TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716236.2.1
(843 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821289.1|CN821289 HRO4423_F05_L09ZS5 Lib AA069E1X Aven... 337 1e-093
gb|CN819537.1|CN819537 HRO4401_C11_E21ZS5 Lib AA069E1X Aven... 292 7e-080
gb|CN821194.1|CN821194 HRO4428_E09_J18ZS5 Lib AA069E1X Aven... 256 3e-069
gb|CN814731.1|CN814731 HRO4501_H05_O09ZS5 Lib AA071E1X Aven... 243 4e-065
gb|CN816965.1|CN816965 HRO4526_G07_M14ZS5 Lib AA071E1X Aven... 226 3e-060
gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Aven... 200 3e-052
gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Aven... 200 3e-052
gb|CN814992.1|CN814992 HRO4504_F10_L20ZS5 Lib AA071E1X Aven... 199 4e-052
gb|CN816098.1|CN816098 HRO4517_A02_A03ZS5 Lib AA071E1X Aven... 172 5e-044
gb|CN814688.1|CN814688 HRO4501_D09_G17ZS5 Lib AA071E1X Aven... 170 3e-043
gb|CN815364.1|CN815364 HRO4508_H03_P06ZS5 Lib AA071E1X Aven... 158 1e-039
gb|CN817480.1|CN817480 HRO4466_C01_F02ZS5 Lib AA070E1X Aven... 152 8e-038
gb|CN814697.1|CN814697 HRO4501_E06_I11ZS5 Lib AA071E1X Aven... 124 7e-036
gb|CN816654.1|CN816654 HRO4523_C06_F11ZS5 Lib AA071E1X Aven... 141 1e-034
gb|CN815849.1|CN815849 HRO4511_B08_D15ZS5 Lib AA071E1X Aven... 138 2e-033
gb|CN820944.1|CN820944 HRO4421_G05_M09ZS5 Lib AA069E1X Aven... 133 5e-032
gb|CN815167.1|CN815167 HRO4506_F04_K08ZS5 Lib AA071E1X Aven... 121 2e-028
gb|CN821493.1|CN821493 HRO4425_H11_O21ZS5 Lib AA069E1X Aven... 119 5e-028
gb|CN820524.1|CN820524 HRO4413_D03_G05ZS5 Lib AA069E1X Aven... 109 4e-027
gb|CN817131.1|CN817131 HRO4528_E12_J24ZS5 Lib AA071E1X Aven... 71 5e-023
gb|CN816956.1|CN816956 HRO4526_F10_K20ZS5 Lib AA071E1X Aven... 102 7e-023
gb|CN818122.1|CN818122 HRO4471_F01_K01ZS5 Lib AA070E1X Aven... 100 4e-022
>gb|CN821289.1|CN821289 HRO4423_F05_L09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_F05_L09, mRNA
sequence
Length = 648
Score = 337 bits (731), Expect = 1e-093
Identities = 132/143 (92%), Positives = 137/143 (95%)
Frame = -1 / -2
Query: 693 LKELKDLQKDPPTSCSAGPAGEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPK 514
LKELKDLQ+DPPTSCSAGP EDMFHWQATIMGP DSPY+GGVFLV IHFPPDYPFKPPK
Sbjct: 647 LKELKDLQRDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPK 468
Query: 513 VSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHM 334
V+FKTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHM
Sbjct: 467 VAFKTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHM 288
Query: 333 YKTDRPKYEATARSWTQKYAMG* 265
YK DR KYE+TARSWTQKYAMG*
Sbjct: 287 YKADRTKYESTARSWTQKYAMG* 219
Score = 147 bits (316), Expect(2) = 3e-053
Identities = 64/82 (78%), Positives = 66/82 (80%)
Frame = +2 / +1
Query: 269 PMAYFWVQLRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLR 448
PMAYFWVQL AV SY RS LYM*AISGT GSSG GSVSREQIE T EIV AGLHCS +
Sbjct: 223 PMAYFWVQLLAVDSYFVRSALYM*AISGTSGSSGFGSVSREQIERSTFEIVSAGLHCSFK 402
Query: 449 MSRHMLPLLLMFGWKTFVLKDT 514
+SR MLPLLL FGW TFVLK T
Sbjct: 403 ISRQMLPLLLTFGWNTFVLKAT 468
Score = 140 bits (301), Expect = 2e-034
Identities = 67/142 (47%), Positives = 96/142 (67%)
Frame = +1 / +3
Query: 268 SHGIFLGPAAGCCLVLRPIRLVHVSNLRDKRIVWVGISKQGADRKQNLRDCQSRAPLLLK 447
+HG+ LGPA LVL IR VHVSNLR++ IV V + + GAD +++L DCQ R PLLL+
Sbjct: 222 THGVLLGPAPRGRLVLCSIRFVHVSNLRNQWIVGVWVRQ*GAD*EEHL*DCQCRTPLLLQ 401
Query: 448 NVETYASITIDVWMEDLRLKRYLWRLERVVRGEMNVH*ENTSSIWTIRRTHDGCLPVEHI 627
+++ A+I ++VWME L + L ERVVR +MN + E+TS++ + RTH+ CLPV+HI
Sbjct: 402 DIKADAAIAVNVWMEHLCFESDLRWFERVVRRKMNCNQEDTSTVRAV*RTHNRCLPVKHI 581
Query: 628 LTSRTCTA*RWRVLLQVL*FLE 693
+ R A R+ LQ+L L+
Sbjct: 582 FSDRPRAAGGRRIPLQILELLQ 647
Score = 135 bits (290), Expect = 8e-033
Identities = 65/142 (45%), Positives = 88/142 (61%)
Frame = -3 / -1
