TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY117132.1| Arabidopsis thaliana core alpha 1,3-fucosylt... 217 1e-055
emb|AJ404860.1|ATH404860 Arabidopsis thaliana mRNA for alph... 215 4e-055
emb|AJ345084.1|ATH345084 Arabidopsis thaliana mRNA for core... 215 4e-055
ref|NM_112815.2| Arabidopsis thaliana FUT11; 4-galactosyl-N... 215 4e-055
gb|AY302219.1| Arabidopsis thaliana alpha 1,3 fucosyltransf... 210 2e-053
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 131 1e-050
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 131 1e-050
dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosom... 131 1e-050
ref|NM_103858.2| Arabidopsis thaliana FUT12; fucosyltransfe... 123 5e-050
gb|AY054522.1| Arabidopsis thaliana Putative fucosyltransfe... 123 5e-050
emb|AJ404861.2|ATH404861 Arabidopsis thaliana mRNA for trun... 123 5e-050
gb|BT002570.1| Arabidopsis thaliana Putative fucosyltransfe... 123 5e-050
gb|AY184990.1| Arabidopsis thaliana core alpha 1, 3-fucosyl... 123 5e-050
gb|AY184991.1| Arabidopsis thaliana alpha 1, 3-fucosyltrans... 123 5e-050
emb|AJ345085.1|ATH345085 Arabidopsis thaliana mRNA for core... 123 5e-050
emb|AL093853.1|CNS00WOV Arabidopsis thaliana genome survey ... 131 4e-042
gb|B67847.1|B67847 T24K12TR TAMU Arabidopsis thaliana genom... 131 6e-042
gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BA... 96 2e-036
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 96 2e-034
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 96 5e-034
gb|BX835636.1|BX835636 BX835636 Arabidopsis thaliana Adult ... 117 2e-025
gb|CK120486.1|CK120486 218i09.p1 AtM1 Arabidopsis thaliana ... 96 4e-019
gb|BP611430.1|BP611430 BP611430 RAFL16 Arabidopsis thaliana... 73 6e-012
gb|BP671647.1|BP671647 BP671647 RAFL21 Arabidopsis thaliana... 66 7e-010
gb|AV792413.1|AV792413 AV792413 RAFL7 Arabidopsis thaliana ... 60 3e-008
gb|B98368.1|B98368 T24C14TFB TAMU Arabidopsis thaliana geno... 57 4e-007
gb|AV792426.1|AV792426 AV792426 RAFL7 Arabidopsis thaliana ... 40 0.035
emb|CR398045.1| Arabidopsis thaliana T-DNA flanking sequenc... 38 0.12
emb|CR398044.1| Arabidopsis thaliana T-DNA flanking sequenc... 37 0.32
gb|Z26752.1|Z26752 ATTS1833 AC16H Arabidopsis thaliana cDNA... 28 1.5
gb|AV563748.1|AV563748 AV563748 Arabidopsis thaliana green ... 28 1.7
gb|AV536591.1|AV536591 AV536591 Arabidopsis thaliana liquid... 28 2.1
gb|BZ353745.1|BZ353745 SALK_122089.41.60.x Arabidopsis thal... 33 4.1
gb|BZ353746.1|BZ353746 SALK_122091.50.40.x Arabidopsis thal... 33 4.1
gb|BP617951.1|BP617951 BP617951 RAFL16 Arabidopsis thaliana... 33 5.6
emb|BX833934.1|CNS0A22L Arabidopsis thaliana Full-length cD... 28 6.3
>gb|AY117132.1| Arabidopsis thaliana core alpha 1,3-fucosyltransferase mRNA, partial
cds
Length = 1319
Score = 217 bits (469), Expect = 1e-055
Identities = 85/131 (64%), Positives = 107/131 (81%)
Frame = -1 / +2
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
K++GPSDSFKALIDMAAVHSSCRLCI +AT+IH +EE++P+F +PC C+ TVYHL+
Sbjct: 773 KHEGPSDSFKALIDMAAVHSSCRLCIFVATRIHEQEEKSPEFKRQPCKCTRGSETVYHLY 952
Query: 214 IRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRI 35
+RERGRF ESI+++ G LTL ALESAVL KF SL + P+WK ERP S+RG L+++ I
Sbjct: 953 VRERGRFDMESIFLKDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGI 1132
Query: 34 YPVGLTQRQAL 2
YP+GLTQRQAL
Sbjct: 1133 YPIGLTQRQAL 1165
Score = 106 bits (227), Expect = 3e-022
Identities = 56/100 (56%), Positives = 67/100 (67%)
Frame = +3 / -3
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSDLNRPLSRINKW*TVPFLLEQLQGRFV 269
FH G++LRD+N TADS+A V +P M S NRPLS K *TV L LQG +
Sbjct: 1077 FHIGSYLRDMNFARTADSRASRVRFPSFKKMDSMSNRPLSLTYK**TVSEPLVHLQGCLL 898
Query: 270 NFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPS 389
N G+ SS *ILVA +QRRQ+E TAA+SI ALKES+GPS
Sbjct: 897 NSGLFSSCS*ILVATKMQRRQEECTAAISISALKESEGPS 778
Score = 51.0 bits (105), Expect = 2e-005
Identities = 34/125 (27%), Positives = 63/125 (50%)
Frame = +2 / -2
Query: 2 QSLTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHIN 181
+SL+L T+ + + ++ +S R F+LPY + + + ++ RFQ Q ++ +
Sbjct: 1165 KSLSLSQTNRIYPMYSKLAVSS*ARGSFLLPYWFISQRHELRKNRRFQSFQSQISILQED 986
Query: 182 AL*LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDK 361
+KP S S+ Q++NC +G K + L MN S+ +TTR + H++K
Sbjct: 985 GFHVKPSSFSNIQMINCL*ASGAFAGLSLKLRALLFLLMNPCSHKDAETTRRVYSSHINK 806
Query: 362 SFERI 376
+RI
Sbjct: 805 CLKRI 791
Score = 49.6 bits (102), Expect = 4e-005
Identities = 35/101 (34%), Positives = 54/101 (53%)
Frame = -3 / +1
Query: 374 FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV 195
FF +Y +G + LSSL+ Y+DS ++ + ++TL + Q+ DSL V R+R V
Sbjct: 793 FF*GTY*YGCCTLFLSSLHLCGYKDS*ARREEP*V*ETTLQMHQRLRDSLSFVC*RKRTV 972
Query: 194 *VREHLYEIGPVNTGSLGICSAR*I*VPQPRSCMEG*KATE 72
* HL E ++GS GIC + + V + + ME K E
Sbjct: 973 *HGIHLLEGWKSDSGSSGICGSCEVHVSEI*TNMEEGKTRE 1095
>emb|AJ404860.1|ATH404860 Arabidopsis thaliana mRNA for alpha1,3-fucosyltransferase (FucTA
gene)
Length = 1506
Score = 215 bits (465), Expect = 4e-055
Identities = 85/131 (64%), Positives = 106/131 (80%)
Frame = -1 / +1
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
K++GPSDSFKALIDMAAVHSSCRLCI +AT+I +EE++P+F RPC C+ TVYHL+
Sbjct: 1027 KHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKCTRGSETVYHLY 1206
Query: 214 IRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRI 35
+RERGRF ESI+++ G LTL ALESAVL KF SL + P+WK ERP S+RG L+++ I
Sbjct: 1207 VRERGRFDMESIFLKDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGI 1386
Query: 34 YPVGLTQRQAL 2
YP+GLTQRQAL
Sbjct: 1387 YPIGLTQRQAL 1419
Score = 108 bits (230), Expect = 1e-022
Identities = 56/100 (56%), Positives = 67/100 (67%)
Frame = +3 / -2
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSDLNRPLSRINKW*TVPFLLEQLQGRFV 269
FH G++LRD+N TADS+A V +P M S NRPLS K *TV L LQGR +
Sbjct: 1331 FHIGSYLRDMNFARTADSRASRVRFPSFKKMDSMSNRPLSLTYK**TVSEPLVHLQGRLL 1152
Query: 270 NFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPS 389
N G+ SS ILVA +QRRQ+E TAA+SI ALKES+GPS
