TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131572.2.3
(1521 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Aven... 84 8e-045
gb|CN816101.1|CN816101 HRO4517_A05_A09ZS5 Lib AA071E1X Aven... 86 6e-043
gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Aven... 84 3e-037
gb|CN821053.1|CN821053 HRO4427_A04_B07ZS5 Lib AA069E1X Aven... 85 7e-035
gb|CN815850.1|CN815850 HRO4511_B09_D17ZS5 Lib AA071E1X Aven... 84 2e-033
gb|CN814955.1|CN814955 HRO4504_C09_F18ZS5 Lib AA071E1X Aven... 100 8e-031
gb|CN814789.1|CN814789 HRO4502_E05_I10ZS5 Lib AA071E1X Aven... 85 1e-029
gb|CN816425.1|CN816425 HRO4520_F02_L04ZS5 Lib AA071E1X Aven... 85 4e-029
gb|CN820644.1|CN820644 HRO4415_G07_N13ZS5 Lib AA069E1X Aven... 99 9e-026
gb|CN814894.1|CN814894 HRO4503_F08_L15ZS5 Lib AA071E1X Aven... 102 1e-022
gb|CN816150.1|CN816150 HRO4517_E08_I15ZS5 Lib AA071E1X Aven... 102 1e-022
gb|CN816381.1|CN816381 HRO4520_A12_B24ZS5 Lib AA071E1X Aven... 102 1e-022
>gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_B06_C11, mRNA sequence
Length = 629
Score = 84.5 bits (178), Expect(3) = 8e-045
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -1 / +1
Query: 513 MLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEFGARVAFEVY 355
M E +LMD+ M+ T+GRQRDE +W +LF KAGFS+YK++K+ GAR FEVY
Sbjct: 322 MFEAQILMDMAMLVNTRGRQRDENDWRQLFMKAGFSDYKVVKKLGARGVFEVY 480
Score = 79.0 bits (166), Expect(3) = 8e-045
Identities = 31/72 (43%), Positives = 46/72 (63%)
Frame = -1 / +1
Query: 735 IATKPADGAMINYVEGDMFSFIPPAQTXXXXXXXXXLTDEECVKLLAQCRKAIPSRKDGG 556
+ K ++NYV GD+F +P +Q +D++CVK+L+QCR AIPSR++GG
Sbjct: 94 VIEKVPSDGIVNYVAGDLFHSVPKSQAVLLKLVLHHWSDDDCVKILSQCRSAIPSREEGG 273
Query: 555 KVIIGDIMIDHS 520
KVII DI++ S
Sbjct: 274 KVIIIDILVGPS 309
Score = 67.0 bits (140), Expect(3) = 3e-031
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +1 / -3
Query: 340 GAISRIDFEGNTSSKFLQDLVFAEPCFGEELAPFFFISLPSFCHGHHADVHQEVSFQH 513
G S +DFE + S FL + + EPCF EEL P FI+L + C H VHQ +SF+H
Sbjct: 495 GNPSLVDFEDTSCS*FLDNFIVTEPCFHEELTPVIFITLTASCVHKHGHVHQNLSFKH 322
Score = 57.0 bits (118), Expect(3) = 3e-031
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +1 / -3
Query: 529 NHNITDYNFPAILP*RNRLPALSQELDALLIGQVVQHKL*HDSLSRWNETEHVTFDIV 702
N NI D + P++L *RN P L Q+L ++I VVQHKL L W+ E +T +IV
Sbjct: 300 NQNIYDDHLPSLLT*RNGTPTLRQDLHTVVITPVVQHKLEQHRLRLWDGVEQITSNIV 127
Score = 51.5 bits (106), Expect(3) = 8e-045
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = -1 / +1
Query: 813 GDDKGARAIVKAFPHIKCTVLAPPKIIATKPADG 712
GD ARAI KA PHIKCTVL PK+I P+DG