Query: 691 QGIKGPAKGPSNVMQCRSCW*GYVPLAGNHHGSS**SICWRCFLSEHSFPPGLPFQASKG 512
+G +G A+G ++++Q +C * YV LAGN +GS + WRC L +SF GLP Q + G
Sbjct: 645 EGAQGSAEGSADLLQRGACR*RYVSLAGNDYGSVRQPLQWRCLLGYNSFSSGLPVQTT*G 466
Query: 511 IF*DEGLPSKHQ**WKHMSRHS*GAVEPCFDNL*GFAFYLLPAY*SQPRRSSCP*DCSHV 332
F ++G+PSK W+H+ + GAVE C DNL G LLP +PRRS+ DCSHV
Sbjct: 465 RFQNKGVPSKR*QQWQHLP*YLEGAVESCTDNLKGAPLNLLPTDGPKPRRSTGSGDCSHV 286
Query: 331 QDGSA*VRGNSPQLDPEICHGM 266
Q GS VR +LDPE+ HG+
Sbjct: 285 QSGSNKVRVYREELDPEVRHGL 220
Score = 110 bits (235), Expect = 3e-025
Identities = 65/140 (46%), Positives = 69/140 (49%)
Frame = +3 / +2
Query: 270 PWHISGSSCGLLPRT*ADPSCTCEQSQGQEDRLGWDQ*AGSR*KAKP*RLSKQGSTAP*E 449
PW SGSS RT DP CTCEQS DR G GSR + P RLS Q STAP
Sbjct: 224 PWRTSGSSSSR*TRTLFDPLCTCEQSPEPVDRRGLGPSVGSRLRGAPLRLSVQDSTAPSR 403
Query: 450 CRDICFHYY*CLDGRPSS*KIPLEA*KGSPGGNECSLRKHLQHMDYQEDP*WLPASGTYP 629
+ C H * LDG P *K P * GSP NE R+HL DP* LPAS TY
Sbjct: 404 YQGRCCHCC*RLDGTPLF*KRP*VV*TGSPEENEL*PRRHLHCKGCLTDP*SLPASETYL 583
Query: 630 HQQDLHCMTLEGPFAGPLIP 689
+Q C P A P P
Sbjct: 584 QRQAPRCRRSADPSADP*AP 643
Score = 76.2 bits (160), Expect(2) = 3e-053
Identities = 31/46 (67%), Positives = 36/46 (78%)
Frame = +2 / +1
Query: 557 TKKTPPAYGLSGGPMMVACQWNISSPAGPALHDVGGSFCRSFNSLR 694
TKKTPP GLS GP++VACQ NISS GPAL +VGGS CRS +S +
Sbjct: 511 TKKTPPL*GLSDGPIIVACQ*NISSATGPALQEVGGSLCRSLSSFK 648
>gb|CN819537.1|CN819537 HRO4401_C11_E21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_C11_E21, mRNA
sequence
Length = 657
Score = 292 bits (631), Expect = 7e-080
Identities = 115/120 (95%), Positives = 116/120 (96%)
Frame = -1 / +3
Query: 621 FHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILK 442
FHW TIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILK
Sbjct: 12 FHWLPTIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILK 191
Query: 441 EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATARSWTQKYAMG*K 262
EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE TARSWTQKYAMG*+
Sbjct: 192 EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG*R 371
Score = 177 bits (381), Expect = 2e-045
Identities = 77/121 (63%), Positives = 93/121 (76%)
Frame = +1 / -2
Query: 259 SFSSHGIFLGPAAGCCLVLRPIRLVHVSNLRDKRIVWVGISKQGADRKQNLRDCQSRAPL 438
S S+HG+ L PAAGCCLVL P+RLVHV NLRDK +V VGI +QG DR+Q L D QSRAPL
Sbjct: 374 SSSTHGVLLRPAAGCCLVL*PVRLVHVGNLRDKGVVRVGIGQQGTDREQYLGDRQSRAPL 195
Query: 439 LLKNVETYASITIDVWMEDLRLKRYLWRLERVVRGEMNVH*ENTSSIWTIRRTHDGCLPV 618
LLKN++ YASI +D+ MEDL L+RYL E V+R +MNVH*EN S I T+R +H+ PV
Sbjct: 194 LLKNIKAYASIAVDIRMEDLCLERYLRGFEGVIRRKMNVH*ENASGIGTVRGSHNRWKPV 15
Query: 619 E 621
E
Sbjct: 14 E 12
Score = 175 bits (376), Expect = 1e-044
Identities = 77/120 (64%), Positives = 87/120 (72%)
Frame = -3 / +2
Query: 622 VPLAGNHHGSS**SICWRCFLSEHSFPPGLPFQASKGIF*DEGLPSKHQ**WKHMSRHS* 443
VPLA N +G+ * S+C R FLSEHSF GLP Q +GIF D+GLPS +Q WKHM +S*
Sbjct: 11 VPLASNDYGTP*QSLCRRRFLSEHSFSSGLPLQTPEGIFQDKGLPS*YQQQWKHMP*YS* 190
Query: 442 GAVEPCFDNL*GFAFYLLPAY*SQPRRSSCP*DCSHVQDGSA*VRGNSPQLDPEICHGMK 263
GAVEPCFD+L G A YL PA SQP R CP*DC HVQDG VR NSPQLD E+ HG+K
Sbjct: 191 GAVEPCFDDLQGIALYLFPADRSQPGRPPCP*DCPHVQDGPVKVRDNSPQLDAEVRHGLK 370
Score = 171 bits (367), Expect(2) = 1e-052
Identities = 74/83 (89%), Positives = 76/83 (91%)
Frame = +2 / -3
Query: 269 PMAYFWVQLRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLR 448
PMAYF VQLRAV SY RSVLYM AISGTRGSSGLGSVSREQIES TLEIVKAGLHCSLR
Sbjct: 364 PMAYFCVQLRAVVSYFDRSVLYMWAISGTRGSSGLGSVSREQIESNTLEIVKAGLHCSLR 185
Query: 449 MSRHMLPLLLMFGWKTFVLKDTF 517
+SRHMLPLLL+ GWKTFVLKDTF
Sbjct: 184 ISRHMLPLLLILGWKTFVLKDTF 116
Score = 166 bits (356), Expect = 6e-042
Identities = 78/120 (65%), Positives = 85/120 (70%)
Frame = +3 / -1
