TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCT19a08.yg.2.1
(645 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 145 3e-046
emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosom... 145 3e-046
emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4... 145 3e-046
ref|NM_117407.2| Arabidopsis thaliana unknown protein AT4G1... 145 4e-046
emb|AX506996.1| Sequence 1691 from Patent WO0216655 145 4e-046
dbj|AP002048.1| Arabidopsis thaliana genomic DNA, chromosom... 149 7e-046
ref|NM_113355.1| Arabidopsis thaliana protein binding AT3G2... 149 7e-046
emb|CR395125.1| Arabidopsis thaliana T-DNA flanking sequenc... 149 7e-046
emb|CR395124.1| Arabidopsis thaliana T-DNA flanking sequenc... 149 1e-044
emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosom... 137 2e-044
emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome... 137 2e-044
ref|NM_117983.2| Arabidopsis thaliana protein binding AT4G1... 137 2e-044
dbj|AB022223.1| Arabidopsis thaliana genomic DNA, chromosom... 136 1e-037
ref|NM_113179.3| Arabidopsis thaliana protein binding / str... 136 1e-037
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 149 1e-034
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 149 1e-034
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 145 1e-033
gb|BX841161.1|BX841161 BX841161 Arabidopsis thaliana Flower... 124 2e-032
emb|BX824256.1|CNS0A7QT Arabidopsis thaliana Full-length cD... 109 5e-028
emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosom... 107 7e-028
emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome ... 107 7e-028
ref|NM_119558.1| Arabidopsis thaliana protein binding AT4G3... 107 7e-028
gb|AC006438.4| Arabidopsis thaliana chromosome 2 clone F19G... 104 9e-028
ref|NM_127148.1| Arabidopsis thaliana structural constituen... 104 1e-027
dbj|AP000735.1| Arabidopsis thaliana genomic DNA, chromosom... 111 1e-027
ref|NM_112788.2| Arabidopsis thaliana protein binding / str... 111 1e-027
gb|AY091043.1| Arabidopsis thaliana unknown protein (At3g19... 111 1e-027
gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21... 108 3e-027
ref|NM_103837.1| Arabidopsis thaliana structural constituen... 108 3e-027
emb|AX507698.1| Sequence 2393 from Patent WO0216655 121 2e-026
gb|AC005698.1|AC005698 Genomic sequence for Arabidopsis tha... 121 2e-026
gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis tha... 121 2e-026
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 121 2e-026
ref|NM_104924.1| Arabidopsis thaliana LRX2 (LEUCINE-RICH RE... 121 2e-026
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 121 2e-026
gb|BT004135.1| Arabidopsis thaliana clone RAFL15-20-F01 (R2... 118 1e-025
gb|BT005020.1| Arabidopsis thaliana clone U20712 putative d... 118 1e-025
gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F2... 118 1e-025
ref|NM_127536.2| Arabidopsis thaliana protein binding AT2G1... 118 1e-025
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 118 1e-025
gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F... 113 2e-025
gb|AY026364.1| Arabidopsis thaliana leucine-rich repeat/ext... 113 2e-025
ref|NM_101076.1| Arabidopsis thaliana LRX1 (LEUCINE-RICH RE... 113 2e-025
emb|AX507988.1| Sequence 2683 from Patent WO0216655 113 2e-025
gb|G72110.1|G72110 At-8.5BJ-540 Arabidopsis genomic DNA (B.... 113 2e-025
dbj|AB025624.1| Arabidopsis thaliana genomic DNA, chromosom... 105 2e-024
ref|NM_112819.1| Arabidopsis thaliana protein binding AT3G1... 105 2e-024
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 113 6e-024
gb|AY096640.1| Arabidopsis thaliana At4g28370 mRNA sequence 112 1e-023
emb|CR379193.1| Arabidopsis thaliana transposon insertion S... 112 1e-023
emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome ... 112 1e-023
emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosom... 112 1e-023
ref|NM_118979.1| Arabidopsis thaliana protein binding AT4G2... 112 1e-023
ref|NM_118978.2| Arabidopsis thaliana ubiquitin-protein lig... 112 1e-023
emb|AL083604.1|CNS00OS6 Arabidopsis thaliana genome survey ... 111 3e-023
gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BA... 97 1e-022
gb|BT011626.1| Arabidopsis thaliana At1g49750 mRNA, complet... 97 1e-022
ref|NM_103862.2| Arabidopsis thaliana unknown protein AT1G4... 97 1e-022
emb|BX815680.1|CNS0ADZF Arabidopsis thaliana Full-length cD... 97 1e-022
gb|BT012269.1| Arabidopsis thaliana At1g49750 gene, complet... 97 1e-022
gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V ma... 106 7e-022
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 106 7e-022
gb|DQ056690.1| Arabidopsis thaliana leucine-rich repeat fam... 106 7e-022
ref|NM_122466.1| Arabidopsis thaliana protein binding AT5G2... 106 7e-022
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 106 7e-022
gb|AV440845.1|AV440845 AV440845 Arabidopsis thaliana above-... 95 2e-021
emb|AL096692.1|F17A13 Arabidopsis thaliana clone F17A13, **... 104 3e-021
gb|AY091036.1| Arabidopsis thaliana putative extensin (At4g... 104 3e-021
gb|AY117248.1| Arabidopsis thaliana putative extensin (At4g... 104 3e-021
gb|AY085352.1| Arabidopsis thaliana clone 147694 mRNA, comp... 104 3e-021
emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosom... 104 3e-021
ref|NM_119068.2| Arabidopsis thaliana protein binding AT4G2... 104 3e-021
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 145 bits (311), Expect(2) = 3e-046
Identities = 58/94 (61%), Positives = 71/94 (75%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V M VEQL+VAHN LSG +P +
Sbjct: 3672137 MNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPAS 3672316
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 3672317 ICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRR 3672418
Score = 137 bits (294), Expect(2) = 2e-044
Identities = 52/84 (61%), Positives = 63/84 (75%)
Frame = +2 / -2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+ NG +SC+P ++G L+ VTVFD SFN LVG LP + GM +EQL+VAHNR SG +P
Sbjct: 6190422 MENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPAT 6190243
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LPRL+N T SYNFFTGEPP C
Sbjct: 6190242 ICQLPRLENFTFSYNFFTGEPPVC 6190171
Score = 112 bits (239), Expect = 1e-023
Identities = 42/84 (50%), Positives = 60/84 (71%)
Frame = +2 / -2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