Sbjct: 19 GD*TTARAITKAHPHIKCTVLDLPKVIEKVPSDG 120
Score = 45.1 bits (92), Expect(3) = 3e-031
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2 / -1
Query: 713 PSAGLVAMILGGASTVHFMCGKALTMALAPLSSP 814
PS G ++ G +STVH MCG AL MALA + SP
Sbjct: 119 PSDGTFSITFGRSSTVHLMCGWALVMALAVVQSP 18
>gb|CN816101.1|CN816101 HRO4517_A05_A09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A05_A09, mRNA sequence
Length = 652
Score = 86.3 bits (182), Expect(3) = 6e-043
Identities = 34/63 (53%), Positives = 47/63 (74%)
Frame = -1 / +3
Query: 708 MINYVEGDMFSFIPPAQTXXXXXXXXXLTDEECVKLLAQCRKAIPSRKDGGKVIIGDIMI 529
+INYV GD+F +PP+Q +DE+CVK+LAQCRKAIPSR++GGKVII +I++
Sbjct: 87 VINYVAGDLFHTVPPSQAVMLKLVLHFWSDEDCVKILAQCRKAIPSREEGGKVIIIEIVV 266
Query: 528 DHS 520
+ S
Sbjct: 267 EPS 275
Score = 83.5 bits (176), Expect(3) = 6e-043
Identities = 34/56 (60%), Positives = 41/56 (73%)
Frame = -1 / +3
Query: 513 MLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEFGARVAFEVYP*D 346
M E LL D+ MM T+G QRDEK W ELF +AGF++YKI+K+ GAR EVYP*D
Sbjct: 288 MFEAQLLFDMLMMVNTRGGQRDEKHWRELFMQAGFTDYKIVKKLGARSVIEVYP*D 455
Score = 56.1 bits (116), Expect(3) = 3e-021
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +1 / -3
Query: 529 NHNITDYNFPAILP*RNRLPALSQELDALLIGQVVQHKL*HDSLSRWNETEHVTFDIV 702
+H+ DY P++L *RN LPAL + +LI V+HKL H SL N E VT +IV
Sbjct: 266 DHDFYDYYLPSLLA*RNGLPALG*DFHTILIAPKVKHKLEHHSLRWGNGVEEVTGNIV 93
Score = 51.0 bits (105), Expect(3) = 3e-021
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = +2 / -1
Query: 347 SHG*TSKATRAPNSFRILYSLNPALVKSSLHSFSSLCRPFVMVIMPMSIR 496
S+G*TS RAP+ F IL S+NPA + SS FSS P V IM +S R
Sbjct: 454 SYG*TSMTDRAPSFFTIL*SVNPACINSSRQCFSSR*PPLVFTIMSISKR 305
Score = 38.6 bits (78), Expect(3) = 6e-043
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -1 / +3
Query: 786 VKAFPHIKCTVLAPPKIIATKP 721
VKA+PH+KCTVL PK+I P
Sbjct: 12 VKAYPHLKCTVLDLPKVIEKAP 77
Score = 27.6 bits (54), Expect(3) = 3e-021
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2 / -1
Query: 722 GLVAMILGGASTVHFMCGKALT 787
G ++ G +STVH CG ALT
Sbjct: 76 GAFSITFGRSSTVHLRCG*ALT 11
>gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_G05_M09, mRNA sequence
Length = 662
Score = 84.5 bits (178), Expect(3) = 3e-037
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -1 / +2
Query: 513 MLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEFGARVAFEVY 355
M E +LMD+ M+ T+GRQRDE +W +LF KAGFS+YK++K+ GAR FEVY
Sbjct: 269 MFEAQILMDMAMLVNTRGRQRDENDWRQLFMKAGFSDYKVVKKLGARGVFEVY 427
Score = 79.0 bits (166), Expect(3) = 3e-037
