TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.536
(819 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814915.1|CN814915 HRO4503_H05_P09ZS5 Lib AA071E1X Aven... 284 2e-077
gb|CN816851.1|CN816851 HRO4525_E06_I11ZS5 Lib AA071E1X Aven... 283 2e-077
gb|CN819420.1|CN819420 HRO4405_G10_M19ZS5 Lib AA069E1X Aven... 193 3e-050
gb|CN816312.1|CN816312 HRO4519_C11_F21ZS5 Lib AA071E1X Aven... 171 9e-044
>gb|CN814915.1|CN814915 HRO4503_H05_P09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_H05_P09, mRNA sequence
Length = 725
Score = 284 bits (614), Expect = 2e-077
Identities = 121/160 (75%), Positives = 134/160 (83%)
Frame = -2 / +1
Query: 782 PGTERGDAEAPHLRRREMATVPGDLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNV 603
P R A + R MATV L+W++V+KNN FL+KQFGN NAKVQF+KEPNNLYNV
Sbjct: 19 PIRSRSAARHSNHRLG*MATVSDSLVWELVKKNNCFLIKQFGNSNAKVQFSKEPNNLYNV 198
Query: 602 HSYKYSGLANKKTVTIQPAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVK 423
HSYKYSGLANKKTVT+QPAA K+ VVLSTTKTKKQN PA +HK+VMRKEFRKMAKAVK
Sbjct: 199 HSYKYSGLANKKTVTVQPAADKEMTVVLSTTKTKKQNKPAAFTHKTVMRKEFRKMAKAVK 378
Query: 422 NQVGDNYYRPDLTKSALGRLSSVYRSLQVAKSGVKKKNRQ 303
NQV DNYYRPDLTK AL RLS+V+RSLQVAKSGVKKKNRQ
Sbjct: 379 NQVSDNYYRPDLTKPALARLSAVHRSLQVAKSGVKKKNRQ 498
Score = 231 bits (498), Expect = 2e-061
Identities = 107/141 (75%), Positives = 114/141 (80%)
Frame = +1 / -1
Query: 304 CLFFFLTPDLATWRLRYTELSLPRADLVRSGL**LSPTWFFTALAILRNSLRITDLWLSF 483
CLFFFLTPDLATWRLR T LSL RA LV+SGL**LS TWF TALAILRNSLR+T LW+
Sbjct: 497 CLFFFLTPDLATWRLR*TALSLARAGLVKSGL**LSLTWFLTALAILRNSLRMTVLWVKA 318
Query: 484 AGVFCFLVLVVERTTAESFPAAGWIVTVFLFAKPEYL*ECTL*RLLGSLVNCTLALPLPN 663
AG+FCF VLVVERTT S AAG VTVFLFA+PEYL*E TL*RLLGSL+N TLAL LPN
Sbjct: 317 AGLFCFFVLVVERTTVISLSAAGCTVTVFLFARPEYL*EWTL*RLLGSLLN*TLALLLPN 138
Query: 664 CFTRKELFFLTICQIRSPGTV 726
C RK+LFFLT Q R TV
Sbjct: 137 CLIRKQLFFLTSSQTRESETV 75
Score = 215 bits (465), Expect = 5e-057
Identities = 95/148 (64%), Positives = 107/148 (72%)
Frame = -1 / +3
Query: 747 SPAKGNGDRSRGSDLADCEEEQLLPGEAVWQRQCQGAVHQGAQQPLQCTLLQVLWLSKQE 568
SP + NGD S L C+EEQLLP +AVWQ+Q QG+V QGAQQPLQC LLQVLW KQE
Sbjct: 54 SPVRINGDGFGFSGLGACQEEQLLPDQAVWQQQRQGSVQQGAQQPLQCPLLQVLWPGKQE 233
Query: 567 NCNDPASCWKGLGCGPLYYQDQEAEHTREAQPQVCNAQGVPQDGQGCEKPGWRQLLQA*S 388