IN+ L C+PPEVG L ++ V D+S+NSLVGP+P +AG+ +EQL++ HN +G VP
Sbjct: 9952986 INSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFTGTVPLG 9952807
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
+C LP L N+T+SYN+F+ E C
Sbjct: 9952806 VCVLPSLLNVTVSYNYFSEEEGIC 9952735
Score = 107 bits (229), Expect = 3e-022
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
++N L C P E+G L VTVFD S NS +G LP G+ VE++D++ N+L+G VP
Sbjct: 12193831 MDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHN 12193652
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LP L NLT SYN+F+G+ SC
Sbjct: 12193651 ICQLPNLVNLTYSYNYFSGQGGSC 12193580
Score = 104 bits (222), Expect = 3e-021
Identities = 37/85 (43%), Positives = 60/85 (70%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VG+ E+ VFDVS+N+L+G +P ++ + +E L++AHN+ SG VP+
Sbjct: 10332394 LNNQLTGCIPESVGMFSEIEVFDVSYNALMGHVPDTISCLSAIEILNLAHNKFSGEVPDL 10332573
Query: 191 ICALPRLKNLTISYNFFTGEPPSCA 265
+C+L L NLT+++NFF+G C+
Sbjct: 10332574 VCSLRNLINLTVAFNFFSGFSSECS 10332648
Score = 88.1 bits (186), Expect(2) = 8e-024
Identities = 42/87 (48%), Positives = 51/87 (58%)
Frame = -1 / +2
Query: 261 QDGGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPTSELKL 82
Q GGSPVKKL* V+F + G Q+ +G P+ LCAT +CS IP G+ PTS LKL
Sbjct: 6190172 QTGGSPVKKL*LKVKFSNLGN*QIVAGILPENLLCATFNCSIETIPPILAGNDPTSSLKL 6190351
Query: 81 TSKTVTSRSKPTSGGTQESRPLLMGWI 1
S TVT ++P G QE P M I
Sbjct: 6190352 KSNTVTFFNRPICDGKQELNPFSMKMI 6190432
Score = 63.8 bits (133), Expect(2) = 2e-044
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +2 / -2
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DRRNCLP RP QR+P QCAAF S PPVDC
Sbjct: 6190164 LPGFDDRRNCLPARPAQRSPGQCAAFSSLPPVDC 6190063
Score = 62.0 bits (129), Expect(2) = 3e-046
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2 / +2
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DRRNCLP RP QR+P QC AF S+PPV+C
Sbjct: 3672395 LPEFDDRRNCLPGRPAQRSPGQCKAFLSRPPVNC 3672496
Score = 44.1 bits (90), Expect(2) = 8e-024
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -1 / +2
Query: 372 QSTGGCE*NAAHCCGVRCVGRLGRQFLLSPSEGTTRAQDG 253
QSTGG E AAHC G C G G+QF S + G R G
Sbjct: 6190064 QSTGGREEKAAHCPGDLCAGLAGKQFRRSSNPGNPRQTGG 6190183
>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36
Length = 199634
Score = 145 bits (311), Expect(2) = 3e-046
Identities = 58/94 (61%), Positives = 71/94 (75%)
Frame = +2 / +3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V M VEQL+VAHN LSG +P +
Sbjct: 46140 MNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPAS 46319
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 46320 ICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRR 46421
Score = 99.6 bits (211), Expect(2) = 3e-024
Identities = 49/85 (57%), Positives = 55/85 (64%)
Frame = -1 / -2
Query: 255 GGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPTSELKLTS 76
G SPVKKL* V+F S G Q+ +G PD LCAT SCST I T G+GPTS LKLTS
Sbjct: 46384 GASPVKKL*L*VKFSSFGN*QILAGIFPDNILCATLSCSTETISPTLSGNGPTSSLKLTS 46205
Query: 75 KTVTSRSKPTSGGTQESRPLLMGWI 1
TVT ++P S G QE RPL M I
Sbjct: 46204 NTVTFFNRPISDGKQELRPLFMKMI 46130
Score = 62.0 bits (129), Expect(2) = 3e-046
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2 / +3
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DRRNCLP RP QR+P QC AF S+PPV+C
Sbjct: 46398 LPEFDDRRNCLPGRPAQRSPGQCKAFLSRPPVNC 46499
Score = 34.1 bits (68), Expect(2) = 3e-024
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1 / -2
Query: 372 QSTGGCE*NAAHCCGVRCVGRLGRQFLLSPSEGTTR 265
Q TGG + NA HC G G G+QFL S + G +
Sbjct: 46498 QFTGGRDKNALHCPGDL*AGLPGKQFLRSSNSGNLK 46391
>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence
(ESSA project)
Length = 95432
Score = 145 bits (311), Expect(2) = 3e-046
Identities = 58/94 (61%), Positives = 71/94 (75%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V M VEQL+VAHN LSG +P +
Sbjct: 30161 MNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPAS 30340
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 30341 ICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRR 30442
Score = 99.6 bits (211), Expect(2) = 3e-024
Identities = 49/85 (57%), Positives = 55/85 (64%)
Frame = -1 / -3
Query: 255 GGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPTSELKLTS 76
G SPVKKL* V+F S G Q+ +G PD LCAT SCST I T G+GPTS LKLTS
Sbjct: 30405 GASPVKKL*L*VKFSSFGN*QILAGIFPDNILCATLSCSTETISPTLSGNGPTSSLKLTS 30226
Query: 75 KTVTSRSKPTSGGTQESRPLLMGWI 1
TVT ++P S G QE RPL M I
Sbjct: 30225 NTVTFFNRPISDGKQELRPLFMKMI 30151
Score = 62.0 bits (129), Expect(2) = 3e-046
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2 / +2
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DRRNCLP RP QR+P QC AF S+PPV+C
Sbjct: 30419 LPEFDDRRNCLPGRPAQRSPGQCKAFLSRPPVNC 30520
Score = 34.1 bits (68), Expect(2) = 3e-024
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1 / -3
Query: 372 QSTGGCE*NAAHCCGVRCVGRLGRQFLLSPSEGTTR 265
Q TGG + NA HC G G G+QFL S + G +
Sbjct: 30519 QFTGGRDKNALHCPGDL*AGLPGKQFLRSSNSGNLK 30412
>ref|NM_117407.2| Arabidopsis thaliana unknown protein AT4G13340 mRNA, complete cds
Length = 2448
Score = 145 bits (311), Expect(2) = 4e-046
Identities = 58/94 (61%), Positives = 71/94 (75%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V M VEQL+VAHN LSG +P +
Sbjct: 790 MNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPAS 969
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 970 ICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRR 1071
Score = 99.6 bits (211), Expect(2) = 3e-024
Identities = 49/85 (57%), Positives = 55/85 (64%)
Frame = -1 / -2
Query: 255 GGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPTSELKLTS 76
G SPVKKL* V+F S G Q+ +G PD LCAT SCST I T G+GPTS LKLTS
Sbjct: 1034 GASPVKKL*L*VKFSSFGN*QILAGIFPDNILCATLSCSTETISPTLSGNGPTSSLKLTS 855
Query: 75 KTVTSRSKPTSGGTQESRPLLMGWI 1
TVT ++P S G QE RPL M I
Sbjct: 854 NTVTFFNRPISDGKQELRPLFMKMI 780
Score = 62.0 bits (129), Expect(2) = 4e-046
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2 / +1
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DRRNCLP RP QR+P QC AF S+PPV+C
Sbjct: 1048 LPEFDDRRNCLPGRPAQRSPGQCKAFLSRPPVNC 1149
Score = 34.1 bits (68), Expect(2) = 3e-024
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1 / -2
Query: 372 QSTGGCE*NAAHCCGVRCVGRLGRQFLLSPSEGTTR 265