Sbjct: 1151 NSGLFSSCSRILVATKMQRRQEECTAAISISALKESEGPS 1032
Score = 51.0 bits (105), Expect = 2e-005
Identities = 34/125 (27%), Positives = 63/125 (50%)
Frame = +2 / -1
Query: 2 QSLTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHIN 181
+SL+L T+ + + ++ +S R F+LPY + + + ++ RFQ Q ++ +
Sbjct: 1419 KSLSLSQTNRIYPMYSKLAVSS*ARGSFLLPYWFISQRHELRKNRRFQSFQSQISILQED 1240
Query: 182 AL*LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDK 361
+KP S S+ Q++NC +G S K + L N S+ +TTR + H++K
Sbjct: 1239 GFHVKPSSFSNIQMINCL*ASGAFAGSSLKLRALLFLLTNPCSHKDAETTRRVYSSHINK 1060
Query: 362 SFERI 376
+RI
Sbjct: 1059 CLKRI 1045
Score = 49.6 bits (102), Expect = 4e-005
Identities = 35/101 (34%), Positives = 54/101 (53%)
Frame = -3 / +3
Query: 374 FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV 195
FF +Y +G + LSSL+ Y+DS ++ + ++TL + Q+ DSL V R+R V
Sbjct: 1047 FF*GTY*YGCCTLFLSSLHLCGYKDS*ARREEP*V*ETTLQMHQRLRDSLSFVC*RKRTV 1226
Query: 194 *VREHLYEIGPVNTGSLGICSAR*I*VPQPRSCMEG*KATE 72
* HL E ++GS GIC + + V + + ME K E
Sbjct: 1227 *HGIHLLEGWKSDSGSSGICGSCEVHVSEI*TNMEEGKTRE 1349
>emb|AJ345084.1|ATH345084 Arabidopsis thaliana mRNA for core-alpha1,3fucosyltransferase 1
(fucT1 gene)
Length = 1729
Score = 215 bits (465), Expect = 4e-055
Identities = 85/131 (64%), Positives = 106/131 (80%)
Frame = -1 / +3
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
K++GPSDSFKALIDMAAVHSSCRLCI +AT+I +EE++P+F RPC C+ TVYHL+
Sbjct: 1119 KHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKCTRGSETVYHLY 1298
Query: 214 IRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRI 35
+RERGRF ESI+++ G LTL ALESAVL KF SL + P+WK ERP S+RG L+++ I
Sbjct: 1299 VRERGRFDMESIFLKDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGI 1478
Query: 34 YPVGLTQRQAL 2
YP+GLTQRQAL
Sbjct: 1479 YPIGLTQRQAL 1511
Score = 108 bits (230), Expect = 1e-022
Identities = 56/100 (56%), Positives = 67/100 (67%)
Frame = +3 / -1
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSDLNRPLSRINKW*TVPFLLEQLQGRFV 269
FH G++LRD+N TADS+A V +P M S NRPLS K *TV L LQGR +
Sbjct: 1423 FHIGSYLRDMNFARTADSRASRVRFPSFKKMDSMSNRPLSLTYK**TVSEPLVHLQGRLL 1244
Query: 270 NFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPS 389
N G+ SS ILVA +QRRQ+E TAA+SI ALKES+GPS
Sbjct: 1243 NSGLFSSCSRILVATKMQRRQEECTAAISISALKESEGPS 1124
Score = 51.0 bits (105), Expect = 2e-005
Identities = 34/125 (27%), Positives = 63/125 (50%)
Frame = +2 / -3
Query: 2 QSLTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHIN 181
+SL+L T+ + + ++ +S R F+LPY + + + ++ RFQ Q ++ +
Sbjct: 1511 KSLSLSQTNRIYPMYSKLAVSS*ARGSFLLPYWFISQRHELRKNRRFQSFQSQISILQED 1332
Query: 182 AL*LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDK 361
+KP S S+ Q++NC +G S K + L N S+ +TTR + H++K
Sbjct: 1331 GFHVKPSSFSNIQMINCL*ASGAFAGSSLKLRALLFLLTNPCSHKDAETTRRVYSSHINK 1152
Query: 362 SFERI 376
+RI
Sbjct: 1151 CLKRI 1137
Score = 49.6 bits (102), Expect = 4e-005
Identities = 35/101 (34%), Positives = 54/101 (53%)
Frame = -3 / +2
Query: 374 FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV 195
FF +Y +G + LSSL+ Y+DS ++ + ++TL + Q+ DSL V R+R V
Sbjct: 1139 FF*GTY*YGCCTLFLSSLHLCGYKDS*ARREEP*V*ETTLQMHQRLRDSLSFVC*RKRTV 1318
Query: 194 *VREHLYEIGPVNTGSLGICSAR*I*VPQPRSCMEG*KATE 72
* HL E ++GS GIC + + V + + ME K E
Sbjct: 1319 *HGIHLLEGWKSDSGSSGICGSCEVHVSEI*TNMEEGKTRE 1441
>ref|NM_112815.2| Arabidopsis thaliana FUT11; 4-galactosyl-N-acetylglucosaminide
3-alpha-L-fucosyltransferase/ fucosyltransferase/
transferase, transferring glycosyl > AT3G19280 (FUT11)
mRNA, complete cds
Length = 1709
Score = 215 bits (465), Expect = 4e-055
Identities = 85/131 (64%), Positives = 106/131 (80%)
Frame = -1 / +2
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
K++GPSDSFKALIDMAAVHSSCRLCI +AT+I +EE++P+F RPC C+ TVYHL+
Sbjct: 1118 KHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKCTRGSETVYHLY 1297
Query: 214 IRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRI 35
+RERGRF ESI+++ G LTL ALESAVL KF SL + P+WK ERP S+RG L+++ I
Sbjct: 1298 VRERGRFDMESIFLKDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGI 1477
Query: 34 YPVGLTQRQAL 2
YP+GLTQRQAL
Sbjct: 1478 YPIGLTQRQAL 1510
Score = 108 bits (230), Expect = 1e-022
Identities = 56/100 (56%), Positives = 67/100 (67%)
Frame = +3 / -3
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSDLNRPLSRINKW*TVPFLLEQLQGRFV 269
FH G++LRD+N TADS+A V +P M S NRPLS K *TV L LQGR +
Sbjct: 1422 FHIGSYLRDMNFARTADSRASRVRFPSFKKMDSMSNRPLSLTYK**TVSEPLVHLQGRLL 1243
Query: 270 NFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPS 389
N G+ SS ILVA +QRRQ+E TAA+SI ALKES+GPS
Sbjct: 1242 NSGLFSSCSRILVATKMQRRQEECTAAISISALKESEGPS 1123
Score = 51.0 bits (105), Expect = 2e-005
Identities = 34/125 (27%), Positives = 63/125 (50%)
Frame = +2 / -2
Query: 2 QSLTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHIN 181
+SL+L T+ + + ++ +S R F+LPY + + + ++ RFQ Q ++ +
Sbjct: 1510 KSLSLSQTNRIYPMYSKLAVSS*ARGSFLLPYWFISQRHELRKNRRFQSFQSQISILQED 1331
Query: 182 AL*LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDK 361
+KP S S+ Q++NC +G S K + L N S+ +TTR + H++K
Sbjct: 1330 GFHVKPSSFSNIQMINCL*ASGAFAGSSLKLRALLFLLTNPCSHKDAETTRRVYSSHINK 1151
Query: 362 SFERI 376
+RI
Sbjct: 1150 CLKRI 1136
Score = 49.6 bits (102), Expect = 4e-005
Identities = 35/101 (34%), Positives = 54/101 (53%)
Frame = -3 / +1
Query: 374 FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV 195
FF +Y +G + LSSL+ Y+DS ++ + ++TL + Q+ DSL V R+R V
Sbjct: 1138 FF*GTY*YGCCTLFLSSLHLCGYKDS*ARREEP*V*ETTLQMHQRLRDSLSFVC*RKRTV 1317
Query: 194 *VREHLYEIGPVNTGSLGICSAR*I*VPQPRSCMEG*KATE 72
* HL E ++GS GIC + + V + + ME K E
Sbjct: 1318 *HGIHLLEGWKSDSGSSGICGSCEVHVSEI*TNMEEGKTRE 1440
>gb|AY302219.1| Arabidopsis thaliana alpha 1,3 fucosyltransferase mRNA, complete cds
Length = 1736
Score = 210 bits (453), Expect = 2e-053
Identities = 84/131 (64%), Positives = 105/131 (80%)
Frame = -1 / +3
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
K++GPSDSFKALIDMAAVHSSCRLCI +AT+I +EE++P+F RPC + TVYHL+