Query: 264 FIPWHISGSSCGLLPRT*ADPSCTCEQSQGQEDRLGWDQ*AGSR*KAKP*RLSKQGSTAP 443
F PW S SSCGLL RT PSCTC QSQGQ R GWD+ AG+R*+A P R SKQGSTAP
Sbjct: 369 FNPWRTSASSCGLLSRTLTGPSCTCGQSQGQGGRPGWDRSAGNR*RAIPWRSSKQGSTAP 190
Query: 444 *ECRDICFHYY*CLDGRPSS*KIPLEA*KGSPGGNECSLRKHLQHMDYQEDP*WLPASGT 623
*E + ICFH * DGRP S*KIP *+G+P NECSLRK L+H D Q P* L ASGT
Sbjct: 189 *EYQGICFHCC*Y*DGRPLS*KIPSGV*RGNPEENECSLRKRLRHRDCQGVP*SLEASGT 10
Score = 105 bits (223), Expect = 1e-023
Identities = 60/119 (50%), Positives = 64/119 (53%)
Frame = -2 / +1
Query: 620 STGRQPSWVLLIVHMLEVFS**TFISPRTTXXXXXXXXXXXXXSIQTSIVMEAYVSTFLR 441
STG Q W L V M E FS**TFI R T SI S MEAY FLR
Sbjct: 13 STGFQRLWDPLTVPMPEAFS**TFIFLRITPSNPRRYLSRQRSSILISTAMEAYALIFLR 192
Query: 440 SSGALL*QSLRFCFLSAPCLLIPTQXXXXXXXXXXXXXRIGLSTRQQPAAGPRNMPWDE 264
SSGALL*+S R+C LS PC IPT+ R G STRQQPAAG R+ PW E
Sbjct: 193 SSGALL*RSPRYCSLSVPC*PIPTRTTPLSLRLPTCTRRTGQSTRQQPAAGRRSTPWVE 369
Score = 51.0 bits (105), Expect(2) = 1e-052
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +2 / -3
Query: 551 MFTKKTPPAYGLSGGPMMVACQWN 622
MFTKKTPPA GLSGGP++V QWN
Sbjct: 82 MFTKKTPPA*GLSGGPIIVGSQWN 11
>gb|CN821194.1|CN821194 HRO4428_E09_J18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_E09_J18, mRNA
sequence
Length = 592
Score = 256 bits (554), Expect = 3e-069
Identities = 101/107 (94%), Positives = 105/107 (98%)
Frame = -1 / +2
Query: 585 SPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKV 406
SP+ GG+FLVNIHFPPDYPFKPPKVSF+TKVFHPNINSNGSICLDILKEQWSPALTISKV
Sbjct: 11 SPFTGGLFLVNIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKV 190
Query: 405 LLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATARSWTQKYAMG* 265
LLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE+TARSWTQKYAMG*
Sbjct: 191 LLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG* 331
Score = 145 bits (312), Expect(2) = 1e-036
Identities = 63/83 (75%), Positives = 69/83 (83%)
Frame = +2 / -2
Query: 269 PMAYFWVQLRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLR 448
PMAYF VQ RAV SYL SVLYM AISGT GSSG GSVS EQI+ +T ++V+AGLHCSLR
Sbjct: 327 PMAYFCVQERAVDSYLALSVLYMWAISGTSGSSGFGSVSNEQIDRRTFDMVRAGLHCSLR 148
Query: 449 MSRHMLPLLLMFGWKTFVLKDTF 517
MSR MLPLLLMFGWKT V K+TF
Sbjct: 147 MSRQMLPLLLMFGWKTLVRKETF 79
Score = 109 bits (232), Expect = 8e-025
Identities = 52/108 (48%), Positives = 74/108 (68%)
Frame = +1 / -1
Query: 268 SHGIFLGPAAGCCLVLRPIRLVHVSNLRDKRIVWVGISKQGADRKQNLRDCQSRAPLLLK 447
+HG+ L P A LVL PI LVHV +LR +R++ V + +Q AD +++L QSRAPLLL+
Sbjct: 328 AHGVLLRPGASSGLVLGPISLVHVGDLRHQRVIRVRVRQQRAD*QEDL*YGQSRAPLLLE 149
Query: 448 NVETYASITIDVWMEDLRLKRYLWRLERVVRGEMNVH*ENTSSIWTIR 591
NV+ A++ +DV +EDL +R L LER++ +MNVH E T+S W R
Sbjct: 148 NVKANAAVAVDVRVEDLGAERDLRWLERIIWWKMNVHQE*TTSEWAPR 5
Score = 22.1 bits (42), Expect(2) = 1e-036
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2 / -2
Query: 551 MFTKKTPPAYGL 586
MFTK PP GL
Sbjct: 45 MFTKNRPPVNGL 10
>gb|CN814731.1|CN814731 HRO4501_H05_O09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_H05_O09, mRNA sequence
Length = 624
Score = 243 bits (524), Expect = 4e-065
Identities = 95/111 (85%), Positives = 102/111 (91%)
Frame = -1 / +2
Query: 597 GPPDSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALT 418
G DSPYAGG+F VNIHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALT
Sbjct: 2 GTRDSPYAGGIFFVNIHFPPDYPFKPPKVNFETKVYHPNINSNGSICLDILKEQWSPALT 181
Query: 417 ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATARSWTQKYAMG* 265
ISKVLLSI SLLTDPNPDDPLVPEIAH+YK R +YE TA +WTQKYAMG*
Sbjct: 182 ISKVLLSISSLLTDPNPDDPLVPEIAHLYKNQRTRYEETASAWTQKYAMG* 334
Score = 113 bits (241), Expect(2) = 1e-029
Identities = 54/83 (65%), Positives = 59/83 (71%)
Frame = +2 / -1
Query: 341 AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLRMSRHMLPLLLMFGWKTFVLKDTFX 520