+ + A C G CGPL+ QD+EAE TR PQ C+AQGVPQDGQG ++PG RQLLQA*
Sbjct: 234 DSDCAAGC**GDDCGPLHDQDKEAEQTRCLHPQDCHAQGVPQDGQGRQEPGQRQLLQA*L 413
Query: 387 DQVGPW*AELCVPQPPGCQVWCQEEEQA 304
DQ AE PQPPGCQVWC EEEQA
Sbjct: 414 DQACSRKAECSSPQPPGCQVWC*EEEQA 497
Score = 203 bits (437), Expect(2) = 5e-058
Identities = 80/127 (62%), Positives = 85/127 (66%)
Frame = +2 / -2
Query: 284 HRLXXXXXXXXXXHQTWQPGGCGTQSSAYQGPTWSDQACNSCRQPGFSQPWPSCGTPCAL 463
HR HQTWQPGGCG SA + WS QAC+SCR PG +PWPSCGTPCA
Sbjct: 517 HRSILLTACSSS*HQTWQPGGCGELHSALREQAWSSQACSSCR*PGS*RPWPSCGTPCA* 338
Query: 464 QTCG*ASRVCSASWSW**RGPQPSPFQQLAGSLQFSCLLSQSTCRSVHCRGCWAPW*TAP 643
Q+CG* RVCSAS SW RGPQ SP+QQ A SCL QSTCRS HCRGCWAP *T P
Sbjct: 337 QSCG*RQRVCSASLSWSWRGPQSSPYQQPAAQSLSSCLPGQSTCRSGHCRGCWAPC*TEP 158
Query: 644 WHCRCQT 664
W C CQT
Sbjct: 157 WRCCCQT 137
Score = 132 bits (282), Expect = 9e-032
Identities = 63/95 (66%), Positives = 71/95 (74%)
Frame = +3 / -3
Query: 303 LPVLLLDTRLGNLEAAVHRAQPTKGRLGQIRPVIVVANLVFHSLGHLAELLAHYRLVAEL 482
LPVLLL+TRLGNLEAAV+ QP + RLGQ+RPV+VVA+LV LGHLAELLAH LV E
Sbjct: 498 LPVLLLNTRLGNLEAAVNCTQPCESRLGQVRPVVVVADLVLDGLGHLAELLAHDSLVGEG 319
Query: 483 RGCVLLLGLGSREDHSRVLSSSWLDRYSFLVC*AR 587
G VLLL LG EDHS +L SS L + LVC AR
Sbjct: 318 SGFVLLLCLGRGEDHSHLLISSRLHSHCLLVCQAR 214
Score = 81.3 bits (171), Expect(2) = 2e-025
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3 / +2
Query: 460 CARSSARWPRL*KTRLATTITGLI*PSRPLVG*ALCTAASRLPSLVSRRRTGSLRTKPV 284
CARSSARWPR +TR ATT TGL *PS G* TAASRLPSLV RRRTGS + P+
Sbjct: 341 CARSSARWPRPSRTRSATTTTGLT*PSLLSQG*VQFTAASRLPSLVLRRRTGSKQDGPM 517
Score = 49.2 bits (101), Expect(2) = 2e-025
Identities = 31/69 (44%), Positives = 36/69 (52%)
Frame = -3 / +2
Query: 748 ISGEGKWRPFQGI*SGRL*GRTTPSW*SSLATAMPRCXXXXXXXXXXXXXXXXTLA*QTR 569
I+G KWR F+ + SG L RTT S SSLATA PR TLA QTR
Sbjct: 53 ITG*DKWRRFRILWSGSLSRRTTAS*SSSLATATPRFSSARSPTTSTMSTPTSTLAWQTR 232
Query: 568 KL*RSSQLL 542
+ * S+LL
Sbjct: 233 RQ*LCSRLL 259
Score = 36.8 bits (74), Expect(2) = 5e-058
Identities = 19/31 (61%), Positives = 19/31 (61%)
Frame = +3 / -3
Query: 651 AVAKLLHQEGVVLPHNLPDQIPWNGRHFPSP 743
AVAKLL QE VVL LPDQ N RH P
Sbjct: 150 AVAKLLDQEAVVLLDKLPDQRIRNRRHLS*P 58
>gb|CN816851.1|CN816851 HRO4525_E06_I11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_E06_I11, mRNA sequence