Sbjct: 1044 KHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKRTRGSETVYHLY 1223
Query: 214 IRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRI 35
+RERGRF ESI+++ G LTL ALESAVL KF SL + P+WK ERP S+RG L+++ I
Sbjct: 1224 VRERGRFDMESIFLKDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGI 1403
Query: 34 YPVGLTQRQAL 2
YP+GLTQRQAL
Sbjct: 1404 YPIGLTQRQAL 1436
Score = 108 bits (231), Expect = 7e-023
Identities = 56/100 (56%), Positives = 68/100 (68%)
Frame = +3 / -2
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI*MLSDLNRPLSRINKW*TVPFLLEQLQGRFV 269
FH G++LRD+N TADS+A V +P M S NRPLS K *TV L +LQGR +
Sbjct: 1348 FHIGSYLRDMNFARTADSRASRVRFPSFKKMDSMSNRPLSLTYK**TVSEPLVRLQGRLL 1169
Query: 270 NFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPS 389
N G+ SS ILVA +QRRQ+E TAA+SI ALKES+GPS
Sbjct: 1168 NSGLFSSCSRILVATKMQRRQEECTAAISISALKESEGPS 1049
Score = 51.0 bits (105), Expect = 2e-005
Identities = 34/125 (27%), Positives = 63/125 (50%)
Frame = +2 / -1
Query: 2 QSLTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHIN 181
+SL+L T+ + + ++ +S R F+LPY + + + ++ RFQ Q ++ +
Sbjct: 1436 KSLSLSQTNRIYPMYSKLAVSS*ARGSFLLPYWFISQRHELRKNRRFQSFQSQISILQED 1257
Query: 182 AL*LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDK 361
+KP S S+ Q++NC +G S K + L N S+ +TTR + H++K
Sbjct: 1256 GFHVKPSSFSNIQMINCL*ASGAFAGSSLKLRALLFLLTNPCSHKDAETTRRVYSSHINK 1077
Query: 362 SFERI 376
+RI
Sbjct: 1076 CLKRI 1062
Score = 48.3 bits (99), Expect = 1e-004
Identities = 35/101 (34%), Positives = 53/101 (52%)
Frame = -3 / +2
Query: 374 FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV 195
FF +Y +G + LSSL+ Y+DS ++ + ++TL Q+ DSL V R+R V
Sbjct: 1064 FF*GTY*YGCCTLFLSSLHLCGYKDS*ARREEP*V*ETTLQTHQRLRDSLSFVC*RKRTV 1243
Query: 194 *VREHLYEIGPVNTGSLGICSAR*I*VPQPRSCMEG*KATE 72
* HL E ++GS GIC + + V + + ME K E
Sbjct: 1244 *HGIHLLEGWKSDSGSSGICGSCEVHVSEI*TNMEEGKTRE 1366
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 131 bits (280), Expect(2) = 1e-050
Identities = 49/75 (65%), Positives = 63/75 (84%)
Frame = -1 / -1
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
K++GPSDSFKALIDMAAVHSSCRLCI +AT+I +EE++P+F RPC C+ TVYHL+
Sbjct: 6681971 KHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKCTRGSETVYHLY 6681792
Query: 214 IRERGRFKSESIYMR 170
+RERGRF ESI+++
Sbjct: 6681791 VRERGRFDMESIFLK 6681747
Score = 90.0 bits (190), Expect(2) = 1e-050
Identities = 37/57 (64%), Positives = 44/57 (77%)
Frame = -1 / -3
Query: 172 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
R G LTL ALESAVL KF SL + P+WK ERP S+RG L+++ IYP+GLTQRQAL
Sbjct: 6681672 RDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGIYPIGLTQRQAL 6681502
Score = 75.8 bits (159), Expect(2) = 1e-019
Identities = 40/65 (61%), Positives = 46/65 (70%)
Frame = +3 / +1
Query: 195 NRPLSRINKW*TVPFLLEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKE 374
NRPLS K *TV L LQGR +N G+ SS ILVA +QRRQ+E TAA+SI ALKE
Sbjct: 6681772 NRPLSLTYK**TVSEPLVHLQGRLLNSGLFSSCSRILVATKMQRRQEECTAAISISALKE 6681951
Query: 375 SDGPS 389
S+GPS
Sbjct: 6681952 SEGPS 6681966
Score = 41.4 bits (84), Expect(2) = 1e-019
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3 / +2
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI 176
FH G++LRD+N TADS+A V +P L+
Sbjct: 6681590 FHIGSYLRDMNFARTADSRASRVRFPSLL 6681676
Score = 40.9 bits (83), Expect = 0.018
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = -3 / -3
Query: 374 FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV 195
FF +Y +G + LSSL+ Y+DS ++ + ++TL + Q+ DSL V R+R V
Sbjct: 6681951 FF*GTY*YGCCTLFLSSLHLCGYKDS*ARREEP*V*ETTLQMHQRLRDSLSFVC*RKRTV 6681772
Query: 194 *VREHLYEI 168
* HL E+
Sbjct: 6681771 *HGIHLLEV 6681745
Score = 35.9 bits (72), Expect = 0.60
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2 / +3
Query: 191 LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDKSFE 370
+KP S S+ Q++NC +G S K + L N S+ +TTR + H++K +
Sbjct: 6681768 VKPSSFSNIQMINCL*ASGAFAGSSLKLRALLFLLTNPCSHKDAETTRRVYSSHINKCLK 6681947
Query: 371 RI 376
RI
Sbjct: 6681948 RI 6681953
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 131 bits (280), Expect(2) = 1e-050
Identities = 49/75 (65%), Positives = 63/75 (84%)
Frame = -1 / -3
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
K++GPSDSFKALIDMAAVHSSCRLCI +AT+I +EE++P+F RPC C+ TVYHL+
Sbjct: 6653251 KHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKCTRGSETVYHLY 6653072
Query: 214 IRERGRFKSESIYMR 170
+RERGRF ESI+++
Sbjct: 6653071 VRERGRFDMESIFLK 6653027
Score = 90.0 bits (190), Expect(2) = 1e-050
Identities = 37/57 (64%), Positives = 44/57 (77%)
Frame = -1 / -2
Query: 172 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
R G LTL ALESAVL KF SL + P+WK ERP S+RG L+++ IYP+GLTQRQAL
Sbjct: 6652952 RDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGIYPIGLTQRQAL 6652782
Score = 75.8 bits (159), Expect(2) = 1e-019
Identities = 40/65 (61%), Positives = 46/65 (70%)
Frame = +3 / +3
Query: 195 NRPLSRINKW*TVPFLLEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKE 374
NRPLS K *TV L LQGR +N G+ SS ILVA +QRRQ+E TAA+SI ALKE
Sbjct: 6653052 NRPLSLTYK**TVSEPLVHLQGRLLNSGLFSSCSRILVATKMQRRQEECTAAISISALKE 6653231
Query: 375 SDGPS 389
S+GPS
Sbjct: 6653232 SEGPS 6653246
Score = 41.4 bits (84), Expect(2) = 1e-019
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3 / +1
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI 176
FH G++LRD+N TADS+A V +P L+
Sbjct: 6652870 FHIGSYLRDMNFARTADSRASRVRFPSLL 6652956
Score = 40.9 bits (83), Expect = 0.018
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = -3 / -2
Query: 374 FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV 195
FF +Y +G + LSSL+ Y+DS ++ + ++TL + Q+ DSL V R+R V
Sbjct: 6653231 FF*GTY*YGCCTLFLSSLHLCGYKDS*ARREEP*V*ETTLQMHQRLRDSLSFVC*RKRTV 6653052
Query: 194 *VREHLYEI 168
* HL E+
Sbjct: 6653051 *HGIHLLEV 6653025
Score = 35.9 bits (72), Expect = 0.60
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2 / +2
Query: 191 LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDKSFE 370
+KP S S+ Q++NC +G S K + L N S+ +TTR + H++K +
