TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS19f07.yg.2.1
(626 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induc... 375 e-103
gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At... 375 e-103
ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription ... 375 e-103
gb|AF042195.1|AF042195 Arabidopsis thaliana auxin response ... 346 4e-094
gb|AY080595.1| Arabidopsis thaliana unknown protein (At5g20... 346 4e-094
emb|AX505548.1| Sequence 243 from Patent WO0216655 346 4e-094
gb|AY669789.1| Arabidopsis thaliana clone C105344 ARF7 (At5... 346 4e-094
ref|NM_180716.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 346 4e-094
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 191 5e-094
gb|AC025813.3|AC025813 Arabidopsis thaliana chromosome I cl... 191 6e-094
gb|AC069143.3|T29M8 Sequence of BAC T29M8 from Arabidopsis ... 191 6e-094
gb|AY008390.1| Arabidopsis thaliana ARF11/IAA22 gene, compl... 191 6e-094
gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15 142 3e-081
gb|AY008392.1| Arabidopsis thaliana ARF7 (ARF7) gene, compl... 142 3e-081
gb|AF186466.1|AF186466 Arabidopsis thaliana non-phototropic... 142 3e-081
ref|NM_180715.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 301 2e-080
ref|NM_122080.2| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 301 2e-080
gb|AF022368.1|AF022368 Arabidopsis thaliana BIPOSTO (BIP) m... 299 6e-080
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 191 2e-073
ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE ... 150 4e-052
gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRN... 150 4e-052
ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPON... 150 4e-052
gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1... 150 4e-052
ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE ... 145 2e-045
gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response ... 145 2e-045
gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5... 145 2e-045
ref|NM_101840.2| Arabidopsis thaliana MP (MONOPTEROS); tran... 121 5e-043
gb|BT002050.1| Arabidopsis thaliana transcription factor (A... 121 5e-043
gb|AF037229.1|AF037229 Arabidopsis thaliana transcription f... 121 5e-043
emb|AX505602.1| Sequence 297 from Patent WO0216655 121 5e-043
emb|AX651413.1| Sequence 208 from Patent WO03000898 121 5e-043
gb|AF334716.1| Arabidopsis thaliana clone C00027 (h) auxin ... 121 5e-043
gb|BT008805.1| Arabidopsis thaliana At1g19850 gene, complet... 121 5e-043
gb|U79557.1|U79557 Arabidopsis thaliana IAA24 (IAA24) mRNA,... 121 5e-043
gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BA... 62 5e-043
gb|AC007797.7|AC007797 Arabidopsis thaliana chromosome I BA... 85 1e-035
gb|AF037228.1|AF037228 Arabidopsis thaliana transcription f... 85 1e-035
gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10... 151 2e-035
gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R1... 151 2e-035
gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA... 151 2e-035
gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5... 151 2e-035
dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding ... 151 2e-035
dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding ... 151 2e-035
dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding ... 151 2e-035
dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding ... 151 2e-035
dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding ... 151 2e-035
dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding ... 151 2e-035
emb|CS165494.1| Sequence 2 from Patent WO2005085453 151 2e-035
emb|CS165497.1| Sequence 5 from Patent WO2005085453 151 2e-035
emb|CS165547.1| Sequence 55 from Patent WO2005085453 151 2e-035