Identities = 31/72 (43%), Positives = 46/72 (63%)
Frame = -1 / +2
Query: 735 IATKPADGAMINYVEGDMFSFIPPAQTXXXXXXXXXLTDEECVKLLAQCRKAIPSRKDGG 556
+ K ++NYV GD+F +P +Q +D++CVK+L+QCR AIPSR++GG
Sbjct: 41 VIEKVPSDGIVNYVAGDLFHSVPKSQAVLLKLVLHHWSDDDCVKILSQCRSAIPSREEGG 220
Query: 555 KVIIGDIMIDHS 520
KVII DI++ S
Sbjct: 221 KVIIIDILVGPS 256
Score = 67.0 bits (140), Expect(3) = 1e-025
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +1 / -2
Query: 340 GAISRIDFEGNTSSKFLQDLVFAEPCFGEELAPFFFISLPSFCHGHHADVHQEVSFQH 513
G S +DFE + S FL + + EPCF EEL P FI+L + C H VHQ +SF+H
Sbjct: 442 GNPSLVDFEDTSCS*FLDNFIVTEPCFHEELTPVIFITLTASCVHKHGHVHQNLSFKH 269
Score = 57.0 bits (118), Expect(3) = 1e-025
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +1 / -2
Query: 529 NHNITDYNFPAILP*RNRLPALSQELDALLIGQVVQHKL*HDSLSRWNETEHVTFDIV 702
N NI D + P++L *RN P L Q+L ++I VVQHKL L W+ E +T +IV
Sbjct: 247 NQNIYDDHLPSLLT*RNGTPTLRQDLHTVVITPVVQHKLEQHRLRLWDGVEQITSNIV 74
Score = 25.8 bits (50), Expect(3) = 1e-025
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / -2
Query: 740 LGGASTVHFMCG 775
LG +STVH MCG
Sbjct: 40 LGRSSTVHLMCG 5
Score = 25.8 bits (50), Expect(3) = 3e-037
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 774 PHIKCTVLAPPK 739
PHIKCTVL P+
Sbjct: 6 PHIKCTVLDLPR 41
>gb|CN821053.1|CN821053 HRO4427_A04_B07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_A04_B07, mRNA
sequence
Length = 644
Score = 84.9 bits (179), Expect(2) = 7e-035
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = -1 / +3
Query: 513 MLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEFGARVAFEVY 355
M E +LMD+ M+ T+GRQRDE +W +LF KAGFS+YKI+K+ GAR FEVY
Sbjct: 237 MFEAQILMDMAMLVNTRGRQRDENDWRQLFMKAGFSDYKIVKKLGARGVFEVY 395
Score = 78.5 bits (165), Expect(2) = 7e-035
Identities = 32/69 (46%), Positives = 44/69 (63%)
Frame = -1 / +3
Query: 726 KPADGAMINYVEGDMFSFIPPAQTXXXXXXXXXLTDEECVKLLAQCRKAIPSRKDGGKVI 547
K ++NYV GD+F +P +Q +DE+CVK+L+QCR AIPSR+ GGKVI
Sbjct: 18 KVPSDGIVNYVAGDLFHSVPKSQAVLLKLVLHHWSDEDCVKILSQCRNAIPSREKGGKVI 197
Query: 546 IGDIMIDHS 520
I DI++ S
Sbjct: 198 IIDILVGPS 224
Score = 67.5 bits (141), Expect(2) = 7e-024
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +1 / -1
Query: 340 GAISRIDFEGNTSSKFLQDLVFAEPCFGEELAPFFFISLPSFCHGHHADVHQEVSFQH 513
G S +DFE + S FL + + EPCF EEL P FI+L + C H VHQ +SF+H
Sbjct: 410 GIPSLVDFEDTSCS*FLDNFIVTEPCFHEELTPVIFITLTASCVHKHGHVHQNLSFKH 237
Score = 58.8 bits (122), Expect(2) = 7e-024
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +2 / -2
Query: 569 REGIAFRH*ARSLTHSSSVRWCSTSFSTTV*AGGMKLNMSPST*FII 709