Sbjct: 6653048 VKPSSFSNIQMINCL*ASGAFAGSSLKLRALLFLLTNPCSHKDAETTRRVYSSHINKCLK 6653227
Query: 371 RI 376
RI
Sbjct: 6653228 RI 6653233
>dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11
Length = 81875
Score = 131 bits (280), Expect(2) = 1e-050
Identities = 49/75 (65%), Positives = 63/75 (84%)
Frame = -1 / -1
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
K++GPSDSFKALIDMAAVHSSCRLCI +AT+I +EE++P+F RPC C+ TVYHL+
Sbjct: 77066 KHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKCTRGSETVYHLY 76887
Query: 214 IRERGRFKSESIYMR 170
+RERGRF ESI+++
Sbjct: 76886 VRERGRFDMESIFLK 76842
Score = 90.0 bits (190), Expect(2) = 1e-050
Identities = 37/57 (64%), Positives = 44/57 (77%)
Frame = -1 / -3
Query: 172 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
R G LTL ALESAVL KF SL + P+WK ERP S+RG L+++ IYP+GLTQRQAL
Sbjct: 76767 RDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGIYPIGLTQRQAL 76597
Score = 75.8 bits (159), Expect(2) = 1e-019
Identities = 40/65 (61%), Positives = 46/65 (70%)
Frame = +3 / +1
Query: 195 NRPLSRINKW*TVPFLLEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKE 374
NRPLS K *TV L LQGR +N G+ SS ILVA +QRRQ+E TAA+SI ALKE
Sbjct: 76867 NRPLSLTYK**TVSEPLVHLQGRLLNSGLFSSCSRILVATKMQRRQEECTAAISISALKE 77046
Query: 375 SDGPS 389
S+GPS
Sbjct: 77047 SEGPS 77061
Score = 41.4 bits (84), Expect(2) = 1e-019
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3 / +2
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI 176
FH G++LRD+N TADS+A V +P L+
Sbjct: 76685 FHIGSYLRDMNFARTADSRASRVRFPSLL 76771
Score = 40.9 bits (83), Expect = 0.018
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = -3 / -3
Query: 374 FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV 195
FF +Y +G + LSSL+ Y+DS ++ + ++TL + Q+ DSL V R+R V
Sbjct: 77046 FF*GTY*YGCCTLFLSSLHLCGYKDS*ARREEP*V*ETTLQMHQRLRDSLSFVC*RKRTV 76867
Query: 194 *VREHLYEI 168
* HL E+
Sbjct: 76866 *HGIHLLEV 76840
Score = 35.9 bits (72), Expect(2) = 0.007
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2 / +3
Query: 191 LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDKSFE 370
+KP S S+ Q++NC +G S K + L N S+ +TTR + H++K +
Sbjct: 76863 VKPSSFSNIQMINCL*ASGAFAGSSLKLRALLFLLTNPCSHKDAETTRRVYSSHINKCLK 77042
Query: 371 RI 376
RI
Sbjct: 77043 RI 77048
Score = 24.0 bits (46), Expect(2) = 0.007
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2 / +1
Query: 2 QSLTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQ 154
+SL+L T+ + + ++ +S R F+LPY + + + ++ RFQ Q
Sbjct: 76597 KSLSLSQTNRIYPMYSKLAVSS*ARGSFLLPYWFISQRHELRKNRRFQSFQ 76749
>ref|NM_103858.2| Arabidopsis thaliana FUT12; fucosyltransferase/ transferase,
transferring glycosyl groups AT1G49710 (FUT12) mRNA,
complete cds
Length = 1984
Score = 123 bits (263), Expect(2) = 5e-050
Identities = 48/77 (62%), Positives = 63/77 (81%)
Frame = -1 / +3
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDD 53
TVYH+F+RERGRF+ ES+++R +T ALESAVL KF+SL H VWK ERP +++G +
Sbjct: 1383 TVYHVFVRERGRFEMESVFLRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKE 1562
Query: 52 LKLYRIYPVGLTQRQAL 2
LK++RIYP+GLTQRQAL
Sbjct: 1563 LKIHRIYPLGLTQRQAL 1613
Score = 95.9 bits (203), Expect(2) = 5e-050
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / +3
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 1218 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFKKRPCKCS 1367
Score = 59.3 bits (123), Expect(4) = 6e-016
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / -1
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GRF+ G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 1369 LLHLHGRFLKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 1220
Score = 31.8 bits (63), Expect(4) = 6e-016
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -1
Query: 90 FHTGTWLRDLNLPSTADSKA 149
FHT + +DLNL TADS+A
Sbjct: 1525 FHTASCFKDLNLARTADSRA 1466
Score = 24.4 bits (47), Expect(4) = 6e-016
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -1
Query: 3 KA*RCVRPTG*I 38
KA RCVRP+G*I
Sbjct: 1612 KACRCVRPSG*I 1577
Score = 23.1 bits (44), Expect(4) = 6e-016
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2 / -3
Query: 194 KPPSLSDKQVVNC 232
KP S S+K ++NC
Sbjct: 1421 KPASFSNKNMINC 1383
>gb|AY054522.1| Arabidopsis thaliana Putative fucosyltransferase (At1g49710;
F14J22.8) mRNA, complete cds
Length = 1938
Score = 123 bits (263), Expect(2) = 5e-050
Identities = 48/77 (62%), Positives = 63/77 (81%)
Frame = -1 / +1
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDD 53
TVYH+F+RERGRF+ ES+++R +T ALESAVL KF+SL H VWK ERP +++G +
Sbjct: 1384 TVYHVFVRERGRFEMESVFLRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKE 1563
Query: 52 LKLYRIYPVGLTQRQAL 2
LK++RIYP+GLTQRQAL
Sbjct: 1564 LKIHRIYPLGLTQRQAL 1614
Score = 95.9 bits (203), Expect(2) = 5e-050
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / +1
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 1219 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFKKRPCKCS 1368
Score = 59.3 bits (123), Expect(4) = 6e-016
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / -2
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GRF+ G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 1370 LLHLHGRFLKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 1221
Score = 31.8 bits (63), Expect(4) = 6e-016
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -2
Query: 90 FHTGTWLRDLNLPSTADSKA 149
FHT + +DLNL TADS+A
Sbjct: 1526 FHTASCFKDLNLARTADSRA 1467
Score = 24.4 bits (47), Expect(4) = 6e-016
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 3 KA*RCVRPTG*I 38
KA RCVRP+G*I
Sbjct: 1613 KACRCVRPSG*I 1578
Score = 23.1 bits (44), Expect(4) = 6e-016
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2 / -1
Query: 194 KPPSLSDKQVVNC 232
KP S S+K ++NC
Sbjct: 1422 KPASFSNKNMINC 1384
>emb|AJ404861.2|ATH404861 Arabidopsis thaliana mRNA for truncated alpha1,3-fucosyltransferase
(FucTB gene)
Length = 1834
Score = 123 bits (263), Expect(2) = 5e-050
Identities = 48/77 (62%), Positives = 63/77 (81%)
