TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439314.1|BE439314 CDO1015_WHE05E08F ITEC CDO Oat cDNA ... 29 0.50
gb|CK780255.1|CK780255 umn220 UMN cDNA from oat Avena sativ... 29 0.50
gb|CN818966.1|CN818966 HRO4474_F03_L06ZS5 Lib AA070E1X Aven... 29 0.95
gb|CN819318.1|CN819318 HRO4452_E11_I22ZS5 Lib AA070E1X Aven... 29 0.95
gb|CN818408.1|CN818408 HRO4469_C01_F01ZS5 Lib AA070E1X Aven... 27 2.5
emb|A47134.1| Sequence 9 from Patent WO9529246 24 2.6
gb|CN815216.1|CN815216 HRO4507_B10_D19ZS5 Lib AA071E1X Aven... 27 3.4
gb|CN818465.1|CN818465 HRO4460_D08_G16ZS5 Lib AA070E1X Aven... 27 3.4
gb|CN814762.1|CN814762 HRO4502_C01_E02ZS5 Lib AA071E1X Aven... 26 4.6
gb|CN815291.1|CN815291 HRO4508_A10_B20ZS5 Lib AA071E1X Aven... 26 4.6
gb|CN815318.1|CN815318 HRO4508_D03_H06ZS5 Lib AA071E1X Aven... 26 4.6
gb|CN815955.1|CN815955 HRO4515_C10_F19ZS5 Lib AA071E1X Aven... 26 4.6
gb|CN817025.1|CN817025 HRO4527_D09_H17ZS5 Lib AA071E1X Aven... 26 4.6
gb|CN819894.1|CN819894 HRO4407_E03_J05ZS5 Lib AA069E1X Aven... 26 4.6
gb|CN820398.1|CN820398 HRO4418_H07_O14ZS5 Lib AA069E1X Aven... 26 4.6
gb|CN820539.1|CN820539 HRO4413_E08_I15ZS5 Lib AA069E1X Aven... 26 4.6
gb|CN821450.1|CN821450 HRO4425_E01_I01ZS5 Lib AA069E1X Aven... 26 4.6
gb|AA231653.1|AA231653 CDO122.F cDNA from oat Avena sativa ... 26 6.4
gb|BE439103.1|BE439103 CDO122_WHE2C0082F ITEC CDO Oat cDNA ... 26 6.4
gb|CN816076.1|CN816076 HRO4516_F09_L18ZS5 Lib AA071E1X Aven... 26 6.4
gb|CN818079.1|CN818079 HRO4472_A08_A16ZS5 Lib AA070E1X Aven... 26 6.4
gb|CN818824.1|CN818824 HRO4473_G11_XXXZS5 Lib AA070E1X Aven... 26 6.4
gb|CN819870.1|CN819870 HRO4407_A09_B17ZS5 Lib AA069E1X Aven... 26 6.4
gb|CN821448.1|CN821448 HRO4425_D11_G21ZS5 Lib AA069E1X Aven... 26 6.4
gb|J05486.1|ASTSSPA A.sativa seed storage protein gene, com... 26 6.4
gb|CN816555.1|CN816555 HRO4522_B01_C02ZS5 Lib AA071E1X Aven... 25 8.8
gb|CN818724.1|CN818724 HRO4468_A09_A18ZS5 Lib AA070E1X Aven... 25 8.8
gb|CN819690.1|CN819690 HRO4403_A06_B11ZS5 Lib AA069E1X Aven... 25 8.8
gb|CN820290.1|CN820290 HRO4417_F12_K23ZS5 Lib AA069E1X Aven... 25 8.8
gb|CN820432.1|CN820432 HRO4419_C09_F17ZS5 Lib AA069E1X Aven... 25 8.8
>gb|BE439314.1|BE439314 CDO1015_WHE05E08F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1015_WHE05E08, mRNA sequence
Length = 430
Score = 29.5 bits (58), Expect = 0.50
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1 / +2
Query: 217 RPTCSY*TL*ISSYCSRWFTSLCKIRAHAGGTCVFQ 324
RP C++ + S+C W T+ + R A F+
Sbjct: 239 RPHCAFMAFSLQSWCHSWSTAAWRARCSASSAVTFE 346
>gb|CK780255.1|CK780255 umn220 UMN cDNA from oat Avena sativa cDNA clone JMT4_E12 5',
mRNA sequence
Length = 268
Score = 29.5 bits (58), Expect = 0.50
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2 / +2
Query: 32 RQCFCCCSFLSTWGS 76
R FCCCS WGS
Sbjct: 41 RDWFCCCSLFVEWGS 85
>gb|CN818966.1|CN818966 HRO4474_F03_L06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_F03_L06, mRNA sequence
Length = 764
Score = 28.6 bits (56), Expect = 0.95
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 84 IITCILVEPILSGQLVVHF 140