emb|CS165548.1| Sequence 56 from Patent WO2005085453 151 2e-035
ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 151 2e-035
ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 151 2e-035
ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 151 2e-035
gb|BU635918.1|BU635918 042G09 Infected Arabidopsis Leaf Ara... 62 1e-033
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 142 1e-032
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 142 1e-032
gb|AF013466.1|AF013466 Arabidopsis thaliana auxin response ... 131 2e-029
gb|AF344313.1| Arabidopsis thaliana auxin response factor 4... 131 2e-029
gb|AY080832.1| Arabidopsis thaliana auxin response factor A... 131 2e-029
gb|AY113977.1| Arabidopsis thaliana auxin response factor A... 131 2e-029
ref|NM_125438.2| Arabidopsis thaliana ARF4 (AUXIN RESPONSE ... 131 2e-029
gb|AV528283.1|AV528283 AV528283 Arabidopsis thaliana aboveg... 77 2e-029
dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosom... 57 8e-029
gb|BU635530.1|BU635530 024G07 Infected Arabidopsis Leaf Ara... 120 5e-026
gb|U83245.1|ATU83245 Arabidopsis thaliana auxin response fa... 119 9e-026
gb|AY133723.1| Arabidopsis thaliana auxin response factor 1... 119 9e-026
emb|AX507306.1| Sequence 2001 from Patent WO0216655 119 9e-026
gb|BT002748.1| Arabidopsis thaliana clone C105458 auxin res... 119 9e-026
ref|NM_104668.2| Arabidopsis thaliana ARF1 (AUXIN RESPONSE ... 119 9e-026
ref|NM_179499.1| Arabidopsis thaliana ARF1 (AUXIN RESPONSE ... 119 9e-026
ref|NM_001036131.1| Arabidopsis thaliana ARF1 (AUXIN RESPON... 119 9e-026
gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response tr... 117 2e-025
gb|AF336917.1| Arabidopsis thaliana auxin response transcri... 117 2e-025
gb|AF360313.1| Arabidopsis thaliana auxin response transcri... 117 2e-025
gb|AY056365.1| Arabidopsis thaliana auxin response transcri... 117 2e-025
emb|AX506835.1| Sequence 1530 from Patent WO0216655 117 2e-025
emb|AX651787.1| Sequence 640 from Patent WO03000898 117 2e-025
ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcri... 117 2e-025
gb|BP561257.2|BP561257 BP561257 RAFL6 Arabidopsis thaliana ... 97 7e-022
>gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induced IAA22 mRNA, complete cds
Length = 3807
Score = 375 bits (814), Expect = e-103
Identities = 146/192 (76%), Positives = 164/192 (85%)
Frame = -1 / +3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M I AA HA ANS PFTIF+NPRA PSEFV+PLAKYNKALY QVSLG
Sbjct: 918 LSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 1097
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWE 267
MRFRM+FETED GVRRYMGT+TGI DLDP+RWK S WRNLQVGWDESTA +R +RVSIWE
Sbjct: 1098 MRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWE 1277
Query: 266 IEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPG 87
IEPV TPFYICPPPFFRPK P+Q GMPDDE ++E+AFKRAMPW+ +DF +KD Q+++FPG
Sbjct: 1278 IEPVITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPG 1457
Query: 86 LSLVQWMAMQQN 51
LSLVQWM+MQQN
Sbjct: 1458 LSLVQWMSMQQN 1493
Score = 247 bits (534), Expect = 2e-064
Identities = 115/191 (60%), Positives = 131/191 (68%)
Frame = +1 / -3
Query: 52 FCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGG 231
FCCI IH*TRL+PGN SF KSS GIALLKA S S SSSGIP CLG GLKNGG
Sbjct: 1492 FCCILIH*TRLKPGNIELCASFIPKSSPIQGIALLKAFSMSNSSSGIPGCLGYLGLKNGG 1313
Query: 232 GHI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTP 411
GH+* GV TGSISH++TR+ LS AVDSS PT*R R E FH +GS+S +PV VP+YL TP
Sbjct: 1312 GHM*KGVMTGSISHMDTRLGLSPAVDSSHPT*RLRHCEPFHLTGSRSLIPVTVPIYLRTP 1133
Query: 412 ESSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXALGL*KIVNGLLFXXXXXXXXXIXX 591