Frame = -1 / +2
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDD 53
TVYH+F+RERGRF+ ES+++R +T ALESAVL KF+SL H VWK ERP +++G +
Sbjct: 1298 TVYHVFVRERGRFEMESVFLRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKE 1477
Query: 52 LKLYRIYPVGLTQRQAL 2
LK++RIYP+GLTQRQAL
Sbjct: 1478 LKIHRIYPLGLTQRQAL 1528
Score = 95.9 bits (203), Expect(2) = 5e-050
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / +2
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 1133 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFKKRPCKCS 1282
Score = 59.3 bits (123), Expect(4) = 6e-016
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / -2
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GRF+ G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 1284 LLHLHGRFLKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 1135
Score = 31.8 bits (63), Expect(4) = 6e-016
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -2
Query: 90 FHTGTWLRDLNLPSTADSKA 149
FHT + +DLNL TADS+A
Sbjct: 1440 FHTASCFKDLNLARTADSRA 1381
Score = 24.4 bits (47), Expect(4) = 6e-016
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 3 KA*RCVRPTG*I 38
KA RCVRP+G*I
Sbjct: 1527 KACRCVRPSG*I 1492
Score = 23.1 bits (44), Expect(4) = 6e-016
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2 / -1
Query: 194 KPPSLSDKQVVNC 232
KP S S+K ++NC
Sbjct: 1336 KPASFSNKNMINC 1298
>gb|BT002570.1| Arabidopsis thaliana Putative fucosyltransferase (At1g49710) mRNA,
complete cds
Length = 1725
Score = 123 bits (263), Expect(2) = 5e-050
Identities = 48/77 (62%), Positives = 63/77 (81%)
Frame = -1 / +1
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDD 53
TVYH+F+RERGRF+ ES+++R +T ALESAVL KF+SL H VWK ERP +++G +
Sbjct: 1225 TVYHVFVRERGRFEMESVFLRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKE 1404
Query: 52 LKLYRIYPVGLTQRQAL 2
LK++RIYP+GLTQRQAL
Sbjct: 1405 LKIHRIYPLGLTQRQAL 1455
Score = 95.9 bits (203), Expect(2) = 5e-050
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / +1
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 1060 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFKKRPCKCS 1209
Score = 59.3 bits (123), Expect(4) = 6e-016
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / -2
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GRF+ G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 1211 LLHLHGRFLKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 1062
Score = 31.8 bits (63), Expect(4) = 6e-016
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -2
Query: 90 FHTGTWLRDLNLPSTADSKA 149
FHT + +DLNL TADS+A
Sbjct: 1367 FHTASCFKDLNLARTADSRA 1308
Score = 24.4 bits (47), Expect(4) = 6e-016
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 3 KA*RCVRPTG*I 38
KA RCVRP+G*I
Sbjct: 1454 KACRCVRPSG*I 1419
Score = 23.1 bits (44), Expect(4) = 6e-016
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2 / -1
Query: 194 KPPSLSDKQVVNC 232
KP S S+K ++NC
Sbjct: 1263 KPASFSNKNMINC 1225
>gb|AY184990.1| Arabidopsis thaliana core alpha 1, 3-fucosyltransferase mRNA,
complete cds
Length = 1607
Score = 123 bits (263), Expect(2) = 5e-050
Identities = 48/77 (62%), Positives = 63/77 (81%)
Frame = -1 / +3
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDD 53
TVYH+F+RERGRF+ ES+++R +T ALESAVL KF+SL H VWK ERP +++G +
Sbjct: 1272 TVYHVFVRERGRFEMESVFLRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKE 1451
Query: 52 LKLYRIYPVGLTQRQAL 2
LK++RIYP+GLTQRQAL
Sbjct: 1452 LKIHRIYPLGLTQRQAL 1502
Score = 95.9 bits (203), Expect(2) = 5e-050
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / +3
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 1107 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFKKRPCKCS 1256
Score = 59.3 bits (123), Expect(4) = 6e-016
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / -2
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GRF+ G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 1258 LLHLHGRFLKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 1109
Score = 31.8 bits (63), Expect(4) = 6e-016
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -2
Query: 90 FHTGTWLRDLNLPSTADSKA 149
FHT + +DLNL TADS+A
Sbjct: 1414 FHTASCFKDLNLARTADSRA 1355
Score = 24.4 bits (47), Expect(4) = 6e-016
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 3 KA*RCVRPTG*I 38
KA RCVRP+G*I
Sbjct: 1501 KACRCVRPSG*I 1466
Score = 23.1 bits (44), Expect(4) = 6e-016
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2 / -1
Query: 194 KPPSLSDKQVVNC 232
KP S S+K ++NC
Sbjct: 1310 KPASFSNKNMINC 1272
>gb|AY184991.1| Arabidopsis thaliana alpha 1, 3-fucosyltransferase-like protein mRNA,
complete cds; alternatively spliced
Length = 1568
Score = 123 bits (263), Expect(2) = 5e-050
Identities = 48/77 (62%), Positives = 63/77 (81%)
Frame = -1 / +3
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDD 53
TVYH+F+RERGRF+ ES+++R +T ALESAVL KF+SL H VWK ERP +++G +
Sbjct: 1233 TVYHVFVRERGRFEMESVFLRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKE 1412
Query: 52 LKLYRIYPVGLTQRQAL 2
LK++RIYP+GLTQRQAL
Sbjct: 1413 LKIHRIYPLGLTQRQAL 1463
Score = 95.9 bits (203), Expect(2) = 5e-050
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / +3
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 1068 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFKKRPCKCS 1217
Score = 59.3 bits (123), Expect(4) = 2e-016
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / -2
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GRF+ G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 1219 LLHLHGRFLKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 1070
Score = 31.8 bits (63), Expect(4) = 2e-016
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -2
Query: 90 FHTGTWLRDLNLPSTADSKA 149
FHT + +DLNL TADS+A
Sbjct: 1375 FHTASCFKDLNLARTADSRA 1316
Score = 24.9 bits (48), Expect(4) = 2e-016
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2 / -1
Query: 191 LKPPSLSDKQVVNC 232
LKP S S+K ++NC
Sbjct: 1274 LKPASFSNKNMINC 1233
Score = 24.4 bits (47), Expect(4) = 2e-016