AISGTRGSSGLGSV RE +E +TL++V+AGLHCSLRMSR MLPL LMFG TFV K T
Sbjct: 258 AISGTRGSSGLGSVRRELMERRTLDMVRAGLHCSLRMSRQMLPLELMFG*YTFVSKFTLG 79
Query: 521 XXXXXXXXXXMFTKKTPPAYGLS 589
M TKK PPA GLS
Sbjct: 78 GLKG*SGGKWMLTKKIPPA*GLS 10
Score = 102 bits (217), Expect = 9e-023
Identities = 47/110 (42%), Positives = 72/110 (65%)
Frame = +1 / -3
Query: 265 SSHGIFLGPAAGCCLVLRPIRLVHVSNLRDKRIVWVGISKQGADRKQNLRDCQSRAPLLL 444
S+HG+ LGP G LV + LV + +LRD+ +V VG+ ++GAD +++L Q RAPLLL
Sbjct: 334 STHGVLLGPGTGGLLVAGSLVLVEMRDLRDEGVVGVGVCEKGADGEEDLGYGQGRAPLLL 155
Query: 445 KNVETYASITIDVWMEDLRLKRYLWRLERVVRGEMNVH*ENTSSIWTIRR 594
++V+ A++ +DVW+ L K + RL+ VVR EM+V EN S + + R
Sbjct: 154 EDVQADAAVGVDVWVIHLCFKIHFGRLKGVVRREMDVDKENPSRVGAVPR 5
Score = 31.3 bits (62), Expect(2) = 1e-029
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2 / -1
Query: 263 FHPMAYFWVQLRAVAS 310
+ PMAYFWVQ AV+S
Sbjct: 336 YQPMAYFWVQALAVSS 289
>gb|CN816965.1|CN816965 HRO4526_G07_M14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_G07_M14, mRNA sequence
Length = 532
Score = 226 bits (489), Expect = 3e-060
Identities = 90/93 (96%), Positives = 92/93 (98%)
Frame = -1 / +1
Query: 543 PPDYPFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPD 364
PPDYPFKPPKVSF+TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPD
Sbjct: 13 PPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPD 192
Query: 363 DPLVPEIAHMYKTDRPKYEATARSWTQKYAMG* 265
DPLVPEIAHMYKTDR KYE+TARSWTQKYAMG*
Sbjct: 193 DPLVPEIAHMYKTDRAKYESTARSWTQKYAMG* 291
Score = 148 bits (318), Expect = 1e-036
Identities = 64/83 (77%), Positives = 70/83 (84%)
Frame = +2 / -3
Query: 269 PMAYFWVQLRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLR 448
PMAYF VQ RAV SYL SVLYM AISGTRGSSG GSVS EQI+ +T ++V+AGLHCSLR
Sbjct: 287 PMAYFCVQERAVDSYLALSVLYMWAISGTRGSSGFGSVSNEQIDRRTFDMVRAGLHCSLR 108
Query: 449 MSRHMLPLLLMFGWKTFVLKDTF 517
MSR MLPLLLMFGWKT V K+TF
Sbjct: 107 MSRQMLPLLLMFGWKTLVRKETF 39
>gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_B08_C16, mRNA
sequence
Length = 560
Score = 200 bits (431), Expect = 3e-052
Identities = 78/86 (90%), Positives = 85/86 (98%)
Frame = -1 / +2
Query: 528 FKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 349
F+PPKV+F+TKVFHPNINSNGSICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVP
Sbjct: 26 FQPPKVAFRTKVFHPNINSNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVP 205
Query: 348 EIAHMYKTDRPKYEATARSWTQKYAM 271
EIAHMYKTDR KYE+TAR+WTQ+YAM
Sbjct: 206 EIAHMYKTDRHKYESTARTWTQRYAM 283
Score = 137 bits (294), Expect = 2e-033
Identities = 62/82 (75%), Positives = 67/82 (81%)
Frame = +2 / -3
Query: 272 MAYFWVQLRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLRM 451
MAY VQ+ AV SYL RSVLYM AISGTRGSSG GSVSREQ++S TLE+V+AGLH S RM
Sbjct: 282 MAYL*VQVLAVLSYLCRSVLYMWAISGTRGSSGFGSVSREQMDSNTLEMVRAGLHWSFRM 103
Query: 452 SRHMLPLLLMFGWKTFVLKDTF 517
SR MLPLLLMFGW TFV TF
Sbjct: 102 SRQMLPLLLMFGWNTFVRNATF 37
>gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_B09_D18, mRNA
sequence
Length = 540
Score = 200 bits (431), Expect = 3e-052
Identities = 78/86 (90%), Positives = 85/86 (98%)
Frame = -1 / +1
Query: 528 FKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 349
F+PPKV+F+TKVFHPNINSNGSICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVP
Sbjct: 22 FQPPKVAFRTKVFHPNINSNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVP 201
Query: 348 EIAHMYKTDRPKYEATARSWTQKYAM 271
EIAHMYKTDR KYE+TAR+WTQ+YAM
Sbjct: 202 EIAHMYKTDRHKYESTARTWTQRYAM 279
Score = 137 bits (294), Expect = 2e-033
Identities = 62/82 (75%), Positives = 67/82 (81%)
Frame = +2 / -2
Query: 272 MAYFWVQLRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLRM 451
MAY VQ+ AV SYL RSVLYM AISGTRGSSG GSVSREQ++S TLE+V+AGLH S RM