+SSVS I N IPRDT Y+ALLY AKG TNS+G ALGL K+V GLL I
Sbjct: 1132 QSSVSNIIRNLIPRDT*AYKALLYLAKGTTNSEGLALGLKKMVKGLLLALA*AAAASIPM 953
Query: 592 XMXXXXXXDDD 624
+ D++
Sbjct: 952 CILSLDMTDEE 920
Score = 157 bits (337), Expect = 3e-037
Identities = 80/195 (41%), Positives = 105/195 (53%)
Frame = +3 / -2
Query: 12 GRYSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWH 191
GR R S * +LLH+HPLN* + L + +V S P H SFES ++ IIWH
Sbjct: 1532 GRELRSSRT*QWIVLLHTHPLN*T*TREHRTLCVLHPKVFSHPRHCSFESIFHV*LIIWH 1353
Query: 192 SCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*V 371
L R L EKW Y+K + F+ PY + P+ FIP+ LK++P+ PS + +
Sbjct: 1352 PGLPRVLRSEKWRRTYVKRSYDGFDFPYGYSAWPISSC*FIPSYLKITPL*AFPSYRVKI 1173
Query: 372 ANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXT 551
N CD H+S+ P IL LK H ESHS +L + +VF *R+ K * CPWI E+ K T
Sbjct: 1172 TNTCDCTHISTNPTILSLKHHPESHS*RYLSV*GFVVFG*RNYKL*RTCPWIEEDGKRAT 993
Query: 552 ICSSMGXCCXDSXXH 596
I SM C H
Sbjct: 992 IGISMSCSCKYPNVH 948
>gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At1g19220) mRNA, complete
cds
Length = 3292
Score = 375 bits (814), Expect = e-103
Identities = 146/192 (76%), Positives = 164/192 (85%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M I AA HA ANS PFTIF+NPRA PSEFV+PLAKYNKALY QVSLG
Sbjct: 700 LSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 879
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWE 267
MRFRM+FETED GVRRYMGT+TGI DLDP+RWK S WRNLQVGWDESTA +R +RVSIWE
Sbjct: 880 MRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWE 1059
Query: 266 IEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPG 87
IEPV TPFYICPPPFFRPK P+Q GMPDDE ++E+AFKRAMPW+ +DF +KD Q+++FPG
Sbjct: 1060 IEPVITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPG 1239
Query: 86 LSLVQWMAMQQN 51
LSLVQWM+MQQN
Sbjct: 1240 LSLVQWMSMQQN 1275
Score = 247 bits (534), Expect = 2e-064
Identities = 115/191 (60%), Positives = 131/191 (68%)
Frame = +1 / -3
Query: 52 FCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGG 231
FCCI IH*TRL+PGN SF KSS GIALLKA S S SSSGIP CLG GLKNGG
Sbjct: 1274 FCCILIH*TRLKPGNIELCASFIPKSSPIQGIALLKAFSMSNSSSGIPGCLGYLGLKNGG 1095
Query: 232 GHI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTP 411
GH+* GV TGSISH++TR+ LS AVDSS PT*R R E FH +GS+S +PV VP+YL TP
Sbjct: 1094 GHM*KGVMTGSISHMDTRLGLSPAVDSSHPT*RLRHCEPFHLTGSRSLIPVTVPIYLRTP 915
Query: 412 ESSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXALGL*KIVNGLLFXXXXXXXXXIXX 591
+SSVS I N IPRDT Y+ALLY AKG TNS+G ALGL K+V GLL I
Sbjct: 914 QSSVSNIIRNLIPRDT*AYKALLYLAKGTTNSEGLALGLKKMVKGLLLALA*AAAASIPM 735
Query: 592 XMXXXXXXDDD 624
+ D++
Sbjct: 734 CILSLDMTDEE 702
Score = 157 bits (337), Expect = 3e-037
Identities = 80/195 (41%), Positives = 105/195 (53%)
Frame = +3 / -2
Query: 12 GRYSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWH 191
GR R S * +LLH+HPLN* + L + +V S P H SFES ++ IIWH
Sbjct: 1314 GRELRSSRT*QWIVLLHTHPLN*T*TREHRTLCVLHPKVFSHPRHCSFESIFHV*LIIWH 1135
Query: 192 SCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*V 371
L R L EKW Y+K + F+ PY + P+ FIP+ LK++P+ PS + +
Sbjct: 1134 PGLPRVLRSEKWRRTYVKRSYDGFDFPYGYSAWPISSC*FIPSYLKITPL*AFPSYRVKI 955
Query: 372 ANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXT 551
N CD H+S+ P IL LK H ESHS +L + +VF *R+ K * CPWI E+ K T
Sbjct: 954 TNTCDCTHISTNPTILSLKHHPESHS*RYLSV*GFVVFG*RNYKL*RTCPWIEEDGKRAT 775
Query: 552 ICSSMGXCCXDSXXH 596
I SM C H
Sbjct: 774 IGISMSCSCKYPNVH 730
>ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription factor AT1G19220 (ARF19)
mRNA, complete cds
Length = 3588
Score = 375 bits (814), Expect = e-103
Identities = 146/192 (76%), Positives = 164/192 (85%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M I AA HA ANS PFTIF+NPRA PSEFV+PLAKYNKALY QVSLG