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 3 KA*RCVRPTG*I 38
KA RCVRP+G*I
Sbjct: 1462 KACRCVRPSG*I 1427
>emb|AJ345085.1|ATH345085 Arabidopsis thaliana mRNA for core-alpha1,3fucosyltransferase 2
(fucT2 gene)
Length = 1542
Score = 123 bits (263), Expect(2) = 5e-050
Identities = 48/77 (62%), Positives = 63/77 (81%)
Frame = -1 / +1
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDD 53
TVYH+F+RERGRF+ ES+++R +T ALESAVL KF+SL H VWK ERP +++G +
Sbjct: 1225 TVYHVFVRERGRFEMESVFLRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKE 1404
Query: 52 LKLYRIYPVGLTQRQAL 2
LK++RIYP+GLTQRQAL
Sbjct: 1405 LKIHRIYPLGLTQRQAL 1455
Score = 95.9 bits (203), Expect(2) = 5e-050
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / +1
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 1060 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFKKRPCKCS 1209
Score = 59.3 bits (123), Expect(4) = 6e-016
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / -2
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GRF+ G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 1211 LLHLHGRFLKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 1062
Score = 31.8 bits (63), Expect(4) = 6e-016
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -2
Query: 90 FHTGTWLRDLNLPSTADSKA 149
FHT + +DLNL TADS+A
Sbjct: 1367 FHTASCFKDLNLARTADSRA 1308
Score = 24.4 bits (47), Expect(4) = 6e-016
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 3 KA*RCVRPTG*I 38
KA RCVRP+G*I
Sbjct: 1454 KACRCVRPSG*I 1419
Score = 23.1 bits (44), Expect(4) = 6e-016
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2 / -1
Query: 194 KPPSLSDKQVVNC 232
KP S S+K ++NC
Sbjct: 1263 KPASFSNKNMINC 1225
>emb|AL093853.1|CNS00WOV Arabidopsis thaliana genome survey sequence SP6 end of BAC T12B16
of TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 543
Score = 131 bits (280), Expect(2) = 4e-042
Identities = 49/75 (65%), Positives = 63/75 (84%)
Frame = -1 / -2
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
K++GPSDSFKALIDMAAVHSSCRLCI +AT+I +EE++P+F RPC C+ TVYHL+
Sbjct: 416 KHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKCTRGSETVYHLY 237
Query: 214 IRERGRFKSESIYMR 170
+RERGRF ESI+++
Sbjct: 236 VRERGRFDMESIFLK 192
Score = 75.8 bits (159), Expect(2) = 8e-020
Identities = 40/65 (61%), Positives = 46/65 (70%)
Frame = +3 / +1
Query: 195 NRPLSRINKW*TVPFLLEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKE 374
NRPLS K *TV L LQGR +N G+ SS ILVA +QRRQ+E TAA+SI ALKE
Sbjct: 217 NRPLSLTYK**TVSEPLVHLQGRLLNSGLFSSCSRILVATKMQRRQEECTAAISISALKE 396
Query: 375 SDGPS 389
S+GPS
Sbjct: 397 SEGPS 411
Score = 61.1 bits (127), Expect(2) = 4e-042
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = -1 / -1
Query: 172 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRG 62
R G LTL ALESAVL KF SL + P+WK ERP S+RG
Sbjct: 117 RDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRG 7
Score = 41.4 bits (84), Expect(2) = 8e-020
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3 / +2
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI 176
FH G++LRD+N TADS+A V +P L+
Sbjct: 35 FHIGSYLRDMNFARTADSRASRVRFPSLL 121
Score = 40.9 bits (83), Expect = 0.018
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = -3 / -1
Query: 374 FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV 195
FF +Y +G + LSSL+ Y+DS ++ + ++TL + Q+ DSL V R+R V
Sbjct: 396 FF*GTY*YGCCTLFLSSLHLCGYKDS*ARREEP*V*ETTLQMHQRLRDSLSFVC*RKRTV 217
Query: 194 *VREHLYEI 168
* HL E+
Sbjct: 216 *HGIHLLEV 190
Score = 35.9 bits (72), Expect(2) = 0.033
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2 / +3
Query: 191 LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDKSFE 370
+KP S S+ Q++NC +G S K + L N S+ +TTR + H++K +
Sbjct: 213 VKPSSFSNIQMINCL*ASGAFAGSSLKLRALLFLLTNPCSHKDAETTRRVYSSHINKCLK 392
Query: 371 RI 376
RI
Sbjct: 393 RI 398
Score = 21.2 bits (40), Expect(2) = 0.033
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2 / +1
Query: 62 TSNTRWPFILPYRNVVEGPKFTEHCRFQGSQ 154
+S R F+LPY + + + ++ RFQ Q
Sbjct: 7 SS*ARGSFLLPYWFISQRHELRKNRRFQSFQ 99
>gb|B67847.1|B67847 T24K12TR TAMU Arabidopsis thaliana genomic clone T24K12, DNA
sequence
Length = 669
Score = 131 bits (280), Expect(2) = 6e-042
Identities = 49/75 (65%), Positives = 63/75 (84%)
Frame = -1 / -1
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
K++GPSDSFKALIDMAAVHSSCRLCI +AT+I +EE++P+F RPC C+ TVYHL+
Sbjct: 423 KHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKCTRGSETVYHLY 244
Query: 214 IRERGRFKSESIYMR 170
+RERGRF ESI+++
Sbjct: 243 VRERGRFDMESIFLK 199
Score = 75.8 bits (159), Expect(2) = 1e-019
Identities = 40/65 (61%), Positives = 46/65 (70%)
Frame = +3 / +2
Query: 195 NRPLSRINKW*TVPFLLEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKE 374
NRPLS K *TV L LQGR +N G+ SS ILVA +QRRQ+E TAA+SI ALKE
Sbjct: 224 NRPLSLTYK**TVSEPLVHLQGRLLNSGLFSSCSRILVATKMQRRQEECTAAISISALKE 403
Query: 375 SDGPS 389
S+GPS
Sbjct: 404 SEGPS 418
Score = 61.1 bits (127), Expect(2) = 6e-042
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = -1 / -3
Query: 172 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRG 62
R G LTL ALESAVL KF SL + P+WK ERP S+RG
Sbjct: 124 RDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRG 14
Score = 41.4 bits (84), Expect(2) = 1e-019
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3 / +3
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI 176
FH G++LRD+N TADS+A V +P L+
Sbjct: 42 FHIGSYLRDMNFARTADSRASRVRFPSLL 128
Score = 40.9 bits (83), Expect = 0.018
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = -3 / -3
Query: 374 FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVYPRERAV 195
FF +Y +G + LSSL+ Y+DS ++ + ++TL + Q+ DSL V R+R V
Sbjct: 403 FF*GTY*YGCCTLFLSSLHLCGYKDS*ARREEP*V*ETTLQMHQRLRDSLSFVC*RKRTV 224
Query: 194 *VREHLYEI 168
* HL E+
Sbjct: 223 *HGIHLLEV 197
Score = 35.9 bits (72), Expect = 0.60
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2 / +1
Query: 191 LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDKSFE 370
