TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.1
(1236 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Aven... 210 e-105
gb|CN819665.1|CN819665 HRO4402_G05_M10ZS5 Lib AA069E1X Aven... 195 8e-068
gb|CN818757.1|CN818757 HRO4468_C07_E14ZS5 Lib AA070E1X Aven... 119 6e-055
gb|CN819392.1|CN819392 HRO4405_E01_I01ZS5 Lib AA069E1X Aven... 82 2e-035
>gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D02_G03, mRNA
sequence
Length = 704
Score = 210 bits (453), Expect(2) = e-105
Identities = 85/114 (74%), Positives = 98/114 (85%)
Frame = +2 / +3
Query: 350 VIAPAVTGTTNVLKACYEAKVRRVVVVSSCGAVYANPIYPKGKVFDEDCWSDEDYCRKKE 529
+IAPAVTGT N LKACYEAKV+RVVVVSS AVY NP +PKGKV DED WSDED CRK +
Sbjct: 36 IIAPAVTGTLNELKACYEAKVKRVVVVSSVSAVYNNPNWPKGKVLDEDNWSDEDLCRKNK 215
Query: 530 DWYLVSKTLSEREALAFAAKTGLDVVTVCPSLVFGPLMQPTVNLSSEMILKYFK 691
DWY +SKTL+EREA A+AAKTGLD+VT+CPSLV GPL+Q TVN SS+++L YFK
Sbjct: 216 DWYDLSKTLAEREAFAYAAKTGLDIVTICPSLVIGPLLQSTVNTSSKVLLSYFK 377
Score = 188 bits (405), Expect(2) = e-105
Identities = 76/105 (72%), Positives = 91/105 (86%)
Frame = +2 / +3
Query: 698 ETVENVLSNMVDIRDVADALLLTYEKPEASGRYICSSHAIKISDMINILKTMYPSYPYPK 877
ETVEN N+VD+RDVADA+LL YE EASGRYICSS IK SD+I+ILKT+YP+YPYPK
Sbjct: 387 ETVENKYRNLVDVRDVADAILLAYENAEASGRYICSSSPIKASDLISILKTLYPTYPYPK 566
Query: 878 NFVEDDVNSVYSSEKLQKLGWTFKPIEESLRDTVESYKAFGILN* 1012
NF E + ++ YSSEKLQKLGWTF+PIEE+LRD+VESY+A G+LN*
Sbjct: 567 NFAEVEHSTTYSSEKLQKLGWTFRPIEETLRDSVESYRASGVLN* 701
Score = 145 bits (311), Expect(2) = 9e-070
Identities = 73/118 (61%), Positives = 76/118 (64%)
Frame = -1 / -2
Query: 690 LKYLRIISLLKFTVGCIKGPNTNDGQTVTTSSPVFAAKARASRSDSVLETKYXXXXXXXX 511
LK LR LL FTV C KGP TNDGQ VT SSPVFAA A+ASRS SVLE Y
Sbjct: 376 LK*LRRTLLLVFTVDCSKGPITNDGQIVTISSPVFAA*AKASRSASVLERSYQSLFFLQR 197
Query: 510 XXXXXXXXSNTLPFG*IGLAYTAPHEDTTTTRLTFAS*QAFNTLVVPVTAGAMTSTSG 337
S TLP G +GL YTA EDTTTTRLTFAS*QAFN+ VPVTAGAM G
Sbjct: 196 SSSDQLSSSKTLPLGQLGLLYTAETEDTTTTRLTFAS*QAFNSFSVPVTAGAMILPQG 23
Score = 134 bits (287), Expect(2) = 9e-070
Identities = 61/106 (57%), Positives = 73/106 (68%)
Frame = -3 / -1
Query: 1015 CSIQDAKCLVGFNSVTEGFLYRLEGPPQLLQFLRAVYRVDIIFHKIFGIRVRRIHGLQYV 836
CS+QDA+C VG ++V EGFLY EGPPQ L+FLR V F K+FGIRVR I GLQY
Sbjct: 704 CSVQDARCSVGLDAVPEGFLYGPEGPPQFLKFLRTVSGTVFHFCKVFGIRVRWI*GLQYA 525