Sbjct: 700 LSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 879
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWE 267
MRFRM+FETED GVRRYMGT+TGI DLDP+RWK S WRNLQVGWDESTA +R +RVSIWE
Sbjct: 880 MRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWE 1059
Query: 266 IEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPG 87
IEPV TPFYICPPPFFRPK P+Q GMPDDE ++E+AFKRAMPW+ +DF +KD Q+++FPG
Sbjct: 1060 IEPVITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPG 1239
Query: 86 LSLVQWMAMQQN 51
LSLVQWM+MQQN
Sbjct: 1240 LSLVQWMSMQQN 1275
Score = 247 bits (534), Expect = 2e-064
Identities = 115/191 (60%), Positives = 131/191 (68%)
Frame = +1 / -2
Query: 52 FCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGG 231
FCCI IH*TRL+PGN SF KSS GIALLKA S S SSSGIP CLG GLKNGG
Sbjct: 1274 FCCILIH*TRLKPGNIELCASFIPKSSPIQGIALLKAFSMSNSSSGIPGCLGYLGLKNGG 1095
Query: 232 GHI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTP 411
GH+* GV TGSISH++TR+ LS AVDSS PT*R R E FH +GS+S +PV VP+YL TP
Sbjct: 1094 GHM*KGVMTGSISHMDTRLGLSPAVDSSHPT*RLRHCEPFHLTGSRSLIPVTVPIYLRTP 915
Query: 412 ESSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXALGL*KIVNGLLFXXXXXXXXXIXX 591
+SSVS I N IPRDT Y+ALLY AKG TNS+G ALGL K+V GLL I
Sbjct: 914 QSSVSNIIRNLIPRDT*AYKALLYLAKGTTNSEGLALGLKKMVKGLLLALA*AAAASIPM 735
Query: 592 XMXXXXXXDDD 624
+ D++
Sbjct: 734 CILSLDMTDEE 702
Score = 157 bits (337), Expect = 3e-037
Identities = 80/195 (41%), Positives = 105/195 (53%)
Frame = +3 / -1
Query: 12 GRYSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWH 191
GR R S * +LLH+HPLN* + L + +V S P H SFES ++ IIWH
Sbjct: 1314 GRELRSSRT*QWIVLLHTHPLN*T*TREHRTLCVLHPKVFSHPRHCSFESIFHV*LIIWH 1135
Query: 192 SCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*V 371
L R L EKW Y+K + F+ PY + P+ FIP+ LK++P+ PS + +
Sbjct: 1134 PGLPRVLRSEKWRRTYVKRSYDGFDFPYGYSAWPISSC*FIPSYLKITPL*AFPSYRVKI 955
Query: 372 ANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXT 551
N CD H+S+ P IL LK H ESHS +L + +VF *R+ K * CPWI E+ K T
Sbjct: 954 TNTCDCTHISTNPTILSLKHHPESHS*RYLSV*GFVVFG*RNYKL*RTCPWIEEDGKRAT 775
Query: 552 ICSSMGXCCXDSXXH 596
I SM C H
Sbjct: 774 IGISMSCSCKYPNVH 730
>gb|AF042195.1|AF042195 Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete
cds
Length = 4044
Score = 346 bits (750), Expect = 4e-094
Identities = 133/191 (69%), Positives = 154/191 (80%)
Frame = -1 / +2
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M + AA HA AN+ PFTIFYNPRA P+EFV+PLAKY KA+Y QVSLG
Sbjct: 1241 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLG 1420
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWE 267
MRFRM+FETE+ GVRRYMGT+TGI DLDP+RWKNS WRNLQ+GWDES A +R +RVS+W+
Sbjct: 1421 MRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWD 1600
Query: 266 IEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPG 87
IEPV TPFYICPPPFFRP+ Q GMPDDE ++ESA KRAMPWL + +KD + +FPG
Sbjct: 1601 IEPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWLDNSLEMKDPSSTIFPG 1780
Query: 86 LSLVQWMAMQQ 54
LSLVQWM MQQ
Sbjct: 1781 LSLVQWMNMQQ 1813
Score = 226 bits (487), Expect = 7e-058
Identities = 106/166 (63%), Positives = 119/166 (71%)
Frame = +1 / -1
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGGG 234
CCI IH*T+LRPG SF +K +SHGIAL A S S SSSGIP C G KNGGG
Sbjct: 1812 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSSGIPGCPEKRGRKNGGG 1633
Query: 235 HI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPE 414
H+* GV TGS+S ETR+ LS A DSS P *RFR *EFFH +GS+S +PV VP+Y TP
Sbjct: 1632 HM*KGVKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPH 1453
Query: 415 SSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXALGL*KIVNGLL 552