REGIAF H* + T SSS++WCSTS S T * G + N SP+T* I
Sbjct: 175 REGIAFLH*DKIFTQSSSLQWCSTSLSNTA*DFGTEWNKSPAT*LTI 35
>gb|CN815850.1|CN815850 HRO4511_B09_D17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_B09_D17, mRNA sequence
Length = 621
Score = 84.0 bits (177), Expect(2) = 2e-033
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = -1 / +2
Query: 513 MLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEFGARVAFEVY 355
M E +LMD+ M+ T+GRQRDE +W +LF KAGFS+YKI+K+ GAR FEVY
Sbjct: 215 MFEAQVLMDMAMLVNTRGRQRDENDWRQLFMKAGFSDYKIVKKVGARGVFEVY 373
Score = 74.4 bits (156), Expect(2) = 2e-033
Identities = 29/63 (46%), Positives = 43/63 (68%)
Frame = -1 / +2
Query: 708 MINYVEGDMFSFIPPAQTXXXXXXXXXLTDEECVKLLAQCRKAIPSRKDGGKVIIGDIMI 529
++ YV GD+F +P +Q +DE+CVK+L+QC+ AIPSR++GGKVII DI++
Sbjct: 14 IVYYVAGDLFHSVPKSQAVMLKLVLHRWSDEDCVKILSQCKSAIPSREEGGKVIIIDILV 193
Query: 528 DHS 520
S
Sbjct: 194 GPS 202
Score = 66.6 bits (139), Expect(2) = 6e-023
Identities = 26/58 (44%), Positives = 34/58 (58%)
Frame = +1 / -3
Query: 340 GAISRIDFEGNTSSKFLQDLVFAEPCFGEELAPFFFISLPSFCHGHHADVHQEVSFQH 513
G S +DFE + S FL + + EPCF EEL P FI+L + C H VHQ + F+H
Sbjct: 388 GNPSLVDFEDTSCSYFLDNFIVTEPCFHEELTPVIFITLTASCVDKHGHVHQNLGFKH 215
Score = 56.5 bits (117), Expect(2) = 6e-023
Identities = 26/58 (44%), Positives = 34/58 (58%)
Frame = +1 / -3
Query: 529 NHNITDYNFPAILP*RNRLPALSQELDALLIGQVVQHKL*HDSLSRWNETEHVTFDIV 702
N NI D + P++L *RN L Q+L +LI VQHKL H L W+ E VT ++V
Sbjct: 193 NQNIYDDHLPSLLT*RNGTLTLRQDLHTILITPAVQHKLEHHGLRLWDGVEQVTSNVV 20
>gb|CN814955.1|CN814955 HRO4504_C09_F18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_C09_F18, mRNA sequence
Length = 648
Score = 100 bits (212), Expect(2) = 8e-031
Identities = 40/72 (55%), Positives = 50/72 (69%)
Frame = -1 / +1
Query: 561 GGKVIIGDIMIDHSGPMLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEF 382
G ++I ++ SGP E LLMD+ MM T GRQRDE +W ++FTKAGFS Y I+K+
Sbjct: 163 GKVIVIDIVVDSSSGPTHEAELLMDVAMMVFTNGRQRDESDWGDIFTKAGFSGYNIVKKL 342
Query: 381 GARVAFEVYP*D 346
GAR FEVYP*D
Sbjct: 343 GARGVFEVYP*D 378
Score = 91.8 bits (194), Expect(3) = 7e-024
Identities = 34/63 (53%), Positives = 47/63 (74%)
Frame = -1 / +1
Query: 708 MINYVEGDMFSFIPPAQTXXXXXXXXXLTDEECVKLLAQCRKAIPSRKDGGKVIIGDIMI 529
++NYV GDMF +PPAQ +DE+CVK+LAQC+KA+PSR++GGKVI+ DI++
Sbjct: 13 VVNYVAGDMFKLVPPAQAVLVKLVLHHWSDEDCVKILAQCKKAVPSREEGGKVIVIDIVV 192
Query: 528 DHS 520
D S
Sbjct: 193 DSS 201
Score = 66.1 bits (138), Expect(2) = 1e-024
Identities = 28/44 (63%), Positives = 33/44 (75%)
Frame = +2 / -2