Query: 835 YHIRNFYCM*TADVSSRRFWLFVSQKKSISNITNIHHITEYIFNSL 698
Y IR F TA V+SRR +F+ QK SI NI+NIH + +IF SL
Sbjct: 524 YQIRGFNW*RTAYVASRRLCIFICQKNSIGNISNIH*VPVFIFYSL 387
Score = 116 bits (249), Expect(2) = 8e-052
Identities = 63/114 (55%), Positives = 73/114 (64%)
Frame = +1 / +2
Query: 352 HSSRCNRYNQCVKGLL*GKS*ASCGGVFMWSCVC*SYLSEG*GV**RLLVR*GLLQEEGG 531
HSS NR+ + V+GLL GKS*ASC GVF + CV *S L+ G + *R LVR G LQ+E G
Sbjct: 38 HSSCRNRHTE*VEGLLRGKS*ASCRGVFCFCCVQ*S*LA*GQSLG*RQLVRRGPLQKE*G 217
Query: 532 LVFSFQNTVGTRSSCFCSKNRAGRCNCLSVISIWTLDAAYSKFEQRNDP*IFQR 693
LV FQN C CSKN G CN L +IS W L A YSK EQ + P*+F R
Sbjct: 218 LV*PFQNACRA*GFCLCSKNWTGYCNYLPIISNWPLAAVYSKHEQ*SPP*LF*R 379
Score = 114 bits (244), Expect(3) = 9e-048
Identities = 63/114 (55%), Positives = 70/114 (61%)
Frame = -2 / -3
Query: 692 L*NI*GSFRCSNLL*AASRVQILMTDKQLQRPALFLLQKQELLVPTVFWKLNTNPPSSCS 513
L*N *G CS LL* A+R Q+LM K LQ P FLL KQ+ FWK +TNP S C
Sbjct: 378 L*NN*GGLYCSCLL*TAARGQLLMMGK*LQYPVQFLLHKQKPHALQAFWKGHTNPYSFCR 199
Query: 512 NPHLTSSLHQTPYPSDK*D*HTQLHMKTPPQLA*LLPHSKPLTHWLYLLQREL* 351
P LTS LH P *D TQ KTP QLA*LLP SKP TH + LL++EL*
Sbjct: 198 GPRLTSCLHPRLCP*AS*DYCTQQKQKTPRQLA*LLPRSKPSTHSVCLLRQEL* 37
Score = 105 bits (224), Expect(2) = 2e-046
Identities = 60/114 (52%), Positives = 67/114 (58%)
Frame = +3 / +1
Query: 351 S*LPL*QVQPMC*RLAMRQKLGELWWCLHVELCMLILFIRRVRCLMKTAGQMRITAXXXX 530
S*L *Q M *RLA RQKL EL WCL LC +IL R + MKT GQ R +A
Sbjct: 37 S*LLP*QAH*MS*RLATRQKLSELSWCLLFLLCTIILTGLRAKSWMKTTGQTRTSAERIR 216
Query: 531 XXXXFPKHCRNEKLLLLQQKQGWTL*LFVRH*YLDP*CSLQ*I*AAK*SLNISK 692
FPK ++ +LLL+QQK W L*LF H* L P CSLQ* A K SL I K
Sbjct: 217 IGMTFPKRLQSVRLLLMQQKLDWIL*LFAHH**LAPCCSLQ*TRAVKSSLVILK 378
Score = 102 bits (218), Expect(2) = 8e-052
Identities = 45/81 (55%), Positives = 55/81 (67%)
Frame = +1 / +2
Query: 772 KARSVWTIHLQFTCNKNF*YDKHTEDHVSVLPLSQKFCGR*CQLCIQL*ETAEAGVDLQA 951
K R VWT+H+QF N + * DKHTED +S +PLSQK C Q +Q *ET+E GVDLQA
Sbjct: 461 KCRGVWTLHMQFFTN*SL*SDKHTEDLISNVPLSQKLCRSGTQYHLQF*ETSETGVDLQA 640
Query: 952 YRGIPP*HC*ILQGIWHPELN 1014
+RG P +LQ IW PEL+
Sbjct: 641 HRGNPQGQRRVLQSIWRPELS 703
Score = 96.4 bits (204), Expect(2) = 2e-046
Identities = 54/106 (50%), Positives = 63/106 (59%)
Frame = +3 / +1
Query: 696 SRLLKMYSVIWWIFVXXXXXXXXXTKSQKRLDDTSAVHMQ*KFLI**TY*RPCIRLTLIP 875