Q TGG + NA HC G G G+QFL S + G +
Sbjct: 1148 QFTGGRDKNALHCPGDL*AGLPGKQFLRSSNSGNLK 1041
>emb|AX506996.1| Sequence 1691 from Patent WO0216655
Length = 2283
Score = 145 bits (311), Expect(2) = 4e-046
Identities = 58/94 (61%), Positives = 71/94 (75%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V M VEQL+VAHN LSG +P +
Sbjct: 790 MNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPAS 969
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 970 ICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRR 1071
Score = 99.6 bits (211), Expect(2) = 3e-024
Identities = 49/85 (57%), Positives = 55/85 (64%)
Frame = -1 / -2
Query: 255 GGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPTSELKLTS 76
G SPVKKL* V+F S G Q+ +G PD LCAT SCST I T G+GPTS LKLTS
Sbjct: 1034 GASPVKKL*L*VKFSSFGN*QILAGIFPDNILCATLSCSTETISPTLSGNGPTSSLKLTS 855
Query: 75 KTVTSRSKPTSGGTQESRPLLMGWI 1
TVT ++P S G QE RPL M I
Sbjct: 854 NTVTFFNRPISDGKQELRPLFMKMI 780
Score = 62.0 bits (129), Expect(2) = 4e-046
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2 / +1
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DRRNCLP RP QR+P QC AF S+PPV+C
Sbjct: 1048 LPEFDDRRNCLPGRPAQRSPGQCKAFLSRPPVNC 1149
Score = 34.1 bits (68), Expect(2) = 3e-024
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1 / -2
Query: 372 QSTGGCE*NAAHCCGVRCVGRLGRQFLLSPSEGTTR 265
Q TGG + NA HC G G G+QFL S + G +
Sbjct: 1148 QFTGGRDKNALHCPGDL*AGLPGKQFLRSSNSGNLK 1041
>dbj|AP002048.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXP5
Length = 35471
Score = 149 bits (319), Expect(2) = 7e-046
Identities = 59/94 (62%), Positives = 73/94 (77%)
Frame = +2 / -2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V GM +VEQL+VAHN LSG +P +
Sbjct: 28672 MNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPAS 28493
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 28492 ICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRR 28391
Score = 57.4 bits (119), Expect(2) = 7e-046
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +2 / -2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DRRNCLP RP QR+ +QC+AF S+P VDC
Sbjct: 28399 DRRNCLPGRPAQRSSRQCSAFLSRPSVDC 28313
>ref|NM_113355.1| Arabidopsis thaliana protein binding AT3G24480 mRNA, complete cds
Length = 1485
Score = 149 bits (319), Expect(2) = 7e-046
Identities = 59/94 (62%), Positives = 73/94 (77%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V GM +VEQL+VAHN LSG +P +
Sbjct: 814 MNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPAS 993
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 994 ICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRR 1095
Score = 57.4 bits (119), Expect(2) = 7e-046
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DRRNCLP RP QR+ +QC+AF S+P VDC
Sbjct: 1087 DRRNCLPGRPAQRSSRQCSAFLSRPSVDC 1173
>emb|CR395125.1| Arabidopsis thaliana T-DNA flanking sequence GK-017A08-026160,
genomic survey sequence
Length = 530
Score = 149 bits (319), Expect(2) = 7e-046
Identities = 59/94 (62%), Positives = 73/94 (77%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V GM +VEQL+VAHN LSG +P +
Sbjct: 368 MNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPAS 189
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 188 ICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRR 87
Score = 57.4 bits (119), Expect(2) = 7e-046
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +2 / -1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DRRNCLP RP QR+ +QC+AF S+P VDC
Sbjct: 95 DRRNCLPGRPAQRSSRQCSAFLSRPSVDC 9
>emb|CR395124.1| Arabidopsis thaliana T-DNA flanking sequence GK-017A08-026159,
genomic survey sequence
Length = 509
Score = 149 bits (319), Expect(2) = 1e-044
Identities = 59/94 (62%), Positives = 73/94 (77%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V GM +VEQL+VAHN LSG +P +
Sbjct: 357 MNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPAS 178
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 177 ICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRR 76
Score = 53.3 bits (110), Expect(2) = 1e-044
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2 / -3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVD 370
DRRNCLP RP QR+ +QC+AF S+P VD
Sbjct: 84 DRRNCLPGRPAQRSSRQCSAFLSRPSVD 1
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
Length = 199075
Score = 137 bits (294), Expect(2) = 2e-044
Identities = 52/84 (61%), Positives = 63/84 (75%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+ NG +SC+P ++G L+ VTVFD SFN LVG LP + GM +EQL+VAHNR SG +P
Sbjct: 55805 MENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPAT 55626
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LPRL+N T SYNFFTGEPP C
Sbjct: 55625 ICQLPRLENFTFSYNFFTGEPPVC 55554
Score = 88.1 bits (186), Expect(2) = 8e-024
Identities = 42/87 (48%), Positives = 51/87 (58%)
Frame = -1 / +1
Query: 261 QDGGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPTSELKL 82
Q GGSPVKKL* V+F + G Q+ +G P+ LCAT +CS IP G+ PTS LKL
Sbjct: 55555 QTGGSPVKKL*LKVKFSNLGN*QIVAGILPENLLCATFNCSIETIPPILAGNDPTSSLKL 55734
Query: 81 TSKTVTSRSKPTSGGTQESRPLLMGWI 1
S TVT ++P G QE P M I
Sbjct: 55735 KSNTVTFFNRPICDGKQELNPFSMKMI 55815
Score = 63.8 bits (133), Expect(2) = 2e-044
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +2 / -3
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DRRNCLP RP QR+P QCAAF S PPVDC
Sbjct: 55547 LPGFDDRRNCLPARPAQRSPGQCAAFSSLPPVDC 55446
Score = 44.1 bits (90), Expect(2) = 8e-024
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -1 / +1
Query: 372 QSTGGCE*NAAHCCGVRCVGRLGRQFLLSPSEGTTRAQDG 253
QSTGG E AAHC G C G G+QF S + G R G
Sbjct: 55447 QSTGGREEKAAHCPGDLCAGLAGKQFRRSSNPGNPRQTGG 55566
>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project)
Length = 94301
Score = 137 bits (294), Expect(2) = 2e-044
Identities = 52/84 (61%), Positives = 63/84 (75%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+ NG +SC+P ++G L+ VTVFD SFN LVG LP + GM +EQL+VAHNR SG +P
Sbjct: 36524 MENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPAT 36345
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LPRL+N T SYNFFTGEPP C
Sbjct: 36344 ICQLPRLENFTFSYNFFTGEPPVC 36273
Score = 88.1 bits (186), Expect(2) = 8e-024
Identities = 42/87 (48%), Positives = 51/87 (58%)
Frame = -1 / +1
Query: 261 QDGGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPTSELKL 82
