TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131537.2.623
         (863 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815174.1|CN815174  HRO4506_F11_K22ZS5 Lib AA071E1X Aven...    97   1e-021
gb|CN817691.1|CN817691  HRO4453_G11_N21ZS5 Lib AA070E1X Aven...    98   2e-021

>gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4506_F11_K22, mRNA sequence
          Length = 584

 Score = 97.3 bits (206), Expect(2) = 1e-021
 Identities = 41/49 (83%), Positives = 45/49 (91%)
 Frame = +1 / +3

                                                            
Query: 262 KIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 408
           +II DRET RSRGFGFVTFS+E +MR AIEGMNGK+LDGRNITVNEAQS
Sbjct: 12  QIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGKDLDGRNITVNEAQS 158




 Score = 23.1 bits (44), Expect(2) = 1e-021
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2 / +1

                                
Query: 587 ERWGPLRPSYLVRFCYRVHPS 649
           E WGP  P  L   C   +PS
Sbjct: 367 EWWGPSWPVILAIVCVSCYPS 429



>gb|CN817691.1|CN817691 HRO4453_G11_N21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4453_G11_N21, mRNA sequence
          Length = 565

 Score = 97.7 bits (207), Expect = 2e-021
 Identities = 39/77 (50%), Positives = 54/77 (70%)
 Frame = +1 / +2

                                                                       
Query: 172 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 351
           +R +VG L W  +D  L   FS +GEVL + ++ DRET RSRGFGFVT +++D + SAI 
Sbjct: 38  FRAYVGNLPWQAEDSRLVQLFSQHGEVLNATVVYDRETGRSRGFGFVTMASKDDLDSAIS 217

                            
Query: 352 GMNGKELDGRNITVNEA 402
            ++G+ELDGR + VN A
Sbjct: 218 ALDGEELDGRPLRVNVA 268



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,513,095
Number of Sequences: 8143
Number of extensions: 53896
Number of successful extensions: 538
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 297030472
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)