+KP S S+ Q++NC +G S K + L N S+ +TTR + H++K +
Sbjct: 220 VKPSSFSNIQMINCL*ASGAFAGSSLKLRALLFLLTNPCSHKDAETTRRVYSSHINKCLK 399
Query: 371 RI 376
RI
Sbjct: 400 RI 405
>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete
sequence
Length = 104679
Score = 95.9 bits (203), Expect(2) = 2e-036
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / +3
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 44664 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFKKRPCKCS 44813
Score = 85.8 bits (181), Expect(2) = 2e-036
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = -1 / +1
Query: 181 IYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
+ R +T ALESAVL KF+SL H VWK ERP +++G +LK++RIYP+GLTQRQAL
Sbjct: 44968 VQSRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKELKIHRIYPLGLTQRQAL 45147
Score = 59.3 bits (123), Expect(2) = 1e-009
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / -3
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GRF+ G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 44815 LLHLHGRFLKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 44666
Score = 46.0 bits (94), Expect = 6e-004
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = -1 / +3
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGA 146
TVYH+F+RERGRF+ ES+++R L+ G+
Sbjct: 44829 TVYHVFVRERGRFEMESVFLR*ESLSFGS 44915
Score = 31.8 bits (63), Expect(2) = 1e-009
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -2
Query: 90 FHTGTWLRDLNLPSTADSKA 149
FHT + +DLNL TADS+A
Sbjct: 45059 FHTASCFKDLNLARTADSRA 45000
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 95.9 bits (203), Expect(2) = 2e-034
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / -2
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 2751454 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFKKRPCKCS 2751305
Score = 85.8 bits (181), Expect(2) = 2e-034
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = -1 / -3
Query: 181 IYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
+ R +T ALESAVL KF+SL H VWK ERP +++G +LK++RIYP+GLTQRQAL
Sbjct: 2751150 VQSRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKELKIHRIYPLGLTQRQAL 2750971
Score = 59.3 bits (123), Expect = 6e-008
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / +3
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GRF+ G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 2751303 LLHLHGRFLKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 2751452
Score = 46.0 bits (94), Expect = 6e-004
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = -1 / -2
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGA 146
TVYH+F+RERGRF+ ES+++R L+ G+
Sbjct: 2751289 TVYHVFVRERGRFEMESVFLR*ESLSFGS 2751203
Score = 31.8 bits (63), Expect(2) = 0.049
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / +2
Query: 90 FHTGTWLRDLNLPSTADSKA 149
FHT + +DLNL TADS+A
Sbjct: 2751059 FHTASCFKDLNLARTADSRA 2751118
Score = 24.4 bits (47), Expect(2) = 0.049
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / +2
Query: 3 KA*RCVRPTG*I 38
KA RCVRP+G*I
Sbjct: 2750972 KACRCVRPSG*I 2751007
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 95.9 bits (203), Expect(2) = 5e-034
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / -2
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 18395860 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFKKRPCKCS 18395711
Score = 85.8 bits (181), Expect(2) = 5e-034
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = -1 / -3
Query: 181 IYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
+ R +T ALESAVL KF+SL H VWK ERP +++G +LK++RIYP+GLTQRQAL
Sbjct: 18395556 VQSRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKELKIHRIYPLGLTQRQAL 18395377
Score = 59.3 bits (123), Expect = 6e-008
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / +3
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GRF+ G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 18395709 LLHLHGRFLKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 18395858
Score = 46.0 bits (94), Expect = 6e-004
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = -1 / -2
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGA 146
TVYH+F+RERGRF+ ES+++R L+ G+
Sbjct: 18395695 TVYHVFVRERGRFEMESVFLR*ESLSFGS 18395609
>gb|BX835636.1|BX835636 BX835636 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS94ZE07 3PRIM, mRNA
sequence
Length = 548
Score = 117 bits (250), Expect = 2e-025
Identities = 47/77 (61%), Positives = 61/77 (79%)
Frame = -1 / -3
Query: 232 TVYHLFIRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDD 53
TVYH+F+RERGR + ES+ +R +T ALESAVL KF+SL H VWK ERP +++G +
Sbjct: 516 TVYHVFVRERGRSEMESVSLRGKSVTQEALESAVLAKFKSLKHEAVWKKERPGNLKGDKE 337
Query: 52 LKLYRIYPVGLTQRQAL 2
LK++RIYP+GLTQRQAL
Sbjct: 336 LKIHRIYPLGLTQRQAL 286
Score = 33.1 bits (66), Expect(3) = 4e-004
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3 / +2
Query: 90 FHTGTWLRDLNLPSTADSKA 149
FHT + RDLNL TADS+A
Sbjct: 374 FHTASCFRDLNLARTADSRA 433
Score = 24.4 bits (47), Expect(3) = 4e-004
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / +2
Query: 3 KA*RCVRPTG*I 38
KA RCVRP+G*I
Sbjct: 287 KACRCVRPSG*I 322
Score = 21.7 bits (41), Expect(3) = 4e-004
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +2 / +1
Query: 194 KPPSLSDKQVVNC 232
+P S S+K ++NC
Sbjct: 478 RPASFSNKNMINC 516
>gb|CK120486.1|CK120486 218i09.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011I09218
5-PRIME, mRNA sequence
Length = 800
Score = 96.4 bits (204), Expect = 4e-019
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1 / +3
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
KY+GPSDSFKAL+DMAAVHSSCRLCI +AT++ +EE +P F RPC CS
Sbjct: 636 KYEGPSDSFKALVDMAAVHSSCRLCIFLATRVREQEEESPNFXERPCKCS 785
Score = 54.7 bits (113), Expect = 1e-006
Identities = 28/50 (56%), Positives = 33/50 (66%)
Frame = +3 / -2
Query: 243 LEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
L L GR G+ SS LVA +QRRQ+E TAA+S ALKES+GPSY