+RL K+ + W+F K Q+RLD T AV Q K LI** Y*RP I+ TLIP
Sbjct: 385 TRL*KINTGT*WMFEMLPMLFFWHMKMQRRLDATYAVLHQLKPLI**AY*RPYIQRTLIP 564
Query: 876 KILWKMMSTLYTALRNCRSWGGPSSL*RNPSVTLLNPTRHLAS*IE 1013
K L K + T LRN R+WGGPS *R PS T +PT HLAS* E
Sbjct: 565 KTLQKWNTVPLTVLRNFRNWGGPSGP*RKPSGTASSPTEHLAS*TE 702
Score = 68.4 bits (143), Expect(4) = 2e-034
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = -3 / -1
Query: 691 FEIFKDHFAAQIYCRLHQGSKY**RTNSYNVQPCFCCKSKSFSFRQCFG 545
F+I K+ F A++YCRL QG+ Y** NSYN+Q FCC SKS + + FG
Sbjct: 377 FKITKEDFTARVYCRLQQGANY**WANSYNIQSSFCCISKSLTLCKRFG 231
Score = 58.8 bits (122), Expect(3) = 9e-048
Identities = 32/64 (50%), Positives = 32/64 (50%)
Frame = -1 / -2
Query: 882 KFLG*G*DGYMVFSMFIISEIFIACELQMYRPDASGFXXXXXXXXXXXXXXXILLSTFST 703
KFLG*G GY VFSM I SE I EL M RPDAS F L FST
Sbjct: 571 KFLG*GYVGYKVFSMLIRSEALIGEELHM*RPDASAFSYAKRIASATSRTSTRFLYLFST 392
Query: 702 VSRS 691
VS S
Sbjct: 391 VSCS 380
Score = 51.9 bits (107), Expect(4) = 2e-034
Identities = 24/40 (60%), Positives = 26/40 (65%)
Frame = -2 / -3
Query: 890 LPQNFWDKGKTDTWSSVCLSYQKFLLHVNCRCIVQTLLAF 771
L Q+FWDKG D SSVCLS Q+ L NC C VQT L F
Sbjct: 579 LLQSFWDKGTLDIRSSVCLSDQRL*LVKNCICSVQTPLHF 460
Score = 51.0 bits (105), Expect(3) = 9e-048
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -1 / -2
Query: 1011 QFRMPNAL*DSTVSRRDSSIGLKVHPSF 928
QFR P+AL*DST+S R SS+GLKVHPSF
Sbjct: 700 QFRTPDAL*DSTLSLRVSSMGLKVHPSF 617
Score = 47.8 bits (98), Expect(4) = 2e-034
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -2 / -3
Query: 1010 NSGCQMPCRIQQCHGGIPL*A*RSTPASAVSQSC 909
+SG QM CR ++C G PL A*RSTP S VSQ+C
Sbjct: 699 SSGRQMLCRTRRCP*GFPLWA*RSTPVSEVSQNC 598
Score = 34.5 bits (69), Expect(4) = 2e-034
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3 / -1
Query: 409 FCLIASL*HIGCTCYSGSYD 350
FCL+ASL I C CY SYD
Sbjct: 95 FCLVASLQLIQCACYGRSYD 36
>gb|CN819665.1|CN819665 HRO4402_G05_M10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G05_M10, mRNA
sequence
Length = 632
Score = 195 bits (420), Expect(2) = 8e-068
Identities = 80/112 (71%), Positives = 95/112 (84%)
Frame = +2 / +2
Query: 698 ETVENVLSNMVDIRDVADALLLTYEKPEASGRYICSSHAIKISDMINILKTMYPSYPYPK 877
ETVEN N+VD+RDVADA+LL YE EASGRYICSS IK SD+I+ILKT+YP+YPYPK
Sbjct: 143 ETVENKYRNLVDVRDVADAILLAYENAEASGRYICSSSPIKASDLISILKTLYPTYPYPK 322