Sbjct: 278 MAYL*VQVLAVLSYLCRSVLYMWAISGTRGSSGFGSVSREQMDSNTLEMVRAGLHWSFRM 99
Query: 452 SRHMLPLLLMFGWKTFVLKDTF 517
SR MLPLLLMFGW TFV TF
Sbjct: 98 SRQMLPLLLMFGWNTFVRNATF 33
>gb|CN814992.1|CN814992 HRO4504_F10_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_F10_L20, mRNA sequence
Length = 508
Score = 199 bits (430), Expect = 4e-052
Identities = 81/84 (96%), Positives = 83/84 (98%)
Frame = -1 / +2
Query: 516 KVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH 337
KVSF+TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH
Sbjct: 2 KVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH 181
Query: 336 MYKTDRPKYEATARSWTQKYAMG* 265
MYKTDR KYE+TARSWTQKYAMG*
Sbjct: 182 MYKTDRAKYESTARSWTQKYAMG* 253
Score = 146 bits (313), Expect = 5e-036
Identities = 63/83 (75%), Positives = 69/83 (83%)
Frame = +2 / -2
Query: 269 PMAYFWVQLRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLR 448
PMAYF VQ RAV SYL SVLYM AISGTRGSSG GSVS EQI+ +T ++V+AGLHCSLR
Sbjct: 249 PMAYFCVQERAVDSYLALSVLYMWAISGTRGSSGFGSVSNEQIDRRTFDMVRAGLHCSLR 70
Query: 449 MSRHMLPLLLMFGWKTFVLKDTF 517
MSR MLPLLLMFGWKT V +TF
Sbjct: 69 MSRQMLPLLLMFGWKTLVRNETF 1
>gb|CN816098.1|CN816098 HRO4517_A02_A03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A02_A03, mRNA sequence
Length = 641
Score = 172 bits (371), Expect = 5e-044
Identities = 69/75 (92%), Positives = 73/75 (97%)
Frame = -1 / +2
Query: 516 KVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH 337
+V+FKTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH
Sbjct: 416 QVAFKTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH 595
Query: 336 MYKTDRPKYEATARS 292
MYK DR KYE+TARS
Sbjct: 596 MYKADRTKYESTARS 640
Score = 121 bits (258), Expect = 2e-028
Identities = 54/74 (72%), Positives = 57/74 (77%)
Frame = +2 / -3
Query: 293 LRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLRMSRHMLPL 472
L AV SY RS LYM*AISGT GSSG GSVS+EQIE T EIV AGLHCS ++SR MLPL
Sbjct: 639 LLAVDSYFVRSALYM*AISGTSGSSGFGSVSKEQIERSTFEIVSAGLHCSFKISRQMLPL 460
Query: 473 LLMFGWKTFVLKDT 514
LL FGW T VLK T
Sbjct: 459 LLTFGWNTLVLKAT 418
>gb|CN814688.1|CN814688 HRO4501_D09_G17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_D09_G17, mRNA sequence
Length = 564
Score = 170 bits (365), Expect = 3e-043
Identities = 69/81 (85%), Positives = 73/81 (90%)
Frame = -1 / +3
Query: 507 FKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 328
F KV+HPNINSNGSICLDILKEQWSPALTISKVLLSI SLLTDPNPDDPLVPEIAH+YK
Sbjct: 15 F*NKVYHPNINSNGSICLDILKEQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYK 194
Query: 327 TDRPKYEATARSWTQKYAMG* 265
R +YE TA +WTQKYAMG*
Sbjct: 195 NQRTRYEETASAWTQKYAMG* 257
Score = 91.8 bits (194), Expect(2) = 3e-023
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = +2 / -3
Query: 341 AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLRMSRHMLPLLLMFG 487
AISGTRGSSGLGSV RE +E +TL++V+AGLHCSLRMSR MLPL LMFG
Sbjct: 181 AISGTRGSSGLGSVRRELMERRTLDMVRAGLHCSLRMSRQMLPLELMFG 35
Score = 31.3 bits (62), Expect(2) = 3e-023
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2 / -3
Query: 263 FHPMAYFWVQLRAVAS 310
+ PMAYFWVQ AV+S
Sbjct: 259 YQPMAYFWVQALAVSS 212
>gb|CN815364.1|CN815364 HRO4508_H03_P06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H03_P06, mRNA sequence
Length = 377
Score = 158 bits (339), Expect = 1e-039
Identities = 65/68 (95%), Positives = 66/68 (97%)
Frame = -1 / +3
Query: 468 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATARSW 289
GSICLDIL EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE+TARSW
Sbjct: 3 GSICLDIL*EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSW 182
Query: 288 TQKYAMG* 265
TQKYAMG*
Sbjct: 183 TQKYAMG* 206
Score = 112 bits (240), Expect = 6e-026
Identities = 50/67 (74%), Positives = 55/67 (82%)