Q GGSPVKKL* V+F + G Q+ +G P+ LCAT +CS IP G+ PTS LKL
Sbjct: 36274 QTGGSPVKKL*LKVKFSNLGN*QIVAGILPENLLCATFNCSIETIPPILAGNDPTSSLKL 36453
Query: 81 TSKTVTSRSKPTSGGTQESRPLLMGWI 1
S TVT ++P G QE P M I
Sbjct: 36454 KSNTVTFFNRPICDGKQELNPFSMKMI 36534
Score = 63.8 bits (133), Expect(2) = 2e-044
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +2 / -1
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DRRNCLP RP QR+P QCAAF S PPVDC
Sbjct: 36266 LPGFDDRRNCLPARPAQRSPGQCAAFSSLPPVDC 36165
Score = 44.1 bits (90), Expect(2) = 8e-024
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -1 / +1
Query: 372 QSTGGCE*NAAHCCGVRCVGRLGRQFLLSPSEGTTRAQDG 253
QSTGG E AAHC G C G G+QF S + G R G
Sbjct: 36166 QSTGGREEKAAHCPGDLCAGLAGKQFRRSSNPGNPRQTGG 36285
>ref|NM_117983.2| Arabidopsis thaliana protein binding AT4G18670 mRNA, complete cds
Length = 2976
Score = 137 bits (294), Expect(2) = 2e-044
Identities = 52/84 (61%), Positives = 63/84 (75%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+ NG +SC+P ++G L+ VTVFD SFN LVG LP + GM +EQL+VAHNR SG +P
Sbjct: 826 MENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPAT 1005
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LPRL+N T SYNFFTGEPP C
Sbjct: 1006 ICQLPRLENFTFSYNFFTGEPPVC 1077
Score = 88.1 bits (186), Expect(2) = 9e-024
Identities = 42/87 (48%), Positives = 51/87 (58%)
Frame = -1 / -2
Query: 261 QDGGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPTSELKL 82
Q GGSPVKKL* V+F + G Q+ +G P+ LCAT +CS IP G+ PTS LKL
Sbjct: 1076 QTGGSPVKKL*LKVKFSNLGN*QIVAGILPENLLCATFNCSIETIPPILAGNDPTSSLKL 897
Query: 81 TSKTVTSRSKPTSGGTQESRPLLMGWI 1
S TVT ++P G QE P M I
Sbjct: 896 KSNTVTFFNRPICDGKQELNPFSMKMI 816
Score = 63.8 bits (133), Expect(2) = 2e-044
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +2 / +1
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DRRNCLP RP QR+P QCAAF S PPVDC
Sbjct: 1084 LPGFDDRRNCLPARPAQRSPGQCAAFSSLPPVDC 1185
Score = 44.1 bits (90), Expect(2) = 9e-024
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -1 / -2
Query: 372 QSTGGCE*NAAHCCGVRCVGRLGRQFLLSPSEGTTRAQDG 253
QSTGG E AAHC G C G G+QF S + G R G
Sbjct: 1184 QSTGGREEKAAHCPGDLCAGLAGKQFRRSSNPGNPRQTGG 1065
>dbj|AB022223.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MWI23
Length = 77273
Score = 136 bits (291), Expect(2) = 1e-037
Identities = 51/93 (54%), Positives = 71/93 (76%)
Frame = +2 / -2
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+ E+GLL ++TVFDVS+N+LVG LP+ + M+ +EQL++AHN+ SG +PE+I
Sbjct: 52936 NSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESI 52757
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
C LPRL+N T SYNFF+GEPP+C R+ D R
Sbjct: 52756 CRLPRLENFTYSYNFFSGEPPACLRLQEFDDRR 52658
Score = 42.3 bits (86), Expect(2) = 1e-037
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2 / -2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
DRRNCLP+RP QR+ +C +F S P
Sbjct: 52666 DRRNCLPSRPMQRSLAECKSFSSYP 52592
>ref|NM_113179.3| Arabidopsis thaliana protein binding / structural constituent of cell
wall AT3G22800 mRNA, complete cds
Length = 1669
Score = 136 bits (291), Expect(2) = 1e-037
Identities = 51/93 (54%), Positives = 71/93 (76%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+ E+GLL ++TVFDVS+N+LVG LP+ + M+ +EQL++AHN+ SG +PE+I
Sbjct: 835 NSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESI 1014
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
C LPRL+N T SYNFF+GEPP+C R+ D R
Sbjct: 1015 CRLPRLENFTYSYNFFSGEPPACLRLQEFDDRR 1113
Score = 42.3 bits (86), Expect(2) = 1e-037
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
DRRNCLP+RP QR+ +C +F S P
Sbjct: 1105 DRRNCLPSRPMQRSLAECKSFSSYP 1179
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 149 bits (319), Expect = 1e-034
Identities = 59/94 (62%), Positives = 73/94 (77%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V GM +VEQL+VAHN LSG +P +
Sbjct: 8843817 MNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPAS 8843638
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 8843637 ICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRR 8843536
Score = 136 bits (291), Expect = 8e-031
Identities = 51/93 (54%), Positives = 71/93 (76%)
Frame = +2 / -1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+ E+GLL ++TVFDVS+N+LVG LP+ + M+ +EQL++AHN+ SG +PE+I
Sbjct: 8013861 NSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESI 8013682
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
C LPRL+N T SYNFF+GEPP+C R+ D R
Sbjct: 8013681 CRLPRLENFTYSYNFFSGEPPACLRLQEFDDRR 8013583
Score = 111 bits (237), Expect = 2e-023
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
I N L C+P E+G L VTVFD S N VG LP ++G+ VEQ+D ++N+ +G V +
Sbjct: 6534019 IGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDN 6533840
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LP+L N T SYNFF GE SC
Sbjct: 6533839 ICKLPKLSNFTFSYNFFNGEAQSC 6533768
Score = 105 bits (225), Expect = 1e-021
Identities = 39/88 (44%), Positives = 56/88 (63%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P ++G L TVFDV N L GP+P ++K+EQL++A N G +PE
Sbjct: 6664522 LNNKLTGCLPYQIGNLNRATVFDVELNQLTGPIPYSFGCLKKMEQLNLARNNFYGTIPEI 6664343
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C L LKNL++SYN+FT P C ++
Sbjct: 6664342 VCELSALKNLSLSYNYFTQVGPKCRTLI 6664259
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 149 bits (319), Expect = 1e-034
Identities = 59/94 (62%), Positives = 73/94 (77%)
Frame = +2 / -2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V GM +VEQL+VAHN LSG +P +
Sbjct: 8901832 MNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPAS 8901653
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 8901652 ICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRR 8901551
Score = 136 bits (291), Expect = 8e-031
Identities = 51/93 (54%), Positives = 71/93 (76%)
Frame = +2 / -1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+ E+GLL ++TVFDVS+N+LVG LP+ + M+ +EQL++AHN+ SG +PE+I
Sbjct: 8063729 NSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESI 8063550
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
C LPRL+N T SYNFF+GEPP+C R+ D R
Sbjct: 8063549 CRLPRLENFTYSYNFFSGEPPACLRLQEFDDRR 8063451
Score = 111 bits (237), Expect = 2e-023
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
I N L C+P E+G L VTVFD S N VG LP ++G+ VEQ+D ++N+ +G V +