Length = 698
Score = 283 bits (613), Expect = 2e-077
Identities = 120/160 (75%), Positives = 133/160 (83%)
Frame = -2 / +2
Query: 782 PGTERGDAEAPHLRRREMATVPGDLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNV 603
P R A + R MATV L+W++V+KNN FL+KQFGN NAKVQF+KEPNNLYNV
Sbjct: 11 PKPSRSAARHSNHRLG*MATVSDSLVWELVKKNNCFLIKQFGNSNAKVQFSKEPNNLYNV 190
Query: 602 HSYKYSGLANKKTVTIQPAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVK 423
HSYKYSGLANKKTVT+QPAA K+ VVLSTTKTKKQN PA +HK+VMRKEFRKMAKAVK
Sbjct: 191 HSYKYSGLANKKTVTVQPAADKEMTVVLSTTKTKKQNNPAAFTHKTVMRKEFRKMAKAVK 370
Query: 422 NQVGDNYYRPDLTKSALGRLSSVYRSLQVAKSGVKKKNRQ 303
NQV DNYYRPDLTK L RLS+V+RSLQVAKSGVKKKNRQ
Sbjct: 371 NQVSDNYYRPDLTKPVLARLSAVHRSLQVAKSGVKKKNRQ 490
Score = 226 bits (488), Expect = 4e-060
Identities = 105/141 (74%), Positives = 112/141 (79%)
Frame = +1 / -3
Query: 304 CLFFFLTPDLATWRLRYTELSLPRADLVRSGL**LSPTWFFTALAILRNSLRITDLWLSF 483
CLFFFLTPDLATWRLR T LSL R LV+SGL**LS TWF TALAILRNSLR+T LW+
Sbjct: 489 CLFFFLTPDLATWRLR*TALSLARTGLVKSGL**LSLTWFLTALAILRNSLRMTVLWVKA 310
Query: 484 AGVFCFLVLVVERTTAESFPAAGWIVTVFLFAKPEYL*ECTL*RLLGSLVNCTLALPLPN 663
AG+FCF VLVVERTT S AAG VTVFLFA+PEYL*E TL*RLLGSL+N TLAL LPN
Sbjct: 309 AGLFCFFVLVVERTTVISLSAAGCTVTVFLFARPEYL*EWTL*RLLGSLLN*TLALLLPN 130
Query: 664 CFTRKELFFLTICQIRSPGTV 726
C RK+LFFLT Q TV
Sbjct: 129 CLIRKQLFFLTSSQTSESETV 67
Score = 223 bits (482), Expect = 2e-059
Identities = 95/148 (64%), Positives = 109/148 (73%)
Frame = -1 / +1
Query: 747 SPAKGNGDRSRGSDLADCEEEQLLPGEAVWQRQCQGAVHQGAQQPLQCTLLQVLWLSKQE 568
SP + NGD + L C+EEQLLP +AVWQ+Q QG+V QGAQQPLQC LLQVLW KQE
Sbjct: 46 SPVRINGDGFGFTGLGACQEEQLLPDQAVWQQQRQGSVQQGAQQPLQCPLLQVLWPGKQE 225
Query: 567 NCNDPASCWKGLGCGPLYYQDQEAEHTREAQPQVCNAQGVPQDGQGCEKPGWRQLLQA*S 388
+ + A C +G CGPL+ QD+EAE R PQ C+AQGVPQDGQGC++PG RQLLQA*
Sbjct: 226 DSDCAACC*QGDDCGPLHDQDKEAEQPRCLHPQDCHAQGVPQDGQGCQEPGQRQLLQA*L 405
Query: 387 DQVGPW*AELCVPQPPGCQVWCQEEEQA 304
DQ AE PQPPGCQVWCQEEEQA
Sbjct: 406 DQACSCKAECSSPQPPGCQVWCQEEEQA 489
Score = 200 bits (432), Expect(2) = 3e-057
Identities = 79/114 (69%), Positives = 81/114 (71%)
Frame = +2 / -1
Query: 323 HQTWQPGGCGTQSSAYQGPTWSDQACNSCRQPGFSQPWPSCGTPCALQTCG*ASRVCSAS 502
HQTWQPGGCG SA Q WS QAC+SCR PG QPWPSCGTPCA Q+CG* R CSAS