I+ CIL P+LSG LV+H+
Sbjct: 630 IVHCIL*WPLLSGVLVLHY 686
>gb|CN819318.1|CN819318 HRO4452_E11_I22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_E11_I22, mRNA sequence
Length = 651
Score = 28.6 bits (56), Expect = 0.95
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 84 IITCILVEPILSGQLVVHF 140
I+ CIL P+LSG LV+H+
Sbjct: 516 IVHCIL*WPLLSGVLVLHY 572
>gb|CN818408.1|CN818408 HRO4469_C01_F01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_C01_F01, mRNA sequence
Length = 494
Score = 27.2 bits (53), Expect = 2.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = -2 / -2
Query: 416 LKHIYVHQCWQEKLSKTVNFLKCFHL 339
+KH+ + C ++ + F++CF+L
Sbjct: 208 MKHLTLDNCCDKRTTAKTRFIRCFNL 131
>emb|A47134.1| Sequence 9 from Patent WO9529246
Length = 1926
Score = 24.4 bits (47), Expect(2) = 2.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / -3
Query: 401 VHQCWQE 381
VHQCWQE
Sbjct: 343 VHQCWQE 323
Score = 22.6 bits (43), Expect(2) = 2.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2 / -3
Query: 155 HS*LSEVDHQLSAQNWFHQNTCNN 84
H LS+ H+LS W H C +
Sbjct: 280 HLKLSDGQHRLSP*FWGHPTACGS 209
>gb|CN815216.1|CN815216 HRO4507_B10_D19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_B10_D19, mRNA sequence
Length = 754
Score = 26.7 bits (52), Expect = 3.4
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2 / +2
Query: 26 CSRQCFCCCSFLSTWGSLQNYYMYF 100
C CFCC S + N YM +
Sbjct: 671 CLEYCFCCYCSQSNENHINNKYMMY 745
>gb|CN818465.1|CN818465 HRO4460_D08_G16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_D08_G16, mRNA sequence
Length = 481
Score = 26.7 bits (52), Expect = 3.4
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = -1 / +2
Query: 405 LCSSMLARKAEQNCEFPEMLPFVWTFSLEYTCASCM 298
+C+ K E P + W YTCASC+
Sbjct: 254 ICTPGRFPKNTNQVELPPCQ*YNWLLGAIYTCASCI 361
>gb|CN814762.1|CN814762 HRO4502_C01_E02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_C01_E02, mRNA sequence
Length = 525
Score = 26.3 bits (51), Expect = 4.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2 / -3
Query: 464 CSQTMVVDYKIFQKSRLKHIYVHQCWQ 384
C ++VV+ ++ HIYVH+ W+
Sbjct: 436 CIYSVVVECDMYMMYTSIHIYVHEEWK 356
>gb|CN815291.1|CN815291 HRO4508_A10_B20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_A10_B20, mRNA sequence
Length = 184
Score = 26.3 bits (51), Expect = 4.6
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -2 / +2
Query: 416 LKHIYVHQCW 387
++H+YVH CW
Sbjct: 149 IRHLYVHWCW 178
>gb|CN815318.1|CN815318 HRO4508_D03_H06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_D03_H06, mRNA sequence
Length = 544
Score = 26.3 bits (51), Expect = 4.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 464 CSQTMVVDYKIFQKSRLKHIYVHQCWQ 384
C ++VV+ ++ HIYVH+ W+
Sbjct: 346 CIYSVVVECDMYMMYTSIHIYVHEEWK 266
>gb|CN815955.1|CN815955 HRO4515_C10_F19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_C10_F19, mRNA sequence
Length = 716
Score = 26.3 bits (51), Expect = 4.6
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = -2 / -2
Query: 362 NFLKCFHLCGHFHWNTHVPPAW 297
NF+KCF H +W W