Query: 878 NFVEDDVNSVYSSEKLQKLGWTFKPIEESLRDTVESYKAFGILN*TSN*DCF 1033
NF E + ++ YSSEKLQKLGWTF+PIEE+LRD+VESY+A G+LN* SN D F
Sbjct: 323 NFAEVEHSTTYSSEKLQKLGWTFRPIEETLRDSVESYRASGVLN*ASNRDKF 478
Score = 139 bits (298), Expect(2) = 4e-047
Identities = 63/110 (57%), Positives = 76/110 (69%)
Frame = -3 / -2
Query: 1027 VLVGCSIQDAKCLVGFNSVTEGFLYRLEGPPQLLQFLRAVYRVDIIFHKIFGIRVRRIHG 848
V +GCS+QDA+C VG ++V EGFLY EGPPQ L+FLR V F K+FGIRVR I G
Sbjct: 472 VSIGCSVQDARCSVGLDAVPEGFLYGPEGPPQFLKFLRTVSGTVFHFCKVFGIRVRWI*G 293
Query: 847 LQYVYHIRNFYCM*TADVSSRRFWLFVSQKKSISNITNIHHITEYIFNSL 698
LQY Y IR F TA V+SRR +F+ QK SI NI+NIH + +IF SL
Sbjct: 292 LQYAYQIRGFNW*RTAYVASRRLCIFICQKNSIGNISNIH*VPVFIFYSL 143
Score = 106 bits (227), Expect(2) = 1e-034
Identities = 47/83 (56%), Positives = 57/83 (68%)
Frame = +1 / +1
Query: 772 KARSVWTIHLQFTCNKNF*YDKHTEDHVSVLPLSQKFCGR*CQLCIQL*ETAEAGVDLQA 951
K R VWT+H+QF N + * DKHTED +S +PLSQK C Q +Q *ET+E GVDLQA
Sbjct: 217 KCRGVWTLHMQFFTN*SL*SDKHTEDLISNVPLSQKLCRSGTQYHLQF*ETSETGVDLQA 396
Query: 952 YRGIPP*HC*ILQGIWHPELNIQ 1020
+RG P +LQ IW PEL+IQ
Sbjct: 397 HRGNPQGQRRVLQSIWRPELSIQ 465
Score = 105 bits (223), Expect(2) = 7e-032
Identities = 57/111 (51%), Positives = 66/111 (59%)
Frame = +3 / +3
Query: 696 SRLLKMYSVIWWIFVXXXXXXXXXTKSQKRLDDTSAVHMQ*KFLI**TY*RPCIRLTLIP 875
+RL K+ + W+F K Q+RLD T AV Q K LI** Y*RP I+ TLIP
Sbjct: 141 TRL*KINTGT*WMFEMLPMLFFWHMKMQRRLDATYAVLHQLKPLI**AY*RPYIQRTLIP 320
Query: 876 KILWKMMSTLYTALRNCRSWGGPSSL*RNPSVTLLNPTRHLAS*IEHPTRT 1028
K L K + T LRN R+WGGPS *R PS T +PT HLAS* EHP T
Sbjct: 321 KTLQKWNTVPLTVLRNFRNWGGPSGP*RKPSGTASSPTEHLAS*TEHPIET 473
Score = 78.0 bits (164), Expect(2) = 8e-068
Identities = 30/42 (71%), Positives = 37/42 (88%)
Frame = +2 / +2
Query: 566 EALAFAAKTGLDVVTVCPSLVFGPLMQPTVNLSSEMILKYFK 691
EA A+AAKTGLD+VT+CPSLV GPL+Q TVN SS+++L YFK
Sbjct: 8 EAFAYAAKTGLDIVTICPSLVIGPLLQSTVNTSSKVLLSYFK 133
Score = 64.8 bits (135), Expect(2) = 4e-047
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = -3 / -2
Query: 691 FEIFKDHFAAQIYCRLHQGSKY**RTNSYNVQPCFCCKSKS 569
F+I K+ F A++YCRL QG+ Y** NSYN+Q FCC SKS
Sbjct: 133 FKITKEDFTARVYCRLQQGANY**WANSYNIQSSFCCISKS 11
Score = 61.6 bits (128), Expect(3) = 1e-033
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = -1 / -3
Query: 690 LKYLRIISLLKFTVGCIKGPNTNDGQTVTTSSPVFAAKARAS 565