Sbjct: 6561243 IGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDN 6561064
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LP+L N T SYNFF GE SC
Sbjct: 6561063 ICKLPKLSNFTFSYNFFNGEAQSC 6560992
Score = 105 bits (225), Expect = 1e-021
Identities = 39/88 (44%), Positives = 56/88 (63%)
Frame = +2 / -2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P ++G L TVFDV N L GP+P ++K+EQL++A N G +PE
Sbjct: 6696907 LNNKLTGCLPYQIGNLNRATVFDVELNQLTGPIPYSFGCLKKMEQLNLARNNFYGTIPEI 6696728
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C L LKNL++SYN+FT P C ++
Sbjct: 6696727 VCELSALKNLSLSYNYFTQVGPKCRTLI 6696644
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 145 bits (311), Expect = 1e-033
Identities = 58/94 (61%), Positives = 71/94 (75%)
Frame = +2 / +3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNGL+SC+P ++G L+ VTVFDVSFN LVGPLP+ V M VEQL+VAHN LSG +P +
Sbjct: 7759395 MNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPAS 7759574
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
IC LP+L+N T SYNFFTGE P C R+ D R
Sbjct: 7759575 ICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRR 7759676
Score = 137 bits (294), Expect = 3e-031
Identities = 52/84 (61%), Positives = 63/84 (75%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+ NG +SC+P ++G L+ VTVFD SFN LVG LP + GM +EQL+VAHNR SG +P
Sbjct: 10277677 MENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPAT 10277498
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LPRL+N T SYNFFTGEPP C
Sbjct: 10277497 ICQLPRLENFTFSYNFFTGEPPVC 10277426
Score = 112 bits (239), Expect = 1e-023
Identities = 42/84 (50%), Positives = 60/84 (71%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
IN+ L C+PPEVG L ++ V D+S+NSLVGP+P +AG+ +EQL++ HN +G VP
Sbjct: 14040217 INSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFTGTVPLG 14040038
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
+C LP L N+T+SYN+F+ E C
Sbjct: 14040037 VCVLPSLLNVTVSYNYFSEEEGIC 14039966
Score = 107 bits (229), Expect = 3e-022
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +2 / -2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
++N L C P E+G L VTVFD S NS +G LP G+ VE++D++ N+L+G VP
Sbjct: 16281050 MDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHN 16280871
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LP L NLT SYN+F+G+ SC
Sbjct: 16280870 ICQLPNLVNLTYSYNYFSGQGGSC 16280799
Score = 104 bits (222), Expect = 3e-021
Identities = 37/85 (43%), Positives = 60/85 (70%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VG+ E+ VFDVS+N+L+G +P ++ + +E L++AHN+ SG VP+
Sbjct: 14419624 LNNQLTGCIPESVGMFSEIEVFDVSYNALMGHVPDTISCLSAIEILNLAHNKFSGEVPDL 14419803
Query: 191 ICALPRLKNLTISYNFFTGEPPSCA 265
+C+L L NLT+++NFF+G C+
Sbjct: 14419804 VCSLRNLINLTVAFNFFSGFSSECS 14419878
>gb|BX841161.1|BX841161 BX841161 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB18ZG09 5PRIM, mRNA sequence
Length = 1005
Score = 124 bits (265), Expect(2) = 2e-032
Identities = 46/82 (56%), Positives = 65/82 (79%)
Frame = +2 / +3
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+ E+GLL ++TVFDVS N+LVG LP+ + M+ +EQL++AHN+ SG +P++I
Sbjct: 669 NSQLTGCLNREIGLLNQLTVFDVSNNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPDSI 848
Query: 194 CALPRLKNLTISYNFFTGEPPS 259
C LPRL+N T SYNFF+GEPP+
Sbjct: 849 CRLPRLENFTYSYNFFSGEPPA 914
Score = 37.3 bits (75), Expect(2) = 2e-032
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAF 349
DRRNCLP+RP QR +C F
Sbjct: 940 DRRNCLPSRPLQRALAECKPF 1002
>emb|BX824256.1|CNS0A7QT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH34ZA06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1579
Score = 109 bits (233), Expect(2) = 5e-028
Identities = 41/83 (49%), Positives = 61/83 (73%)
Frame = +2 / +2
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+ E+GL ++TVFDVS N+LVG LP+ + ++ +EQ ++AH + S +P++I
Sbjct: 797 NSQLTGCLNREIGLRNQLTVFDVSHNNLVGSLPETIGDIKSLEQ*NIAHKKFSRYIPQSI 976
Query: 194 CALPRLKNLTISYNFFTGEPPSC 262
C LPRL+NLT SYNFF+ PP+C
Sbjct: 977 CRLPRLENLT*SYNFFSAPPPAC 1045
Score = 36.8 bits (74), Expect(2) = 5e-028
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2 / +2
Query: 239 FTGEPPSCARVVPSDGDRRNCLPNRPTQRTPQQCAAFYSQP 361
F PP + DRRNCLP R Q QC +F S P
Sbjct: 1019 FFSAPPPACLTLQQFHDRRNCLP*RQMQWYLAQCKSFSSYP 1141
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80
Length = 192861
Score = 107 bits (229), Expect(2) = 7e-028
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +2 / -2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
++N L C P E+G L VTVFD S NS +G LP G+ VE++D++ N+L+G VP
Sbjct: 114602 MDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHN 114423
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LP L NLT SYN+F+G+ SC
Sbjct: 114422 ICQLPNLVNLTYSYNYFSGQGGSC 114351
Score = 38.2 bits (77), Expect(2) = 7e-028
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2 / -2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
D RNCL +RP QR+ Q+CA ++P
Sbjct: 114314 DTRNCLASRPEQRSAQECAVVINRP 114240
>emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17I5 (ESSA project)
Length = 86748
Score = 107 bits (229), Expect(2) = 7e-028
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
++N L C P E+G L VTVFD S NS +G LP G+ VE++D++ N+L+G VP
Sbjct: 65578 MDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHN 65399
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LP L NLT SYN+F+G+ SC
Sbjct: 65398 ICQLPNLVNLTYSYNYFSGQGGSC 65327
Score = 38.2 bits (77), Expect(2) = 7e-028
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2 / -3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
D RNCL +RP QR+ Q+CA ++P
Sbjct: 65290 DTRNCLASRPEQRSAQECAVVINRP 65216
>ref|NM_119558.1| Arabidopsis thaliana protein binding AT4G33970 mRNA, complete cds
Length = 2100
Score = 107 bits (229), Expect(2) = 7e-028
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
++N L C P E+G L VTVFD S NS +G LP G+ VE++D++ N+L+G VP
Sbjct: 850 MDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHN 1029
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LP L NLT SYN+F+G+ SC
Sbjct: 1030 ICQLPNLVNLTYSYNYFSGQGGSC 1101
Score = 38.2 bits (77), Expect(2) = 7e-028
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
D RNCL +RP QR+ Q+CA ++P
Sbjct: 1138 DTRNCLASRPEQRSAQECAVVINRP 1212
