Number of successful extensions: 692
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 348158668
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)