Frame = +2 / -2
Query: 269 PMAYFWVQLRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLR 448
PMAYF VQ RAV SYL SVLYM AISGTRGSSG GSVS EQI+ +T ++V+AGLHCS R
Sbjct: 202 PMAYFCVQERAVDSYLALSVLYMWAISGTRGSSGFGSVSNEQIDRRTFDMVRAGLHCS*R 23
Query: 449 MSRHMLP 469
MSR MLP
Sbjct: 22 MSRQMLP 2
>gb|CN817480.1|CN817480 HRO4466_C01_F02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_C01_F02, mRNA sequence
Length = 510
Score = 152 bits (326), Expect = 8e-038
Identities = 62/65 (95%), Positives = 63/65 (96%)
Frame = -1 / +2
Query: 456 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATARSWTQKY 277
LDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE TARSWTQKY
Sbjct: 14 LDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKY 193
Query: 276 AMG*K 262
AMG*+
Sbjct: 194 AMG*R 208
Score = 125 bits (267), Expect = 1e-029
Identities = 56/63 (88%), Positives = 57/63 (90%)
Frame = +2 / -1
Query: 269 PMAYFWVQLRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAGLHCSLR 448
PMAYF VQLRAV SY RSVLYM AISGTRGSSGLGSVSREQIES TLEIVKAGLHCSLR
Sbjct: 201 PMAYFCVQLRAVVSYFDRSVLYMWAISGTRGSSGLGSVSREQIESNTLEIVKAGLHCSLR 22
Query: 449 MSR 457
+SR
Sbjct: 21 ISR 13
Score = 110 bits (234), Expect = 4e-025
Identities = 46/66 (69%), Positives = 54/66 (81%)
Frame = +1 / -3
Query: 259 SFSSHGIFLGPAAGCCLVLRPIRLVHVSNLRDKRIVWVGISKQGADRKQNLRDCQSRAPL 438
S S+HG+ L PAAGCCLVL P+RLVHV NLRDK +V VGI +QG DR+Q L D QSRAPL
Sbjct: 211 SSSTHGVLLRPAAGCCLVL*PVRLVHVGNLRDKGVVRVGIGQQGTDREQYLGDRQSRAPL 32
Query: 439 LLKNVE 456
LLKN++
Sbjct: 31 LLKNIK 14
Score = 102 bits (217), Expect = 9e-023
Identities = 43/63 (68%), Positives = 47/63 (74%)
Frame = -3 / +1
Query: 451 HS*GAVEPCFDNL*GFAFYLLPAY*SQPRRSSCP*DCSHVQDGSA*VRGNSPQLDPEICH 272
+S*GAVEPCFD+L G A YL PA SQP R CP*DC HVQDG VR NSPQLD E+ H
Sbjct: 19 YS*GAVEPCFDDLQGIALYLFPADRSQPGRPPCP*DCPHVQDGPVKVRDNSPQLDAEVRH 198
Query: 271 GMK 263
G+K
Sbjct: 199 GLK 207
Score = 97.7 bits (207), Expect = 2e-021
Identities = 43/62 (69%), Positives = 46/62 (74%)
Frame = +3 / -2
Query: 264 FIPWHISGSSCGLLPRT*ADPSCTCEQSQGQEDRLGWDQ*AGSR*KAKP*RLSKQGSTAP 443
F PW S SSCGLL RT PSCTC QSQGQ R GWD+ AG+R*+A P R SKQGSTAP
Sbjct: 206 FNPWRTSASSCGLLSRTLTGPSCTCGQSQGQGGRPGWDRSAGNR*RAIPWRSSKQGSTAP 27
Query: 444 *E 449
*E
Sbjct: 26 *E 21
>gb|CN814697.1|CN814697 HRO4501_E06_I11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_E06_I11, mRNA sequence
Length = 409
Score = 124 bits (265), Expect(3) = 7e-036
Identities = 53/75 (70%), Positives = 56/75 (74%)
Frame = -1 / +1
Query: 444 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATARSWTQKYAMG* 265
+ + P ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE TARSWTQKYAMG*
Sbjct: 1 RHEVEPCFDISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG* 180
Query: 264 K*NEVETPYSALLLK 220
P A + K
Sbjct: 181 SDAPCSYPLLACMQK 225
Score = 100 bits (212), Expect(3) = 4e-027
Identities = 45/55 (81%), Positives = 47/55 (85%)
Frame = +2 / -3
Query: 266 HPMAYFWVQLRAVASYLGRSVLYM*AISGTRGSSGLGSVSREQIESKTLEIVKAG 430
HPMAYF VQLRAV SY RSVLY+ AISGTRGSSGLGSVS EQIESKTLE+ K G
Sbjct: 179 HPMAYFCVQLRAVVSYFDRSVLYIWAISGTRGSSGLGSVSSEQIESKTLEMSKQG 15
Score = 80.3 bits (169), Expect(3) = 1e-021
Identities = 35/51 (68%), Positives = 39/51 (76%)
Frame = -3 / +3
Query: 418 NL*GFAFYLLPAY*SQPRRSSCP*DCSHVQDGSA*VRGNSPQLDPEICHGM 266
+L*GFAF LL AY QP R SCP*D +VQDGS VR +SPQLD E+CHGM
Sbjct: 27 HL*GFAFNLLAAYRPQPGRPSCP*DRPYVQDGSVEVRDDSPQLDAEVCHGM 179
Score = 34.1 bits (68), Expect(3) = 7e-036
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1 / +2
Query: 228 LLKCRRLWCCPMKLFVGTYVLPF 160
LL CR+L CP KLF+G Y L F
Sbjct: 209 LLACRKLCRCPEKLFLGHYFL*F 277
Score = 29.9 bits (59), Expect(3) = 1e-021
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2 / +3