>gb|AC006438.4| Arabidopsis thaliana chromosome 2 clone F19G14 map mi398, complete
sequence
Length = 91106
Score = 104 bits (221), Expect(2) = 9e-028
Identities = 39/83 (46%), Positives = 53/83 (63%)
Frame = +2 / +2
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
+N L C P E+G L V VFD S NS G LP G+ +E+ D++ N+L+G +PE I
Sbjct: 36974 DNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPENI 37153
Query: 194 CALPRLKNLTISYNFFTGEPPSC 262
C LP+L NLT +YN+F G+ SC
Sbjct: 37154 CKLPKLVNLTYAYNYFNGQGDSC 37222
Score = 41.4 bits (84), Expect(2) = 9e-028
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
D RNCLP+RP QR+ ++CA S+P
Sbjct: 37256 DTRNCLPDRPKQRSAKECAVVISRP 37330
>ref|NM_127148.1| Arabidopsis thaliana structural constituent of cell wall AT2G15880
mRNA, complete cds
Length = 2184
Score = 104 bits (221), Expect(2) = 1e-027
Identities = 39/83 (46%), Positives = 53/83 (63%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
+N L C P E+G L V VFD S NS G LP G+ +E+ D++ N+L+G +PE I
Sbjct: 775 DNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPENI 954
Query: 194 CALPRLKNLTISYNFFTGEPPSC 262
C LP+L NLT +YN+F G+ SC
Sbjct: 955 CKLPKLVNLTYAYNYFNGQGDSC 1023
Score = 41.4 bits (84), Expect(2) = 1e-027
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
D RNCLP+RP QR+ ++CA S+P
Sbjct: 1057 DTRNCLPDRPKQRSAKECAVVISRP 1131
>dbj|AP000735.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K13E13
Length = 79186
Score = 111 bits (237), Expect(2) = 1e-027
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
I N L C+P E+G L VTVFD S N VG LP ++G+ VEQ+D ++N+ +G V +
Sbjct: 39869 IGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDN 39690
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LP+L N T SYNFF GE SC
Sbjct: 39689 ICKLPKLSNFTFSYNFFNGEAQSC 39618
Score = 33.6 bits (67), Expect(2) = 1e-027
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2 / -3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
D NCL NRP Q++ ++C S+P
Sbjct: 39584 DTSNCLQNRPNQKSAKECLPVVSRP 39510
>ref|NM_112788.2| Arabidopsis thaliana protein binding / structural constituent of cell
wall AT3G19020 mRNA, complete cds
Length = 3147
Score = 111 bits (237), Expect(2) = 1e-027
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
I N L C+P E+G L VTVFD S N VG LP ++G+ VEQ+D ++N+ +G V +
Sbjct: 883 IGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDN 1062
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LP+L N T SYNFF GE SC
Sbjct: 1063 ICKLPKLSNFTFSYNFFNGEAQSC 1134
Score = 33.6 bits (67), Expect(2) = 1e-027
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
D NCL NRP Q++ ++C S+P
Sbjct: 1168 DTSNCLQNRPNQKSAKECLPVVSRP 1242
>gb|AY091043.1| Arabidopsis thaliana unknown protein (At3g19020) mRNA, partial cds
Length = 2193
Score = 111 bits (237), Expect(2) = 1e-027
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
I N L C+P E+G L VTVFD S N VG LP ++G+ VEQ+D ++N+ +G V +
Sbjct: 865 IGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDN 1044
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
IC LP+L N T SYNFF GE SC
Sbjct: 1045 ICKLPKLSNFTFSYNFFNGEAQSC 1116
Score = 33.6 bits (67), Expect(2) = 1e-027
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
D NCL NRP Q++ ++C S+P
Sbjct: 1150 DTSNCLQNRPNQKSAKECLPVVSRP 1224
>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete
sequence
Length = 125021
Score = 108 bits (231), Expect(2) = 3e-027
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +2 / +1
Query: 17 NGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAIC 196
N L C P E+GLL VTVFD S N VG LP ++G+ VEQLD++HN+L+G V + C
Sbjct: 24577 NNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFC 24756
Query: 197 ALPRLKNLTISYNFFTGEPPSC 262
LP L + SYNFF GE SC
Sbjct: 24757 KLPNLDSFKFSYNFFNGEAESC 24822
Score = 35.0 bits (70), Expect(2) = 3e-027
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
D NCL NRP+Q+ +QC S+P
Sbjct: 24856 DTNNCLQNRPSQKPAKQCLPVVSRP 24930
>ref|NM_103837.1| Arabidopsis thaliana structural constituent of cell wall AT1G49490
mRNA, complete cds
Length = 2544
Score = 108 bits (231), Expect(2) = 3e-027
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +2 / +1
Query: 17 NGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAIC 196
N L C P E+GLL VTVFD S N VG LP ++G+ VEQLD++HN+L+G V + C
Sbjct: 775 NNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFC 954
Query: 197 ALPRLKNLTISYNFFTGEPPSC 262
LP L + SYNFF GE SC
Sbjct: 955 KLPNLDSFKFSYNFFNGEAESC 1020
Score = 35.0 bits (70), Expect(2) = 3e-027
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQP 361
D NCL NRP+Q+ +QC S+P
Sbjct: 1054 DTNNCLQNRPSQKPAKQCLPVVSRP 1128
>emb|AX507698.1| Sequence 2393 from Patent WO0216655
Length = 2361
Score = 121 bits (259), Expect = 2e-026
Identities = 44/87 (50%), Positives = 62/87 (71%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L+ VTVFD+SFN L GPLP + M+ +EQL+VA+NR +G +P +I
Sbjct: 757 NDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSI 936
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVV 274
C L L+N T S NFFTG+ P C ++
Sbjct: 937 CQLSNLENFTYSSNFFTGDAPRCVALL 1017
>gb|AC005698.1|AC005698 Genomic sequence for Arabidopsis thaliana BAC T3P18 from Chromosome
1, complete sequence
Length = 97054
Score = 121 bits (259), Expect = 2e-026
Identities = 44/87 (50%), Positives = 62/87 (71%)
Frame = +2 / +3
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L+ VTVFD+SFN L GPLP + M+ +EQL+VA+NR +G +P +I
Sbjct: 4677 NDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSI 4856
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVV 274
C L L+N T S NFFTG+ P C ++
Sbjct: 4857 CQLSNLENFTYSSNFFTGDAPRCVALL 4937
>gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis thaliana BAC F24O1 from chromosome I,
complete sequence
Length = 86372
Score = 121 bits (259), Expect = 2e-026
Identities = 44/87 (50%), Positives = 62/87 (71%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L+ VTVFD+SFN L GPLP + M+ +EQL+VA+NR +G +P +I
Sbjct: 80086 NDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSI 80265
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVV 274
C L L+N T S NFFTG+ P C ++
Sbjct: 80266 CQLSNLENFTYSSNFFTGDAPRCVALL 80346
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 121 bits (259), Expect = 2e-026