Query: 569 REGIAFRH*ARSLTHSSSVRWCSTSFSTTV*AGGMKLNMSPST* 700
R+G AF H*AR T SSS++WC TS + T *AGG LNMSP+T*
Sbjct: 152 RDGTAFLH*ARIFTQSSSLQWCRTSLTNTA*AGGTSLNMSPAT* 21
Score = 62.9 bits (131), Expect(2) = 1e-024
Identities = 31/50 (62%), Positives = 33/50 (66%)
Frame = +2 / -2
Query: 347 SHG*TSKATRAPNSFRILYSLNPALVKSSLHSFSSLCRPFVMVIMPMSIR 496
SHG TSK RAP+ F +L LNPALVK S S SS CRP V IM SIR
Sbjct: 377 SHGYTSKTPRAPSFFTML*PLNPALVKMSPQSDSSRCRPLVNTIMATSIR 228
Score = 49.6 bits (102), Expect(2) = 8e-031
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = -3 / +3
Query: 703 KLCRR*HVQFHSTCSNCRAKACAAPPDR*GVRQAPGSMPEGDSFTEGWRES 551
+L RR HVQ S+C +AC+AP + G+R+ P S+ EG S G RES
Sbjct: 18 QLRRRRHVQARPASSSCVGQACSAPLE*RGLREDPSSVQEGRSVARGGRES 170
Score = 29.5 bits (58), Expect(3) = 7e-024
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2 / +2
Query: 437 GASSSPKQGSANTRS*RNLELVLPSKSIREIAP 339
GA+ SPKQ *RN ELV+ + I E +P
Sbjct: 287 GATFSPKQDLVAITL*RNWELVVSLRYIHETSP 385
Score = 22.6 bits (43), Expect(3) = 7e-024
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3 / +3
Query: 496 PDGHRHDDHDKRTAER*KRMERALHQSRV 410
PDG HD + R + R HQSR+
Sbjct: 228 PDGCSHDGVHQWPTARRV*LGRHFHQSRI 314
>gb|CN814789.1|CN814789 HRO4502_E05_I10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_E05_I10, mRNA sequence
Length = 596
Score = 84.9 bits (179), Expect(2) = 1e-029
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = -1 / -3
Query: 513 MLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEFGARVAFEVY 355
M E +LMD+ M+ T+GRQRDE +W +LF KAGFS+YKI+K+ GAR FEVY
Sbjct: 423 MFEAQILMDMAMLVNTRGRQRDENDWRQLFMKAGFSDYKIVKKLGARGVFEVY 265
Score = 61.1 bits (127), Expect(2) = 1e-029
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = -1 / -3
Query: 672 IPPAQTXXXXXXXXXLTDEECVKLLAQCRKAIPSRKDGGKVIIGDIMIDHS 520
+P +Q +DE+CVK+L+QCR AIPSR+ GGKVII DI++ S
Sbjct: 588 VPKSQAVLLKLVLHHWSDEDCVKILSQCRNAIPSREKGGKVIIIDILVGPS 436
>gb|CN816425.1|CN816425 HRO4520_F02_L04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_F02_L04, mRNA sequence
Length = 538
Score = 84.9 bits (179), Expect(2) = 4e-029
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = -1 / +1
Query: 513 MLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEFGARVAFEVY 355
M E +LMD+ M+ T+GRQRDE +W +LF KAGFS+YKI+K+ GAR FEVY
Sbjct: 133 MFEAQILMDMAMLVNTRGRQRDENDWRQLFMKAGFSDYKIVKKLGARGVFEVY 291
Score = 59.3 bits (123), Expect(2) = 4e-029
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = -1 / +1
Query: 624 TDEECVKLLAQCRKAIPSRKDGGKVIIGDIMIDHS 520
+DE+CVK+L+QCR AIPSR+ GGKVII DI++ S