SSVS ILNRIPR+T Y AL+Y AKG TNS G ALGL*K+V GLL
Sbjct: 1452 SSVSNIILNRIPRET*AYIALVYLAKGTTNSAGAALGL*KMVKGLL 1315
Score = 148 bits (318), Expect = 1e-034
Identities = 68/182 (37%), Positives = 99/182 (54%)
Frame = +3 / -3
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHSCLLRKLWPEKWW 230
+LLH HPLN* Q K +F I KPWH S + L++ IIWHS L RK EKW
Sbjct: 1816 LLLHIHPLN*TQTRKDSTRRVFHL*AIIKPWHCSLQCRLHVSLIIWHSRLSRKARSEKWR 1637
Query: 231 WAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP 410
Y++ N FN+P N+ P+ S IP+NLK+ P+R+ PS WI + + + H+ +
Sbjct: 1636 RTYVERS*NRFNVPN*NSTGPITSS*LIPSNLKIPPLRVFPSHWIKITDTGNCTHIPTNS 1457
Query: 411 *ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXTICSSMGXCCXDSX 590
LK HS+ H++G+L + + *R+ K + P ++EN + I SM C +S
Sbjct: 1456 TFFSLKYHSKPHTEGNLSVHRFGILG*RNHKLSRSSPRVVENGERTVISISMSCSCKNSD 1277
Query: 591 XH 596
H
Sbjct: 1276 VH 1271
>gb|AY080595.1| Arabidopsis thaliana unknown protein (At5g20730) mRNA, partial cds
Length = 3413
Score = 346 bits (750), Expect = 4e-094
Identities = 133/191 (69%), Positives = 154/191 (80%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M + AA HA AN+ PFTIFYNPRA P+EFV+PLAKY KA+Y QVSLG
Sbjct: 346 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLG 525
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWE 267
MRFRM+FETE+ GVRRYMGT+TGI DLDP+RWKNS WRNLQ+GWDES A +R +RVS+W+
Sbjct: 526 MRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWD 705
Query: 266 IEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPG 87
IEPV TPFYICPPPFFRP+ Q GMPDDE ++ESA KRAMPWL + +KD + +FPG
Sbjct: 706 IEPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWLDNSLEMKDPSSTIFPG 885
Query: 86 LSLVQWMAMQQ 54
LSLVQWM MQQ
Sbjct: 886 LSLVQWMNMQQ 918
Score = 226 bits (487), Expect = 7e-058
Identities = 106/166 (63%), Positives = 119/166 (71%)
Frame = +1 / -1
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGGG 234
CCI IH*T+LRPG SF +K +SHGIAL A S S SSSGIP C G KNGGG
Sbjct: 917 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSSGIPGCPEKRGRKNGGG 738
Query: 235 HI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPE 414
H+* GV TGS+S ETR+ LS A DSS P *RFR *EFFH +GS+S +PV VP+Y TP
Sbjct: 737 HM*KGVKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPH 558
Query: 415 SSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXALGL*KIVNGLL 552
SSVS ILNRIPR+T Y AL+Y AKG TNS G ALGL*K+V GLL
Sbjct: 557 SSVSNIILNRIPRET*AYIALVYLAKGTTNSAGAALGL*KMVKGLL 420
Score = 148 bits (318), Expect = 1e-034
Identities = 68/182 (37%), Positives = 99/182 (54%)
Frame = +3 / -3
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHSCLLRKLWPEKWW 230
+LLH HPLN* Q K +F I KPWH S + L++ IIWHS L RK EKW
Sbjct: 921 LLLHIHPLN*TQTRKDSTRRVFHL*AIIKPWHCSLQCRLHVSLIIWHSRLSRKARSEKWR 742
Query: 231 WAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP 410
Y++ N FN+P N+ P+ S IP+NLK+ P+R+ PS WI + + + H+ +
Sbjct: 741 RTYVERS*NRFNVPN*NSTGPITSS*LIPSNLKIPPLRVFPSHWIKITDTGNCTHIPTNS 562
Query: 411 *ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXTICSSMGXCCXDSX 590
LK HS+ H++G+L + + *R+ K + P ++EN + I SM C +S
Sbjct: 561 TFFSLKYHSKPHTEGNLSVHRFGILG*RNHKLSRSSPRVVENGERTVISISMSCSCKNSD 382
Query: 591 XH 596
H
Sbjct: 381 VH 376
>emb|AX505548.1| Sequence 243 from Patent WO0216655
Length = 3150
Score = 346 bits (750), Expect = 4e-094
Identities = 133/191 (69%), Positives = 154/191 (80%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M + AA HA AN+ PFTIFYNPRA P+EFV+PLAKY KA+Y QVSLG
Sbjct: 700 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLG 879
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWE 267
MRFRM+FETE+ GVRRYMGT+TGI DLDP+RWKNS WRNLQ+GWDES A +R +RVS+W+