Sbjct: 787 LLHLHGRSXKLGLSSSCSRTLVARKMQRRQEECTAAISTSALKESEGPSY 638
>gb|BP611430.1|BP611430 BP611430 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-85-L16 3',
mRNA sequence
Length = 466
Score = 72.5 bits (152), Expect = 6e-012
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = -1 / -1
Query: 133 VLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
VL KF+SL H VWK ERP +++G +LK++RIYP+GLTQRQAL
Sbjct: 463 VLPKFKSLKHEAVWKKERPGNLKGDKELKIHRIYPLGLTQRQAL 332
>gb|BP671647.1|BP671647 BP671647 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-41-E06 3',
mRNA sequence
Length = 425
Score = 65.7 bits (137), Expect = 7e-010
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = -1 / -2
Query: 112 LNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
L H PVWK ERP +++G +LK++RIYP+GLTQRQAL
Sbjct: 424 LKHEPVWKKERPGNLKGDKELKIHRIYPLGLTQRQAL 314
>gb|AV792413.1|AV792413 AV792413 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-14-O09 3',
mRNA sequence
Length = 433
Score = 60.2 bits (125), Expect = 3e-008
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = -1 / -1
Query: 106 HVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
H VWK ERP +++G +LK++RIYP+GLTQRQAL
Sbjct: 430 HEAVWKKERPGNLKGDKELKIHRIYPLGLTQRQAL 326
>gb|B98368.1|B98368 T24C14TFB TAMU Arabidopsis thaliana genomic clone T24C14, DNA
sequence
Length = 181
Score = 56.5 bits (117), Expect = 4e-007
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -1
Query: 172 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDL 50
R G LTL ALESA KF SL + P+WK ERP S+RG L
Sbjct: 124 RDGNLTLEALESAAHAKFMSLRYEPIWKKERPASLRGDGKL 2
Score = 37.7 bits (76), Expect = 0.17
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3 / +3
Query: 90 FHTGTWLRDLNLPSTADSKAPSVNWPDLI 176
FH G++LRD+N ADS+A V +P L+
Sbjct: 42 FHIGSYLRDMNFA*AADSRASRVRFPSLL 128
>gb|AV792426.1|AV792426 AV792426 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-14-P14 3',
mRNA sequence
Length = 435
Score = 40.0 bits (81), Expect = 0.035
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = -1 / -2
Query: 64 GGDDLKLYRIYPVGLTQRQAL 2
G +LK++RIYP+GLTQRQAL
Sbjct: 434 GDKELKIHRIYPLGLTQRQAL 372
>emb|CR398045.1| Arabidopsis thaliana T-DNA flanking sequence GK-607E01-026184,
genomic survey sequence
Length = 96
Score = 38.2 bits (77), Expect = 0.12
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -1 / +1
Query: 394 KYDGPSDSFKALIDMAAV 341
K +GPSDSFKALIDMAAV
Sbjct: 43 KPEGPSDSFKALIDMAAV 96
>emb|CR398044.1| Arabidopsis thaliana T-DNA flanking sequence GK-607E01-026183,
genomic survey sequence
Length = 99
Score = 36.8 bits (74), Expect = 0.32
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -1 / +2
Query: 394 KYDGPSDSFKALIDMAAV 341
K++ PSDSFKALIDMAAV
Sbjct: 26 KHERPSDSFKALIDMAAV 79
>gb|Z26752.1|Z26752 ATTS1833 AC16H Arabidopsis thaliana cDNA clone TAI343, mRNA
sequence
Length = 370
Score = 28.1 bits (55), Expect(2) = 1.5
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -2 / -2
Query: 156 HWEPWNLQCSV 124
HW PWN+ C++
Sbjct: 147 HWNPWNVVCTI 115
Score = 22.6 bits (43), Expect(2) = 1.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3 / -1
Query: 335 ILSSLYTYCYQ 303
+L LY+YCYQ
Sbjct: 196 LLYRLYSYCYQ 164
>gb|AV563748.1|AV563748 AV563748 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ192e11F 3', mRNA sequence
Length = 414
Score = 28.1 bits (55), Expect(2) = 1.7
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -2 / +3
Query: 156 HWEPWNLQCSV 124
HW PWN+ C++
Sbjct: 354 HWNPWNVVCTI 386
Score = 22.6 bits (43), Expect(2) = 1.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3 / +2
Query: 335 ILSSLYTYCYQ 303
+L LY+YCYQ
Sbjct: 305 LLYRLYSYCYQ 337
>gb|AV536591.1|AV536591 AV536591 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0321R 5', mRNA
sequence
Length = 511
Score = 28.1 bits (55), Expect(2) = 2.1
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -2 / +1
Query: 156 HWEPWNLQCSV 124
HW PWN+ C++
Sbjct: 340 HWNPWNVVCTI 372
Score = 22.6 bits (43), Expect(2) = 2.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3 / +3
Query: 335 ILSSLYTYCYQ 303
+L LY+YCYQ
Sbjct: 291 LLYRLYSYCYQ 323
>gb|BZ353745.1|BZ353745 SALK_122089.41.60.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_122089.41.60.x,
DNA sequence
Length = 156
Score = 33.1 bits (66), Expect = 4.1
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -1 / -3
Query: 52 LKLYRIYPVGLTQRQAL 2
L+++ IYP+GLTQRQAL
Sbjct: 154 LRVHGIYPIGLTQRQAL 104
>gb|BZ353746.1|BZ353746 SALK_122091.50.40.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_122091.50.40.x,
DNA sequence
Length = 395
Score = 33.1 bits (66), Expect = 4.1
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -1 / -3
Query: 52 LKLYRIYPVGLTQRQAL 2
L+++ IYP+GLTQRQAL
Sbjct: 393 LRVHGIYPIGLTQRQAL 343
>gb|BP617951.1|BP617951 BP617951 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-26-D21 3',
mRNA sequence
Length = 418
Score = 32.7 bits (65), Expect = 5.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1 / -1
Query: 214 IRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWK 89
IRE G + +IY + L + S +F +NH+PV+K
Sbjct: 346 IRETGHLRF*AIYSKLFSWLLSSCCSRFFNRFSGMNHIPVFK 221
>emb|BX833934.1|CNS0A22L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL84ZC09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 780
Score = 28.1 bits (55), Expect(2) = 6.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -2 / -3
Query: 156 HWEPWNLQCSV 124
HW PWN+ C++
Sbjct: 418 HWNPWNVVCTI 386
Score = 22.6 bits (43), Expect(2) = 6.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3 / -2
Query: 335 ILSSLYTYCYQ 303
+L LY+YCYQ
Sbjct: 467 LLYRLYSYCYQ 435
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 817,662,189
Number of Sequences: 1013581
Number of extensions: 10088192
Number of successful extensions: 231432
Number of sequences better than 10.0: 43
length of database: 302,980,290
effective HSP length: 53
effective length of database: 249,260,497
effective search space used: 19193058269
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)