TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131537.2.444
         (1020 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821322.1|CN821322  HRO4424_A05_B10ZS5 Lib AA069E1X Aven...    99   3e-026

>gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4424_A05_B10, mRNA
           sequence
          Length = 457

 Score = 98.7 bits (209), Expect(2) = 3e-026
 Identities = 38/50 (76%), Positives = 46/50 (92%)
 Frame = +3 / +3

                                                             
Query: 480 VHIGDANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVN 629
           VHIGD+ VKCC LV+G+AGL+AA CLCTAIKAKVLD+S+YVP+AL +LVN
Sbjct: 3   VHIGDSKVKCCSLVQGVAGLTAAVCLCTAIKAKVLDLSLYVPLALSLLVN 152




 Score = 96.8 bits (205), Expect = 5e-021
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = -2 / -3

                                                                
Query: 638 AAAVDEHLQRDGHVDGNVQHLGLDGGAQARRRGEPGDALHERAALDVGVADVH 480
           +A VDE  +R+ HV+G V+HLGLDGGA+A RRGE GDALHERAALD+ VADVH
Sbjct: 161 SAVVDEQAERERHVEGEVEHLGLDGGAEAHRRGEAGDALHERAALDLAVADVH 3




 Score = 35.0 bits (70), Expect(2) = 3e-026
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3 / +3

                            
Query: 627 NCGCEVPPGYKCT*TTP 677
           +CGC VPPGY C *  P
Sbjct: 153 DCGCAVPPGYTCA*AIP 203



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 8,828,303
Number of Sequences: 8143
Number of extensions: 116151
Number of successful extensions: 765
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 356712525
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)