Query: 227 CLNADDCGVAP*NCLWGRMFFHSL 156
CL+A++C P N W +FF L
Sbjct: 210 CLHAENCAAVPRNYFWAIIFFDFL 281
Score = 29.9 bits (59), Expect(3) = 4e-027
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2 / -2
Query: 161 NGRTYVPTNSFMGQHHNRLHLS 226
N R P NSF GQ HN LH S
Sbjct: 276 NQRK*WPRNSFSGQRHNFLHAS 211
Score = 25.4 bits (49), Expect(3) = 7e-036
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2 / +3
Query: 149 VCILIHLRIEC*SNINLPLP 90
VC+ RI *SNINL LP
Sbjct: 291 VCLSDPCRIAS*SNINLSLP 350
Score = 24.9 bits (48), Expect(3) = 1e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1 / +2
Query: 126 DRVLVQHQPTIA 91
DRV+V+HQP IA
Sbjct: 314 DRVVVKHQPIIA 349
Score = 24.0 bits (46), Expect(3) = 4e-027
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / -2
Query: 92 AMVG*CWTSTRS 127
AM+G*C T+TRS
Sbjct: 348 AMIG*CLTTTRS 313
>gb|CN816654.1|CN816654 HRO4523_C06_F11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_C06_F11, mRNA sequence
Length = 821
Score = 141 bits (303), Expect = 1e-034
Identities = 55/120 (45%), Positives = 75/120 (62%)
Frame = -1 / -2
Query: 654 SCSAGPAGEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNIN 475
S S P ++ W A I GP D+P+ GG F + + F DYP KPP V F +++FHPNI
Sbjct: 622 STSGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 443
Query: 474 SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATAR 295
++GSICLDIL+ QWSP ++ +L S+ SLL DPNP+ P E A MY ++ +Y R
Sbjct: 442 ADGSICLDILQNQWSPIYDVAAILTSVQSLLCDPNPNSPANSEAARMYSENKREYNRKVR 263
>gb|CN815849.1|CN815849 HRO4511_B08_D15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_B08_D15, mRNA sequence
Length = 620
Score = 138 bits (295), Expect = 2e-033
Identities = 52/107 (48%), Positives = 70/107 (65%)
Frame = -1 / +3
Query: 615 WQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILKEQ 436
W A I GP D+P+ GG F + + F DYP KPP V F +++FHPNI ++GSICLDIL+ Q
Sbjct: 12 WNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ 191
Query: 435 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATAR 295
WSP ++ +L S+ SLL DPNP+ P E A MY ++ +Y R
Sbjct: 192 WSPIYDVAAILTSVQSLLCDPNPNSPANSEAARMYSENKREYNRKVR 332
>gb|CN820944.1|CN820944 HRO4421_G05_M09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_G05_M09, mRNA
sequence
Length = 745
Score = 133 bits (284), Expect = 5e-032
Identities = 51/107 (47%), Positives = 69/107 (64%)
Frame = -1 / +1
Query: 615 WQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILKEQ 436
W A I GP D+P+ GG F + + F DYP KPP V F +++FH NI ++GSICLDIL+ Q
Sbjct: 7 WNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHSNIYADGSICLDILQNQ 186
Query: 435 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATAR 295
WSP ++ +L SI SLL DPNP+ P E A M+ ++ +Y R
Sbjct: 187 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRKVR 327
>gb|CN815167.1|CN815167 HRO4506_F04_K08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F04_K08, mRNA sequence
Length = 552
Score = 121 bits (258), Expect = 2e-028
Identities = 46/98 (46%), Positives = 65/98 (66%)
Frame = -1 / +2
Query: 588 DSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTISK 409
D+P+ GG F + + F DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP ++
Sbjct: 23 DTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAA 202
Query: 408 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATAR 295
+L SI SLL DPNP+ P E A ++ ++ +Y R
Sbjct: 203 ILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRKVR 316
>gb|CN821493.1|CN821493 HRO4425_H11_O21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_H11_O21, mRNA
sequence
Length = 443
Score = 119 bits (255), Expect = 5e-028
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = -1 / +1
Query: 417 ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATARSWTQKYAMG* 265
+SKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE+TARSWTQKYAMG*
Sbjct: 22 LSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG* 174
>gb|CN820524.1|CN820524 HRO4413_D03_G05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D03_G05, mRNA
sequence
Length = 393
Score = 109 bits (232), Expect(2) = 4e-027
Identities = 47/65 (72%), Positives = 48/65 (73%)
Frame = -1 / +1
Query: 396 ICSLLTDPNPDDPLVPEIAHMYKTDRPKYEATARSWTQKYAMG*K*NEVETPYSALLLKC 217
ICSLLTDPNPDDPLVPEIAHMYKTDR KYE TARSWTQKYAMG* P A + K
Sbjct: 16 ICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG*SDAPCLYPLLACMQKI 195
Query: 216 RRLWC 202
L C
Sbjct: 196 LSLSC 210
Score = 72.1 bits (151), Expect(3) = 4e-021
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = -3 / +3
Query: 400 FYLLPAY*SQPRRSSCP*DCSHVQDGSA*VRGNSPQLDPEICHGM 266
F+LL AY QP R SCP*D +VQDGS VR +SPQLD E+CHGM
Sbjct: 12 FHLLAAYRPQPGRPSCP*DRPYVQDGSVKVRDDSPQLDAEVCHGM 146
Score = 35.0 bits (70), Expect(3) = 4e-021
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1 / +2
Query: 228 LLKCRRLWCCPMKLFVGTYVLPF 160
LL CRR CP+KLF+G Y L F
Sbjct: 176 LLACRRFCRCPVKLFLGHYFL*F 244
Score = 27.2 bits (53), Expect(2) = 4e-027
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +3
Query: 162 FLVARMHSDPSKDRVLVQHQPTI 94
FLV R+ DRV+V+HQP I
Sbjct: 243 FLVGRVSLRSM*DRVVVKHQPII 311
Score = 26.3 bits (51), Expect(3) = 4e-021
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2 / +1
Query: 161 SLSPVCILIHLRIEC*SNINLPL 93
SLS VC+ RI *SNINL L
Sbjct: 244 SLSVVCLSDPCRIVS*SNINLSL 312
>gb|CN817131.1|CN817131 HRO4528_E12_J24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_E12_J24, mRNA sequence
Length = 726
Score = 71.2 bits (149), Expect(2) = 5e-023
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = -1 / +2
Query: 627 DMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNIN 475
++F W A I GP ++P+ GGVF + P YP PP+V F TK+FHPN++
Sbjct: 110 NIFKWTALIKGPSETPFEGGVFQLAFSIPEQYPLLPPQVRFLTKIFHPNVH 262
Score = 51.5 bits (106), Expect(2) = 5e-023
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = -1 / +2
Query: 468 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 355
G ICLDILK WSPA T+ V +I +L+ P D PL
Sbjct: 272 GEICLDILKNAWSPAWTLQSVCRAIIALMAHPEADSPL 385
>gb|CN816956.1|CN816956 HRO4526_F10_K20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_F10_K20, mRNA sequence
Length = 577
Score = 102 bits (218), Expect = 7e-023
Identities = 40/80 (50%), Positives = 54/80 (67%)
Frame = -1 / +3
Query: 534 YPFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 355
YP KPP V F +++FHPNI ++GSICLDIL+ QWSP ++ +L SI SLL DPNP+ P
Sbjct: 12 YPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPA 191
Query: 354 VPEIAHMYKTDRPKYEATAR 295
E A M+ ++ +Y R
Sbjct: 192 NSEAARMFSENKREYNRKVR 251
>gb|CN818122.1|CN818122 HRO4471_F01_K01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_F01_K01, mRNA sequence
Length = 650
Score = 100 bits (212), Expect = 4e-022
Identities = 42/118 (35%), Positives = 63/118 (53%)
Frame = -1 / +2
Query: 663 PPTSCSAGPAGEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHP 484
P T+ + P G+D + P + Y GG F YP + PKV KTKV+HP
Sbjct: 296 PKTTKISFPNGKDDLMNFEATLRPDEGYYLGGAFTFTFQVSASYPHEAPKVKCKTKVYHP 475
Query: 483 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKY 310
NI+ G++CL+IL+E W P L I+ ++ + L + PN +DPL E A + + K+
Sbjct: 476 NIDLEGNVCLNILREDWKPVLNINTIIYGLNLLFSQPNDEDPLNHEAAAVLRDYPQKF 649
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,026,290
Number of Sequences: 8143
Number of extensions: 176608
Number of successful extensions: 1529
Number of sequences better than 1.0e-020: 22
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 288509106
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)