Sbjct: 470 HQTWQPGGCGELHSALQEQAWSSQACSSCR*PGS*QPWPSCGTPCA*QSCG*RQRGCSAS 291
Query: 503 WSW**RGPQPSPFQQLAGSLQFSCLLSQSTCRSVHCRGCWAPW*TAPWHCRCQT 664
SW RGPQ SP QQ A SCL QSTCRS HCRGCWAP *T PW C CQT
Sbjct: 290 LSWSWRGPQSSPCQQQAAQSLSSCLPGQSTCRSGHCRGCWAPC*TEPWRCCCQT 129
Score = 138 bits (296), Expect = 1e-033
Identities = 66/95 (69%), Positives = 72/95 (75%)
Frame = +3 / -2
Query: 303 LPVLLLDTRLGNLEAAVHRAQPTKGRLGQIRPVIVVANLVFHSLGHLAELLAHYRLVAEL 482
LPVLLLDTRLGNLEAAV+ QP K RLGQ+RPV+VVA+LV SLGHLAELLAH LV E
Sbjct: 490 LPVLLLDTRLGNLEAAVNCTQPCKNRLGQVRPVVVVADLVLDSLGHLAELLAHDSLVGEG 311
Query: 483 RGCVLLLGLGSREDHSRVLSSSWLDRYSFLVC*AR 587
G VLLL LG EDHS +L SS L + LVC AR
Sbjct: 310 SGVVLLLCLGRGEDHSHLLVSSRLHSHCLLVCQAR 206
Score = 87.7 bits (185), Expect(2) = 3e-026
Identities = 42/53 (79%), Positives = 43/53 (81%)
Frame = -3 / +3
Query: 460 CARSSARWPRL*KTRLATTITGLI*PSRPLVG*ALCTAASRLPSLVSRRRTGS 302
CARSSARWPRL +TR ATT TGL *PS L G* TAASRLPSLVSRRRTGS
Sbjct: 333 CARSSARWPRLSRTRSATTTTGLT*PSLFLQG*VQFTAASRLPSLVSRRRTGS 491
Score = 45.5 bits (93), Expect(2) = 3e-026
Identities = 31/69 (44%), Positives = 34/69 (49%)
Frame = -3 / +3
Query: 748 ISGEGKWRPFQGI*SGRL*GRTTPSW*SSLATAMPRCXXXXXXXXXXXXXXXXTLA*QTR 569
I+G KWR F+ SG L RTT S SSLATA PR TLA QTR
Sbjct: 45 ITG*DKWRRFRIHWSGSLSRRTTAS*SSSLATATPRFSSARSPTTSTMSTPTSTLAWQTR 224
Query: 568 KL*RSSQLL 542
+ * S LL
Sbjct: 225 RQ*LCSLLL 251
Score = 36.3 bits (73), Expect(2) = 3e-057
Identities = 19/31 (61%), Positives = 19/31 (61%)
Frame = +3 / -2
Query: 651 AVAKLLHQEGVVLPHNLPDQIPWNGRHFPSP 743
AVAKLL QE VVL LPDQ N RH P
Sbjct: 142 AVAKLLDQEAVVLLDKLPDQ*IRNRRHLS*P 50
>gb|CN819420.1|CN819420 HRO4405_G10_M19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_G10_M19, mRNA
sequence
Length = 520
Score = 193 bits (416), Expect = 3e-050
Identities = 82/99 (82%), Positives = 90/99 (90%)
Frame = -2 / +3
Query: 593 KYSGLANKKTVTIQPAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQV 414
++SGLAN KTVTIQP+AG D AVVLSTTKTKKQN P+KL HK+VMRKEFRKMAKAVKNQV
Sbjct: 21 QFSGLANSKTVTIQPSAGDDKAVVLSTTKTKKQNAPSKLQHKNVMRKEFRKMAKAVKNQV 200
Query: 413 GDNYYRPDLTKSALGRLSSVYRSLQVAKSGVKKKNRQPT 297
+NYYRPDLT AL RLSSVYRSLQV+KSG+KKKNRQPT
Sbjct: 201 CNNYYRPDLTTPALARLSSVYRSLQVSKSGIKKKNRQPT 317
Score = 174 bits (374), Expect = 2e-044