Sbjct: 880 MRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWD 1059
Query: 266 IEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPG 87
IEPV TPFYICPPPFFRP+ Q GMPDDE ++ESA KRAMPWL + +KD + +FPG
Sbjct: 1060 IEPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWLDNSLEMKDPSSTIFPG 1239
Query: 86 LSLVQWMAMQQ 54
LSLVQWM MQQ
Sbjct: 1240 LSLVQWMNMQQ 1272
Score = 226 bits (487), Expect = 7e-058
Identities = 106/166 (63%), Positives = 119/166 (71%)
Frame = +1 / -2
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGGG 234
CCI IH*T+LRPG SF +K +SHGIAL A S S SSSGIP C G KNGGG
Sbjct: 1271 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSSGIPGCPEKRGRKNGGG 1092
Query: 235 HI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPE 414
H+* GV TGS+S ETR+ LS A DSS P *RFR *EFFH +GS+S +PV VP+Y TP
Sbjct: 1091 HM*KGVKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPH 912
Query: 415 SSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXALGL*KIVNGLL 552
SSVS ILNRIPR+T Y AL+Y AKG TNS G ALGL*K+V GLL
Sbjct: 911 SSVSNIILNRIPRET*AYIALVYLAKGTTNSAGAALGL*KMVKGLL 774
Score = 148 bits (318), Expect = 1e-034
Identities = 68/182 (37%), Positives = 99/182 (54%)
Frame = +3 / -1
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHSCLLRKLWPEKWW 230
+LLH HPLN* Q K +F I KPWH S + L++ IIWHS L RK EKW
Sbjct: 1275 LLLHIHPLN*TQTRKDSTRRVFHL*AIIKPWHCSLQCRLHVSLIIWHSRLSRKARSEKWR 1096
Query: 231 WAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP 410
Y++ N FN+P N+ P+ S IP+NLK+ P+R+ PS WI + + + H+ +
Sbjct: 1095 RTYVERS*NRFNVPN*NSTGPITSS*LIPSNLKIPPLRVFPSHWIKITDTGNCTHIPTNS 916
Query: 411 *ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXTICSSMGXCCXDSX 590
LK HS+ H++G+L + + *R+ K + P ++EN + I SM C +S
Sbjct: 915 TFFSLKYHSKPHTEGNLSVHRFGILG*RNHKLSRSSPRVVENGERTVISISMSCSCKNSD 736
Query: 591 XH 596
H
Sbjct: 735 VH 730
>gb|AY669789.1| Arabidopsis thaliana clone C105344 ARF7 (At5g20730) mRNA, complete
cds
Length = 3526
Score = 346 bits (750), Expect = 4e-094
Identities = 133/191 (69%), Positives = 154/191 (80%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M + AA HA AN+ PFTIFYNPRA P+EFV+PLAKY KA+Y QVSLG
Sbjct: 703 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLG 882
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWE 267
MRFRM+FETE+ GVRRYMGT+TGI DLDP+RWKNS WRNLQ+GWDES A +R +RVS+W+
Sbjct: 883 MRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWD 1062
Query: 266 IEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPG 87
IEPV TPFYICPPPFFRP+ Q GMPDDE ++ESA KRAMPWL + +KD + +FPG
Sbjct: 1063 IEPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWLDNSLEMKDPSSTIFPG 1242
Query: 86 LSLVQWMAMQQ 54
LSLVQWM MQQ
Sbjct: 1243 LSLVQWMNMQQ 1275
Score = 226 bits (487), Expect = 7e-058
Identities = 106/166 (63%), Positives = 119/166 (71%)
Frame = +1 / -3
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGGG 234
CCI IH*T+LRPG SF +K +SHGIAL A S S SSSGIP C G KNGGG
Sbjct: 1274 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSSGIPGCPEKRGRKNGGG 1095
Query: 235 HI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPE 414
H+* GV TGS+S ETR+ LS A DSS P *RFR *EFFH +GS+S +PV VP+Y TP
Sbjct: 1094 HM*KGVKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPH 915
Query: 415 SSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXALGL*KIVNGLL 552
SSVS ILNRIPR+T Y AL+Y AKG TNS G ALGL*K+V GLL
Sbjct: 914 SSVSNIILNRIPRET*AYIALVYLAKGTTNSAGAALGL*KMVKGLL 777
Score = 148 bits (318), Expect = 1e-034
Identities = 68/182 (37%), Positives = 99/182 (54%)
Frame = +3 / -2
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHSCLLRKLWPEKWW 230
+LLH HPLN* Q K +F I KPWH S + L++ IIWHS L RK EKW