Sbjct: 304 NFIKCFQDGAHLNWRNRFVGFW 239
>gb|CN817025.1|CN817025 HRO4527_D09_H17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_D09_H17, mRNA sequence
Length = 770
Score = 26.3 bits (51), Expect = 4.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1 / -2
Query: 484 CGF*YSQGWYTNIXFQCRIWVPQLFK 561
C F Y Q Y NI CR + P + K
Sbjct: 670 CSFRYVQSLYLNIVSPCRSFGPAINK 593
>gb|CN819894.1|CN819894 HRO4407_E03_J05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_E03_J05, mRNA
sequence
Length = 418
Score = 26.3 bits (51), Expect = 4.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2 / -2
Query: 464 CSQTMVVDYKIFQKSRLKHIYVHQCWQ 384
C ++VV+ ++ HIYVH+ W+
Sbjct: 324 CIYSVVVECDMYMMYTSIHIYVHEEWK 244
>gb|CN820398.1|CN820398 HRO4418_H07_O14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_H07_O14, mRNA
sequence
Length = 598
Score = 26.3 bits (51), Expect = 4.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 499 SQGWYTNIXFQCRIW 543
SQ W+ + FQ RIW
Sbjct: 325 SQAWHRQMKFQSRIW 369
>gb|CN820539.1|CN820539 HRO4413_E08_I15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_E08_I15, mRNA
sequence
Length = 543
Score = 26.3 bits (51), Expect = 4.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2 / -3
Query: 422 SRLKHIYVHQCWQ 384
SR KH+ V CWQ
Sbjct: 487 SRAKHVLVSSCWQ 449
>gb|CN821450.1|CN821450 HRO4425_E01_I01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_E01_I01, mRNA
sequence
Length = 615
Score = 26.3 bits (51), Expect = 4.6
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +2 / +2
Query: 38 CFCCCSFLSTWGSLQNYY 91
C CCCS + W YY
Sbjct: 107 CSCCCSSCTFWAFNCGYY 160
>gb|AA231653.1|AA231653 CDO122.F cDNA from oat Avena sativa cDNA clone CDO122, mRNA
sequence
Length = 601
Score = 25.8 bits (50), Expect = 6.4
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2 / -2
Query: 29 SRQCFCCCSFLSTW 70
SRQC C C TW
Sbjct: 96 SRQCGCTCRLRDTW 55
>gb|BE439103.1|BE439103 CDO122_WHE2C0082F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO122_WHE2C0082, mRNA sequence
Length = 437
Score = 25.8 bits (50), Expect = 6.4
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2 / -2
Query: 29 SRQCFCCCSFLSTW 70
SRQC C C TW
Sbjct: 115 SRQCGCTCRLRDTW 74
>gb|CN816076.1|CN816076 HRO4516_F09_L18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_F09_L18, mRNA sequence
Length = 350
Score = 25.8 bits (50), Expect = 6.4
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = -1 / +2
Query: 339 VWTFSLEYTCASCM 298
+W +S+ YTC +C+
Sbjct: 269 MWVYSVTYTCKNCV 310
>gb|CN818079.1|CN818079 HRO4472_A08_A16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_A08_A16, mRNA sequence
Length = 701
Score = 25.8 bits (50), Expect = 6.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1 / +3
Query: 246 SQSLIAACRSFKCPHLGCLKIPY 178
S+S + +C+ K P+ CL PY
Sbjct: 444 SKSGLTSCKLVKMPYSSCLFAPY 512
>gb|CN818824.1|CN818824 HRO4473_G11_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_G11_XXX, mRNA sequence
Length = 539
Score = 25.8 bits (50), Expect = 6.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3 / +2