Identities = 78/97 (80%), Positives = 80/97 (82%)
Frame = +1 / -1
Query: 298 VGCLFFFLTPDLATWRLRYTELSLPRADLVRSGL**LSPTWFFTALAILRNSLRITDLWL 477
VGCLFFFL PDL TWRLRYTELSL RA +VRSGL**L TWF TALAILRNSLRIT L
Sbjct: 316 VGCLFFFLMPDLETWRLRYTELSLARAGVVRSGL**LLQTWFLTALAILRNSLRITFLCW 137
Query: 478 SFAGVFCFLVLVVERTTAESFPAAGWIVTVFLFAKPE 588
S G FCFLVLVVERTTA S PA GWIVTV LFA+PE
Sbjct: 136 SLEGAFCFLVLVVERTTALSSPADGWIVTVLLFARPE 26
Score = 140 bits (300), Expect = 3e-034
Identities = 67/95 (70%), Positives = 72/95 (75%)
Frame = +3 / -3
Query: 303 LPVLLLDTRLGNLEAAVHRAQPTKGRLGQIRPVIVVANLVFHSLGHLAELLAHYRLVAEL 482
LPVLLLD RLGNLEAAVHRAQP K R GQIRPV+VVANLV SLGHLAELLAH+ LV EL
Sbjct: 311 LPVLLLDARLGNLEAAVHRAQPCKSRRGQIRPVVVVANLVLDSLGHLAELLAHHILVLEL 132
Query: 483 RGCVLLLGLGSREDHSRVLSSSWLDRYSFLVC*AR 587
R VLLLGLG ED+ V+S LD + V AR
Sbjct: 131 RRGVLLLGLGRGEDNGLVISRRRLDSHGLAVRQAR 27
Score = 132 bits (283), Expect = 7e-032
Identities = 60/97 (61%), Positives = 70/97 (72%)
Frame = -1 / +2
Query: 591 VLWLSKQENCNDPASCWKGLGCGPLYYQDQEAEHTREAQPQVCNAQGVPQDGQGCEKPGW 412
VLW +Q++ + PA + G PL+ QDQEAE A Q C+AQGVPQDGQGC++PG
Sbjct: 23 VLWPGEQQDRDYPAVGGR*QGRCPLHDQDQEAERPF*APAQECDAQGVPQDGQGCQEPGL 202
Query: 411 RQLLQA*SDQVGPW*AELCVPQPPGCQVWCQEEEQAA 301
+QLLQA*SD G AELCVPQPPG QVW QEEEQAA
Sbjct: 203 QQLLQA*SDHAGSCKAELCVPQPPGFQVWHQEEEQAA 313
Score = 129 bits (276), Expect = 6e-031
Identities = 52/89 (58%), Positives = 59/89 (66%)
Frame = +2 / -2
Query: 326 QTWQPGGCGTQSSAYQGPTWSDQACNSCRQPGFSQPWPSCGTPCALQTCG*ASRVCSASW 505
QTW+PGGCGTQSSA Q P WSDQAC+SC +PG QPWPSCGTPCA +C A + SASW
Sbjct: 288 QTWKPGGCGTQSSALQEPAWSDQACSSCCKPGS*QPWPSCGTPCASHSCAGA*KGRSASW 109
Query: 506 SW**RGPQPSPFQQLAGSLQFSCLLSQST 592
SW RG +P AG + C Q T
Sbjct: 108 SWSWRGQRPCHLPPTAG*SRSCCSPGQRT 22
Score = 99.6 bits (211), Expect = 6e-022
Identities = 45/55 (81%), Positives = 47/55 (85%)
Frame = -3 / +1
Query: 466 L*CARSSARWPRL*KTRLATTITGLI*PSRPLVG*ALCTAASRLPSLVSRRRTGS 302
+*CARSSARWPRL +TR ATT TGLI*P R L G*ALCTAASR PSL SRRRTGS
Sbjct: 148 M*CARSSARWPRLSRTRFATTTTGLI*PRRLLQG*ALCTAASRFPSLASRRRTGS 312
>gb|CN816312.1|CN816312 HRO4519_C11_F21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_C11_F21, mRNA sequence
Length = 509
Score = 171 bits (369), Expect = 9e-044
Identities = 73/85 (85%), Positives = 78/85 (91%)