Identities = 44/87 (50%), Positives = 62/87 (71%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L+ VTVFD+SFN L GPLP + M+ +EQL+VA+NR +G +P +I
Sbjct: 7355005 NDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSI 7355184
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVV 274
C L L+N T S NFFTG+ P C ++
Sbjct: 7355185 CQLSNLENFTYSSNFFTGDAPRCVALL 7355265
Score = 108 bits (231), Expect = 1e-022
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +2 / -1
Query: 17 NGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAIC 196
N L C P E+GLL VTVFD S N VG LP ++G+ VEQLD++HN+L+G V + C
Sbjct: 2678594 NNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFC 2678415
Query: 197 ALPRLKNLTISYNFFTGEPPSC 262
LP L + SYNFF GE SC
Sbjct: 2678414 KLPNLDSFKFSYNFFNGEAESC 2678349
>ref|NM_104924.1| Arabidopsis thaliana LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2);
structural constituent of cell wall AT1G62440 (LRX2)
mRNA, complete cds
Length = 2481
Score = 121 bits (259), Expect = 2e-026
Identities = 44/87 (50%), Positives = 62/87 (71%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L+ VTVFD+SFN L GPLP + M+ +EQL+VA+NR +G +P +I
Sbjct: 877 NDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSI 1056
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVV 274
C L L+N T S NFFTG+ P C ++
Sbjct: 1057 CQLSNLENFTYSSNFFTGDAPRCVALL 1137
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 121 bits (259), Expect = 2e-026
Identities = 44/87 (50%), Positives = 62/87 (71%)
Frame = +2 / +2
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L+ VTVFD+SFN L GPLP + M+ +EQL+VA+NR +G +P +I
Sbjct: 23117354 NDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSI 23117533
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVV 274
C L L+N T S NFFTG+ P C ++
Sbjct: 23117534 CQLSNLENFTYSSNFFTGDAPRCVALL 23117614
Score = 113 bits (241), Expect = 6e-024
Identities = 42/90 (46%), Positives = 62/90 (68%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L++VTVFD++ N L GPLP V M+ +E+L VA+N +G +P +I
Sbjct: 4070908 NDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSI 4071087
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSD 283
C L L+N T S N+F+G PP CA + +D
Sbjct: 4071088 CQLSNLENFTYSSNYFSGRPPICAASLLAD 4071177
Score = 108 bits (231), Expect = 1e-022
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +2 / -1
Query: 17 NGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAIC 196
N L C P E+GLL VTVFD S N VG LP ++G+ VEQLD++HN+L+G V + C
Sbjct: 18323000 NNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFC 18322821
Query: 197 ALPRLKNLTISYNFFTGEPPSC 262
LP L + SYNFF GE SC
Sbjct: 18322820 KLPNLDSFKFSYNFFNGEAESC 18322755
>gb|BT004135.1| Arabidopsis thaliana clone RAFL15-20-F01 (R20712) putative disease
resistance protein (At2g19780) mRNA, complete cds
Length = 1440
Score = 118 bits (253), Expect = 1e-025
Identities = 45/112 (40%), Positives = 70/112 (62%)
Frame = +2 / +3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL ++ VFDVSFNSL+G +P ++ + ++E L++ HN+ SG +P+
Sbjct: 816 LNNQLTGCIPESVGLFSDIEVFDVSFNSLMGHVPDTISCLSEIEVLNLGHNKFSGDLPDL 995
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDRRNCLPNRPTQRTPQQCAA 346
+C L L NLT+S+NFF+G C+ + NC+P + QR C+A
Sbjct: 996 VCTLRNLINLTVSFNFFSGFSSQCSSLSVGFDFTGNCIPGKGYQRPQPDCSA 1151
>gb|BT005020.1| Arabidopsis thaliana clone U20712 putative disease resistance protein
(At2g19780) mRNA, complete cds
Length = 1240
Score = 118 bits (253), Expect = 1e-025
Identities = 45/112 (40%), Positives = 70/112 (62%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL ++ VFDVSFNSL+G +P ++ + ++E L++ HN+ SG +P+
Sbjct: 778 LNNQLTGCIPESVGLFSDIEVFDVSFNSLMGHVPDTISCLSEIEVLNLGHNKFSGDLPDL 957
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDRRNCLPNRPTQRTPQQCAA 346
+C L L NLT+S+NFF+G C+ + NC+P + QR C+A
Sbjct: 958 VCTLRNLINLTVSFNFFSGFSSQCSSLSVGFDFTGNCIPGKGYQRPQPDCSA 1113
>gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete
sequence
Length = 126386
Score = 118 bits (253), Expect = 1e-025
Identities = 45/112 (40%), Positives = 70/112 (62%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL ++ VFDVSFNSL+G +P ++ + ++E L++ HN+ SG +P+
Sbjct: 100133 LNNQLTGCIPESVGLFSDIEVFDVSFNSLMGHVPDTISCLSEIEVLNLGHNKFSGDLPDL 100312
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDRRNCLPNRPTQRTPQQCAA 346
+C L L NLT+S+NFF+G C+ + NC+P + QR C+A
Sbjct: 100313 VCTLRNLINLTVSFNFFSGFSSQCSSLSVGFDFTGNCIPGKGYQRPQPDCSA 100468
>ref|NM_127536.2| Arabidopsis thaliana protein binding AT2G19780 mRNA, complete cds
Length = 1397
Score = 118 bits (253), Expect = 1e-025
Identities = 45/112 (40%), Positives = 70/112 (62%)
Frame = +2 / +3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL ++ VFDVSFNSL+G +P ++ + ++E L++ HN+ SG +P+
Sbjct: 813 LNNQLTGCIPESVGLFSDIEVFDVSFNSLMGHVPDTISCLSEIEVLNLGHNKFSGDLPDL 992
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDRRNCLPNRPTQRTPQQCAA 346
+C L L NLT+S+NFF+G C+ + NC+P + QR C+A
Sbjct: 993 VCTLRNLINLTVSFNFFSGFSSQCSSLSVGFDFTGNCIPGKGYQRPQPDCSA 1148
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 118 bits (253), Expect = 1e-025
Identities = 45/112 (40%), Positives = 70/112 (62%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL ++ VFDVSFNSL+G +P ++ + ++E L++ HN+ SG +P+
Sbjct: 8530344 LNNQLTGCIPESVGLFSDIEVFDVSFNSLMGHVPDTISCLSEIEVLNLGHNKFSGDLPDL 8530165
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSDGDRRNCLPNRPTQRTPQQCAA 346
+C L L NLT+S+NFF+G C+ + NC+P + QR C+A
Sbjct: 8530164 VCTLRNLINLTVSFNFFSGFSSQCSSLSVGFDFTGNCIPGKGYQRPQPDCSA 8530009
Score = 104 bits (221), Expect = 3e-021
Identities = 39/83 (46%), Positives = 53/83 (63%)
Frame = +2 / -3
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
+N L C P E+G L V VFD S NS G LP G+ +E+ D++ N+L+G +PE I
Sbjct: 6926530 DNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPENI 6926351
Query: 194 CALPRLKNLTISYNFFTGEPPSC 262
C LP+L NLT +YN+F G+ SC
Sbjct: 6926350 CKLPKLVNLTYAYNYFNGQGDSC 6926282
>gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence
Length = 123386
Score = 113 bits (241), Expect(2) = 2e-025
Identities = 42/90 (46%), Positives = 62/90 (68%)
Frame = +2 / -1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L++VTVFD++ N L GPLP V M+ +E+L VA+N +G +P +I
Sbjct: 43715 NDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSI 43536
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSD 283
C L L+N T S N+F+G PP CA + +D