Sbjct: 1278 LLLHIHPLN*TQTRKDSTRRVFHL*AIIKPWHCSLQCRLHVSLIIWHSRLSRKARSEKWR 1099
Query: 231 WAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP 410
Y++ N FN+P N+ P+ S IP+NLK+ P+R+ PS WI + + + H+ +
Sbjct: 1098 RTYVERS*NRFNVPN*NSTGPITSS*LIPSNLKIPPLRVFPSHWIKITDTGNCTHIPTNS 919
Query: 411 *ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXTICSSMGXCCXDSX 590
LK HS+ H++G+L + + *R+ K + P ++EN + I SM C +S
Sbjct: 918 TFFSLKYHSKPHTEGNLSVHRFGILG*RNHKLSRSSPRVVENGERTVISISMSCSCKNSD 739
Query: 591 XH 596
H
Sbjct: 738 VH 733
>ref|NM_180716.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
factor AT5G20730 (NPH4) transcript variant AT5G20730.2
mRNA, complete cds
Length = 4557
Score = 346 bits (750), Expect = 4e-094
Identities = 133/191 (69%), Positives = 154/191 (80%)
Frame = -1 / +2
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M + AA HA AN+ PFTIFYNPRA P+EFV+PLAKY KA+Y QVSLG
Sbjct: 1241 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLG 1420
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWE 267
MRFRM+FETE+ GVRRYMGT+TGI DLDP+RWKNS WRNLQ+GWDES A +R +RVS+W+
Sbjct: 1421 MRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWD 1600
Query: 266 IEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPG 87
IEPV TPFYICPPPFFRP+ Q GMPDDE ++ESA KRAMPWL + +KD + +FPG
Sbjct: 1601 IEPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWLDNSLEMKDPSSTIFPG 1780
Query: 86 LSLVQWMAMQQ 54
LSLVQWM MQQ
Sbjct: 1781 LSLVQWMNMQQ 1813
Score = 226 bits (487), Expect = 7e-058
Identities = 106/166 (63%), Positives = 119/166 (71%)
Frame = +1 / -1
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGGG 234
CCI IH*T+LRPG SF +K +SHGIAL A S S SSSGIP C G KNGGG
Sbjct: 1812 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSSGIPGCPEKRGRKNGGG 1633
Query: 235 HI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPE 414
H+* GV TGS+S ETR+ LS A DSS P *RFR *EFFH +GS+S +PV VP+Y TP
Sbjct: 1632 HM*KGVKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPH 1453
Query: 415 SSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXALGL*KIVNGLL 552
SSVS ILNRIPR+T Y AL+Y AKG TNS G ALGL*K+V GLL
Sbjct: 1452 SSVSNIILNRIPRET*AYIALVYLAKGTTNSAGAALGL*KMVKGLL 1315
Score = 148 bits (318), Expect = 1e-034
Identities = 68/182 (37%), Positives = 99/182 (54%)
Frame = +3 / -3
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHSCLLRKLWPEKWW 230
+LLH HPLN* Q K +F I KPWH S + L++ IIWHS L RK EKW
Sbjct: 1816 LLLHIHPLN*TQTRKDSTRRVFHL*AIIKPWHCSLQCRLHVSLIIWHSRLSRKARSEKWR 1637
Query: 231 WAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP 410
Y++ N FN+P N+ P+ S IP+NLK+ P+R+ PS WI + + + H+ +
Sbjct: 1636 RTYVERS*NRFNVPN*NSTGPITSS*LIPSNLKIPPLRVFPSHWIKITDTGNCTHIPTNS 1457
Query: 411 *ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXTICSSMGXCCXDSX 590
LK HS+ H++G+L + + *R+ K + P ++EN + I SM C +S
Sbjct: 1456 TFFSLKYHSKPHTEGNLSVHRFGILG*RNHKLSRSSPRVVENGERTVISISMSCSCKNSD 1277
Query: 591 XH 596
H
Sbjct: 1276 VH 1271
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 191 bits (411), Expect(3) = 5e-094
Identities = 78/102 (76%), Positives = 83/102 (81%)
Frame = -1 / -3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M I AA HA ANS PFTIF+NPRA PSEFV+PLAKYNKALY QVSLG
Sbjct: 6631105 LSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 6630926
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQV 321
MRFRM+FETED GVRRYMGT+TGI DLDP+RWK S WRNLQV
Sbjct: 6630925 MRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQV 6630800
Score = 108 bits (231), Expect(3) = 1e-055
Identities = 52/101 (51%), Positives = 63/101 (62%)
Frame = +1 / +3
Query: 322 T*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKGMT 501
T*R R E FH +GS+S +PV VP+YL TP+SSVS I N IPRDT Y+ALLY AKG T