Query: 235 NSCM*VFQMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPL 116
+SC F++ ++L T F W I+ + K T+SC +
Sbjct: 416 SSCYYAFRVTHVKL*YGTFFFKWFCILCDIHGKDTSSCAI 535
>gb|CN819870.1|CN819870 HRO4407_A09_B17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_A09_B17, mRNA
sequence
Length = 444
Score = 25.8 bits (50), Expect = 6.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2 / -2
Query: 464 CSQTMVVDYKIFQKSRLKHIYVHQCWQ 384
C ++V++ ++ HIYVH+ W+
Sbjct: 326 CIYSVVIECDMYMMYTSIHIYVHEEWK 246
>gb|CN821448.1|CN821448 HRO4425_D11_G21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_D11_G21, mRNA
sequence
Length = 830
Score = 25.8 bits (50), Expect = 6.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2 / +1
Query: 386 QEKLSKTVNFLKCFHLCGHFHW 321
+EK + V+ L+C + CG +W
Sbjct: 7 EEKSQRRVHMLECKNSCGASYW 72
>gb|J05486.1|ASTSSPA A.sativa seed storage protein gene, complete cds
Length = 1548
Score = 25.8 bits (50), Expect = 6.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Frame = +2 / -2
Query: 32 RQCFCCCSFLSTWGSL 79
+ C CCC + W +L
Sbjct: 887 KNCCCCCCIMMAWTTL 840
>gb|CN816555.1|CN816555 HRO4522_B01_C02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_B01_C02, mRNA sequence
Length = 664
Score = 25.4 bits (49), Expect = 8.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +2 / +2
Query: 23 ACSRQCFCCCSFLSTW 70
AC+R C C C+ + W
Sbjct: 500 ACNRGCICHCACVVLW 547
>gb|CN818724.1|CN818724 HRO4468_A09_A18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_A09_A18, mRNA sequence
Length = 730
Score = 25.4 bits (49), Expect = 8.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3 / -3
Query: 160 IIIASYLKWTTSCPLKIGSTKIHVIIL* 77
+++A W T+CPL +G +L*
Sbjct: 533 VVVADLSFWLTNCPLILGLCSASFFLL* 450
>gb|CN819690.1|CN819690 HRO4403_A06_B11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_A06_B11, mRNA
sequence
Length = 356
Score = 25.4 bits (49), Expect = 8.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3 / +1
Query: 69 GEAYKIITCILVEPILSGQLVVHF 140
G+ + C++V+P SG VVH+
Sbjct: 139 GKGIIVCICLVVQPNKSGVSVVHY 210
>gb|CN820290.1|CN820290 HRO4417_F12_K23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_F12_K23, mRNA
sequence
Length = 268
Score = 25.4 bits (49), Expect = 8.8
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +2 / +1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCET 484
C+ LA++ ++W+ + P S +P+C T
Sbjct: 124 CTCILASLPSQHSRAIWLLFLPWLRRPNL*SFIPECNT 237
>gb|CN820432.1|CN820432 HRO4419_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_C09_F17, mRNA
sequence
Length = 630
Score = 25.4 bits (49), Expect = 8.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2 / +1
Query: 110 WFHQNTCNNFVSFPTLIKTSN 48
WF Q + +S PTL SN
Sbjct: 295 WFRQTLLSKLLSIPTLFVPSN 357
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,897,416
Number of Sequences: 8143
Number of extensions: 124500
Number of successful extensions: 1705
Number of sequences better than 10.0: 33
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 187498593
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)