Frame = -2 / +1
Query: 551 PAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSAL 372
P+AG D AVVLSTTKTKKQN PAKL HK+VMRKEFRKMAKAVKNQV +NYYRPDLTK AL
Sbjct: 1 PSAGDDKAVVLSTTKTKKQNAPAKLQHKNVMRKEFRKMAKAVKNQVCNNYYRPDLTKPAL 180
Query: 371 GRLSSVYRSLQVAKSGVKKKNRQPT 297
RLSSVYRSLQV+KSG+KKKNRQPT
Sbjct: 181 ARLSSVYRSLQVSKSGIKKKNRQPT 255
Score = 143 bits (307), Expect = 3e-035
Identities = 67/83 (80%), Positives = 67/83 (80%)
Frame = +1 / -1
Query: 298 VGCLFFFLTPDLATWRLRYTELSLPRADLVRSGL**LSPTWFFTALAILRNSLRITDLWL 477
VGCLFFFL PDL TWRLR TELSL RA LVRSGL**L TWF TALAILRNSLRIT L
Sbjct: 254 VGCLFFFLMPDLETWRLR*TELSLARAGLVRSGL**LLQTWFLTALAILRNSLRITFLCW 75
Query: 478 SFAGVFCFLVLVVERTTAESFPA 546
S AG FCFLV VVERTTA S PA
Sbjct: 74 SLAGAFCFLVFVVERTTALSSPA 6
Score = 126 bits (269), Expect = 6e-030
Identities = 60/80 (75%), Positives = 63/80 (78%)
Frame = +3 / -3
Query: 303 LPVLLLDTRLGNLEAAVHRAQPTKGRLGQIRPVIVVANLVFHSLGHLAELLAHYRLVAEL 482
LPVLLLD RLGNLEAAV RAQP K RLGQIRPV+VVANLV LGHLAELLAH+ LV EL
Sbjct: 249 LPVLLLDARLGNLEAAVDRAQPCKSRLGQIRPVVVVANLVLDGLGHLAELLAHHILVLEL 70
Query: 483 RGCVLLLGLGSREDHSRVLS 542
VLLLGL ED S V+S
Sbjct: 69 SRGVLLLGLCRGEDDSLVIS 10
Score = 123 bits (264), Expect = 3e-029
Identities = 54/82 (65%), Positives = 62/82 (75%)
Frame = -1 / +3
Query: 546 CWKGLGCGPLYYQDQEAEHTREAQPQVCNAQGVPQDGQGCEKPGWRQLLQA*SDQVGPW* 367
C + GC PL+ +DQEAE A Q C+AQGVPQDGQG ++PG +QLLQA*SDQ G
Sbjct: 6 CRR*QGCRPLHDKDQEAERPC*APAQECDAQGVPQDGQGRQEPGLQQLLQA*SDQAGSCK 185
Query: 366 AELCVPQPPGCQVWCQEEEQAA 301
AELC+PQPPG QVW QEEEQAA
Sbjct: 186 AELCLPQPPGFQVWHQEEEQAA 251
Score = 115 bits (246), Expect = 9e-027
Identities = 45/69 (65%), Positives = 51/69 (73%)
Frame = +2 / -2
Query: 326 QTWQPGGCGTQSSAYQGPTWSDQACNSCRQPGFSQPWPSCGTPCALQTCG*ASRVCSASW 505
QTW+PGGCG QSSA Q P WSDQAC+SC +PG +PWPSCGTPCA +C A + SASW
Sbjct: 226 QTWKPGGCGRQSSALQEPAWSDQACSSCCKPGS*RPWPSCGTPCASHSCAGA*QGRSASW 47
Query: 506 SW**RGPQP 532
S RG QP
Sbjct: 46 SLSWRGRQP 20
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,235,893
Number of Sequences: 8143
Number of extensions: 160994
Number of successful extensions: 1261
Number of sequences better than 1.0e-020: 4
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 278770402
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)