TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1366945.2.1
(1191 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820999.1|CN820999 HRO4422_D06_G12ZS5 Lib AA069E1X Aven... 103 5e-024
>gb|CN820999.1|CN820999 HRO4422_D06_G12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D06_G12, mRNA
sequence
Length = 324
Score = 103 bits (219), Expect(2) = 5e-024
Identities = 38/45 (84%), Positives = 40/45 (88%)
Frame = +1 / +1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR* 336
WWNQ+LSDMSYR MRWVQRKFMIYNYC D KR +GVPAECKLR*
Sbjct: 52 WWNQELSDMSYRHMRWVQRKFMIYNYCTDPKRVAEGVPAECKLR* 186
Score = 24.9 bits (48), Expect(2) = 5e-024
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2 / +3
Query: 485 SCKCSSSRVAFFDL 526
SC C+S +AFF L
Sbjct: 222 SCSCTSMHIAFFHL 263
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,112,073
Number of Sequences: 8143
Number of extensions: 139495
Number of successful extensions: 838
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 425636640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)