LK LR LL FTV C KGP TNDGQ VT SSPVFAA A+AS
Sbjct: 132 LK*LRRTLLLVFTVDCSKGPITNDGQIVTISSPVFAA*AKAS 7
Score = 58.8 bits (122), Expect(3) = 1e-033
Identities = 32/64 (50%), Positives = 32/64 (50%)
Frame = -1 / -3
Query: 882 KFLG*G*DGYMVFSMFIISEIFIACELQMYRPDASGFXXXXXXXXXXXXXXXILLSTFST 703
KFLG*G GY VFSM I SE I EL M RPDAS F L FST
Sbjct: 327 KFLG*GYVGYKVFSMLIRSEALIGEELHM*RPDASAFSYAKRIASATSRTSTRFLYLFST 148
Query: 702 VSRS 691
VS S
Sbjct: 147 VSCS 136
Score = 56.5 bits (117), Expect(3) = 1e-033
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1 / -3
Query: 1044 NSRWKQS*LDVQFRMPNAL*DSTVSRRDSSIGLKVHPSF 928
+ R S LD QFR P+AL*DST+S R SS+GLKVHPSF
Sbjct: 489 HQRLNLSRLDAQFRTPDAL*DSTLSLRVSSMGLKVHPSF 373
Score = 55.6 bits (115), Expect(2) = 1e-034
Identities = 24/43 (55%), Positives = 27/43 (62%)
Frame = +1 / +1
Query: 565 RSSCFCSKNRAGRCNCLSVISIWTLDAAYSKFEQRNDP*IFQR 693
R C CSKN G CN L +IS W L A YSK EQ + P*+F R
Sbjct: 7 RGFCLCSKNWTGYCNYLPIISNWPLAAVYSKHEQ*SPP*LF*R 135
Score = 55.1 bits (114), Expect(3) = 3e-026
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = -2 / -1
Query: 1019 WMFNSGCQMPCRIQQCHGGIPL*A*RSTPASAVSQSC 909
WM +SG QM CR ++C G PL A*RSTP S VSQ+C
Sbjct: 464 WMLSSGRQMLCRTRRCP*GFPLWA*RSTPVSEVSQNC 354
Score = 51.9 bits (107), Expect(3) = 3e-026
Identities = 24/40 (60%), Positives = 26/40 (65%)
Frame = -2 / -1
Query: 890 LPQNFWDKGKTDTWSSVCLSYQKFLLHVNCRCIVQTLLAF 771
L Q+FWDKG D SSVCLS Q+ L NC C VQT L F
Sbjct: 335 LLQSFWDKGTLDIRSSVCLSDQRL*LVKNCICSVQTPLHF 216
Score = 47.8 bits (98), Expect(2) = 7e-032
Identities = 26/42 (61%), Positives = 28/42 (66%)
Frame = +3 / +3
Query: 567 KLLLLQQKQGWTL*LFVRH*YLDP*CSLQ*I*AAK*SLNISK 692
+LLL+QQK W L*LF H* L P CSLQ* A K SL I K
Sbjct: 9 RLLLMQQKLDWIL*LFAHH**LAPCCSLQ*TRAVKSSLVILK 134
Score = 44.6 bits (91), Expect(3) = 3e-026
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -2 / -1
Query: 692 L*NI*GSFRCSNLL*AASRVQILMTDKQLQRPALFLLQKQE 570
L*N *G CS LL* A+R Q+LM K LQ P FLL KQ+
Sbjct: 134 L*NN*GGLYCSCLL*TAARGQLLMMGK*LQYPVQFLLHKQK 12
>gb|CN818757.1|CN818757 HRO4468_C07_E14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_C07_E14, mRNA sequence
Length = 805
Score = 119 bits (254), Expect(2) = 6e-055
Identities = 47/112 (41%), Positives = 72/112 (64%)
Frame = +2 / +3