Sbjct: 16 SDEDCVKILSQCRNAIPSREKGGKVIIIDILVGPS 120
>gb|CN820644.1|CN820644 HRO4415_G07_N13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_G07_N13, mRNA
sequence
Length = 614
Score = 98.7 bits (209), Expect(2) = 9e-026
Identities = 39/72 (54%), Positives = 52/72 (72%)
Frame = -1 / +2
Query: 561 GGKVIIGDIMIDHSGPMLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEF 382
G ++I ++ SGP E LL+D+ MM +T GRQRDE +W+E+FTKAGF+ Y I+K+
Sbjct: 101 GKVIVIDILVDPSSGPTHEAELLVDVAMMVLTNGRQRDESDWAEIFTKAGFTGYNIVKKL 280
Query: 381 GARVAFEVYP*D 346
GAR FEVYP*D
Sbjct: 281 GARGVFEVYP*D 316
Score = 34.1 bits (68), Expect(2) = 9e-026
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3 / +1
Query: 646 KACAAPPDR*GVRQAPGSMPEGDSFTEGWRES 551
+AC AP + G+R+ PGS+ EG S RES
Sbjct: 13 QACVAPLE*RGLREDPGSVQEGHSVARRGRES 108
>gb|CN814894.1|CN814894 HRO4503_F08_L15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_F08_L15, mRNA sequence
Length = 567
Score = 102 bits (218), Expect = 1e-022
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = -1 / +3
Query: 522 SGPMLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEFGARVAFEVYP* 349
SGPMLET LLMD+ M+T T+GRQRDE +WS +FTKAGFS+YKI+K GAR EVYP*
Sbjct: 39 SGPMLETQLLMDVLMLTCTRGRQRDENDWSSIFTKAGFSDYKIIKMLGARGVIEVYP* 212
>gb|CN816150.1|CN816150 HRO4517_E08_I15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E08_I15, mRNA sequence
Length = 455
Score = 102 bits (218), Expect = 1e-022
Identities = 40/58 (68%), Positives = 49/58 (84%)
Frame = -1 / +1
Query: 522 SGPMLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEFGARVAFEVYP* 349
SGPMLET LLMD+ M+T T+GRQRDE +WS +FTKAGF++YKI+K+ GAR EVYP*
Sbjct: 25 SGPMLETQLLMDVLMLTCTRGRQRDENDWSSIFTKAGFNDYKIIKKLGARGVIEVYP* 198
>gb|CN816381.1|CN816381 HRO4520_A12_B24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_A12_B24, mRNA sequence
Length = 696
Score = 102 bits (218), Expect = 1e-022
Identities = 40/72 (55%), Positives = 52/72 (72%)
Frame = -1 / -1
Query: 561 GGKVIIGDIMIDHSGPMLETHLLMDIGMMTMTKGRQRDEKEWSELFTKAGFSEYKILKEF 382
G ++I ++ SGP E LLMD+GMM +T GRQRDE +W E+FTKAGF+ Y ++K+
Sbjct: 435 GKVIVIDIVVDSSSGPTHEAELLMDVGMMVLTNGRQRDESDWGEIFTKAGFTGYNLVKKL 256
Query: 381 GARVAFEVYP*D 346
GAR FEVYP*D
Sbjct: 255 GARGVFEVYP*D 220
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 18,007,257
Number of Sequences: 8143
Number of extensions: 297506
Number of successful extensions: 3035
Number of sequences better than 1.0e-020: 13
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 553684972
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)