Sbjct: 43535 CQLSNLENFTYSSNYFSGRPPICAASLLAD 43446
Score = 24.4 bits (47), Expect(2) = 2e-025
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2 / -1
Query: 296 NCLPNRPTQRTPQQCAAFYSQP 361
NC+ QR+ +QC++ ++P
Sbjct: 43424 NCITGLARQRSDKQCSSLLARP 43359
>gb|AY026364.1| Arabidopsis thaliana leucine-rich repeat/extensin 1 (LRX1) mRNA,
complete cds
Length = 2444
Score = 113 bits (241), Expect(2) = 2e-025
Identities = 42/90 (46%), Positives = 62/90 (68%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L++VTVFD++ N L GPLP V M+ +E+L VA+N +G +P +I
Sbjct: 787 NDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSI 966
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSD 283
C L L+N T S N+F+G PP CA + +D
Sbjct: 967 CQLSNLENFTYSSNYFSGRPPICAASLLAD 1056
Score = 24.4 bits (47), Expect(2) = 2e-025
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2 / +1
Query: 296 NCLPNRPTQRTPQQCAAFYSQP 361
NC+ QR+ +QC++ ++P
Sbjct: 1078 NCITGLARQRSDKQCSSLLARP 1143
>ref|NM_101076.1| Arabidopsis thaliana LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) AT1G12040
(LRX1) mRNA, complete cds
Length = 2444
Score = 113 bits (241), Expect(2) = 2e-025
Identities = 42/90 (46%), Positives = 62/90 (68%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L++VTVFD++ N L GPLP V M+ +E+L VA+N +G +P +I
Sbjct: 787 NDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSI 966
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSD 283
C L L+N T S N+F+G PP CA + +D
Sbjct: 967 CQLSNLENFTYSSNYFSGRPPICAASLLAD 1056
Score = 24.4 bits (47), Expect(2) = 2e-025
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2 / +1
Query: 296 NCLPNRPTQRTPQQCAAFYSQP 361
NC+ QR+ +QC++ ++P
Sbjct: 1078 NCITGLARQRSDKQCSSLLARP 1143
>emb|AX507988.1| Sequence 2683 from Patent WO0216655
Length = 2235
Score = 113 bits (241), Expect(2) = 2e-025
Identities = 42/90 (46%), Positives = 62/90 (68%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L++VTVFD++ N L GPLP V M+ +E+L VA+N +G +P +I
Sbjct: 751 NDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSI 930
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSD 283
C L L+N T S N+F+G PP CA + +D
Sbjct: 931 CQLSNLENFTYSSNYFSGRPPICAASLLAD 1020
Score = 24.4 bits (47), Expect(2) = 2e-025
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2 / +1
Query: 296 NCLPNRPTQRTPQQCAAFYSQP 361
NC+ QR+ +QC++ ++P
Sbjct: 1042 NCITGLARQRSDKQCSSLLARP 1107
>gb|G72110.1|G72110 At-8.5BJ-540 Arabidopsis genomic DNA (B. Jordan) Arabidopsis
thaliana STS genomic, sequence tagged site
Length = 897
Score = 113 bits (241), Expect(2) = 2e-025
Identities = 42/90 (46%), Positives = 62/90 (68%)
Frame = +2 / +2
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L++VTVFD++ N L GPLP V M+ +E+L VA+N +G +P +I
Sbjct: 437 NDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSI 616
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSD 283
C L L+N T S N+F+G PP CA + +D
Sbjct: 617 CQLSNLENFTYSSNYFSGRPPICAASLLAD 706
Score = 24.4 bits (47), Expect(2) = 2e-025
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2 / +2
Query: 296 NCLPNRPTQRTPQQCAAFYSQP 361
NC+ QR+ +QC++ ++P
Sbjct: 728 NCITGLARQRSDKQCSSLLARP 793
>dbj|AB025624.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLD14
Length = 83097
Score = 105 bits (225), Expect(2) = 2e-024
Identities = 39/88 (44%), Positives = 56/88 (63%)
Frame = +2 / -2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P ++G L TVFDV N L GP+P ++K+EQL++A N G +PE
Sbjct: 10127 LNNKLTGCLPYQIGNLNRATVFDVELNQLTGPIPYSFGCLKKMEQLNLARNNFYGTIPEI 9948
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C L LKNL++SYN+FT P C ++
Sbjct: 9947 VCELSALKNLSLSYNYFTQVGPKCRTLI 9864
Score = 28.1 bits (55), Expect(2) = 2e-024
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2 / -2
Query: 296 NCLPNRPTQRTPQQCAAFY 352
NC+ + QRTP +CA F+
Sbjct: 9836 NCILDLTNQRTPWECAKFF 9780
>ref|NM_112819.1| Arabidopsis thaliana protein binding AT3G19320 mRNA, complete cds
Length = 1482
Score = 105 bits (225), Expect(2) = 2e-024
Identities = 39/88 (44%), Positives = 56/88 (63%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P ++G L TVFDV N L GP+P ++K+EQL++A N G +PE
Sbjct: 976 LNNKLTGCLPYQIGNLNRATVFDVELNQLTGPIPYSFGCLKKMEQLNLARNNFYGTIPEI 1155
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C L LKNL++SYN+FT P C ++
Sbjct: 1156 VCELSALKNLSLSYNYFTQVGPKCRTLI 1239
Score = 28.1 bits (55), Expect(2) = 2e-024
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2 / +1
Query: 296 NCLPNRPTQRTPQQCAAFY 352
NC+ + QRTP +CA F+
Sbjct: 1267 NCILDLTNQRTPWECAKFF 1323
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 113 bits (241), Expect = 6e-024
Identities = 42/90 (46%), Positives = 62/90 (68%)
Frame = +2 / +2
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L++VTVFD++ N L GPLP V M+ +E+L VA+N +G +P +I
Sbjct: 4070729 NDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSI 4070908
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSD 283
C L L+N T S N+F+G PP CA + +D
Sbjct: 4070909 CQLSNLENFTYSSNYFSGRPPICAASLLAD 4070998
>gb|AY096640.1| Arabidopsis thaliana At4g28370 mRNA sequence
Length = 2333
Score = 112 bits (239), Expect = 1e-023
Identities = 42/84 (50%), Positives = 60/84 (71%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
IN+ L C+PPEVG L ++ V D+S+NSLVGP+P +AG+ +EQL++ HN +G VP
Sbjct: 1202 INSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFTGTVPLG 1023
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
+C LP L N+T+SYN+F+ E C
Sbjct: 1022 VCVLPSLLNVTVSYNYFSEEEGIC 951
>emb|CR379193.1| Arabidopsis thaliana transposon insertion STS GT_3.108284, sequence
tagged site
Length = 271
Score = 112 bits (239), Expect = 1e-023
Identities = 41/84 (48%), Positives = 59/84 (70%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ L C+PP++G L++VTVFD++ N L GPLP V M+ +E+L VA+N +G +P +I
Sbjct: 7 NDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSI 186
Query: 194 CALPRLKNLTISYNFFTGEPPSCA 265
C L L+N T S N+F+G PP CA
Sbjct: 187 CQLSNLENFTYSSNYFSGRPPICA 258
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 791,731,016
Number of Sequences: 1013581
Number of extensions: 8904955
Number of successful extensions: 99038
Number of sequences better than 1.0e-020: 82
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 39310100265
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)