Query: 350 VIAPAVTGTTNVLKACYEAKVRRVVVVSSCGAVYANPIYPKGKVFDEDCWSDEDYCRKKE 529
++ PAV GT NVLKAC +V+++++VSS A +P K+ DE CWSD++ C++ E
Sbjct: 18 MLDPAVKGTMNVLKACSATEVKKLILVSSIAASCFTLDWPPDKIKDESCWSDKELCKENE 197
Query: 530 DWYLVSKTLSEREALAFAAKTGLDVVTVCPSLVFGPLMQPTVNLSSEMILKY 685
+WY ++KT +E AL + K GL + T+ P LVFGPL+Q ++ +L Y
Sbjct: 198 NWYSLAKTTAEEMALEYGLKNGLHIATLLPGLVFGPLLQHVAVNTTSNVLIY 353
Score = 111 bits (236), Expect(2) = 6e-055
Identities = 45/103 (43%), Positives = 68/103 (66%)
Frame = +2 / +3
Query: 698 ETVENVLSNMVDIRDVADALLLTYEKPEASGRYICSSHAIKISDMINILKTMYPSYPYPK 877
+T+ N MVD+RDVA+ALLL Y K +S RYICS + + D++ ILK MYP+Y
Sbjct: 372 DTMNNKFYPMVDVRDVAEALLLLYNKAGSSERYICSLDQMDLKDLLGILKNMYPNYRCTD 551
Query: 878 NFVEDDVNSVYSSEKLQKLGWTFKPIEESLRDTVESYKAFGIL 1006
V+ D + +S+KL+ LGW + +EE+L D+++SY+ G+L
Sbjct: 552 KMVDVDYKVIVTSDKLKNLGWKPRKLEETLEDSIKSYEKAGLL 680
>gb|CN819392.1|CN819392 HRO4405_E01_I01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_E01_I01, mRNA
sequence
Length = 717
Score = 81.7 bits (172), Expect(3) = 2e-035
Identities = 35/90 (38%), Positives = 51/90 (56%)
Frame = +2 / +1
Query: 413 RRVVVVSSCGAVYANPIYPKGKVFDEDCWSDEDYCRKKEDWYLVSKTLSEREALAFAAKT 592
R +V S Y V DE +S + C K + WY++SKTL+E A F+
Sbjct: 214 RVIVTSSMAAVGYNGKPKTPNVVVDETWFSHAELCEKGQQWYVLSKTLAEEAAWKFSKDN 393
Query: 593 GLDVVTVCPSLVFGPLMQPTVNLSSEMILK 682
++VT+ P++V GPL+QPT+N S+E ILK
Sbjct: 394 AFEIVTINPAMVIGPLLQPTLNTSAEAILK 483
Score = 51.0 bits (105), Expect(3) = 2e-035
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +2 / +1
Query: 701 TVENVLSNMVDIRDVADALLLTYEKPEASGRYICSSHAIKISDMINILKTMYPSYPYPKN 880
T N ++++DVA A +L YE P A+GRY S+++N + MYP P
Sbjct: 505 TYPNFSFGWINVKDVALAHILAYEVPSANGRYCMVERVAHHSELVNFIHKMYPDIPVAHK 684
Query: 881 FVED 892
+D
Sbjct: 685 CADD 696
Score = 50.1 bits (103), Expect(3) = 2e-035
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +2 / +1
Query: 203 LEGAEERLQLLKADLMDYDSIASAVAGCEGVFHVASP 313
L+GA++RL L KA L++ S A+ GCE VFH ASP
Sbjct: 4 LDGAKDRLHLFKASLLEEGSFDDAIDGCECVFHTASP 114
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 14,580,005
Number of Sequences: 8143
Number of extensions: 213898
Number of successful extensions: 1354
Number of sequences better than 1.0e-020: 4
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 443774565
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)