Sbjct: 6630801 T*RLRHCEPFHLTGSRSLIPVTVPIYLRTPQSSVSNIIRNLIPRDT*AYKALLYLAKGTT 6630980
Query: 502 NSDGXALGL*KIVNGLLFXXXXXXXXXIXXXMXXXXXXDDD 624
NS+G ALGL K+V GLL I + D++
Sbjct: 6630981 NSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEE 6631103
Score = 106 bits (227), Expect(3) = 5e-094
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -1 / -2
Query: 326 QVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMPDD 180
QVGWDESTA +R +RVSIWEIEPV TPFYICPPPFFRPK P+Q GMP +
Sbjct: 6630728 QVGWDESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQPGMPGE 6630582
Score = 88.1 bits (186), Expect(3) = 5e-094
Identities = 31/45 (68%), Positives = 41/45 (91%)
Frame = -1 / -3
Query: 185 DDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQN 51
DDE ++E+AFKRAMPW+ +DF +KD Q+++FPGLSLVQWM+MQQN
Sbjct: 6630505 DDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSLVQWMSMQQN 6630371
Score = 85.4 bits (180), Expect(4) = 9e-036
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = -1 / +1
Query: 407 VRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
V RYMGTI GI DLDPLRW S WRNLQV WDE +++ TRVS W+IE
Sbjct: 6889039 VFRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIE 6889185
Score = 85.4 bits (180), Expect(3) = 1e-055
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = +1 / +1
Query: 178 SSSGIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT 324
+S GIP CLG GLKNGGGH+* GV TGSISH++TR+ LS AVDSS PT
Sbjct: 6630580 NSPGIPGCLGYLGLKNGGGHM*KGVMTGSISHMDTRLGLSPAVDSSHPT 6630726
Score = 83.5 bits (176), Expect(3) = 2e-028
Identities = 39/91 (42%), Positives = 51/91 (56%)
Frame = +3 / +2
Query: 324 LKVSPMRILPSQWI*VANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC*RDDK 503
LK++P+ PS + + N CD H+S+ P IL LK H ESHS +L + +VF *R+ K
Sbjct: 6630803 LKITPL*AFPSYRVKITNTCDCTHISTNPTILSLKHHPESHS*RYLSV*GFVVFG*RNYK 6630982
Query: 504 F*WACPWIIENSKWXTICSSMGXCCXDSXXH 596
* CPWI E+ K TI SM C H
Sbjct: 6630983 L*RTCPWIEEDGKRATIGISMSCSCKYPNVH 6631075
Score = 63.4 bits (132), Expect(3) = 1e-055
Identities = 30/45 (66%), Positives = 31/45 (68%)
Frame = +1 / +3
Query: 52 FCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
FCCI IH*TRL+PGN SF KSS GIALLKA S S SSS
Sbjct: 6630372 FCCILIH*TRLKPGNIELCASFIPKSSPIQGIALLKAFSMSNSSS 6630506
Score = 62.0 bits (129), Expect(5) = 4e-043
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = -1 / -1
Query: 419 EDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQV 321
E S V RYMGTITGI DLDP RW NSHWR+++V
Sbjct: 10697133 ESSFVVRYMGTITGICDLDPTRWANSHWRSVKV 10697035
Score = 60.2 bits (125), Expect(5) = 4e-043
Identities = 27/52 (51%), Positives = 32/52 (61%)
Frame = -1 / -3
Query: 341 HWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
H +QVGWDESTA ER+ RVS+WEIEP+ T P R K P G+P
Sbjct: 10696963 HLIKMQVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLP 10696808
Score = 46.0 bits (94), Expect(5) = 4e-043
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = -1 / -2
Query: 467 YTQVSLGMRFRMLFETEDSGVRR 399
+T+VS+GMRFRMLFETE+S VRR
Sbjct: 10697261 HTRVSVGMRFRMLFETEESSVRR 10697193
Score = 45.1 bits (92), Expect(4) = 9e-036
Identities = 19/36 (52%), Positives = 20/36 (55%)
Frame = -1 / +2
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
L SS S M + AA HA AN PF IFYNPR
Sbjct: 6888650 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPR 6888757
Score = 42.3 bits (86), Expect(3) = 2e-028
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +3 / +2
Query: 12 GRYSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFII 185
GR R S * +LLH+HPLN* + L + +V S P H SFES ++ II
Sbjct: 6630332 GRELRSSRT*QWIVLLHTHPLN*T*TREHRTLCVLHPKVFSHPRHCSFESIFHV*LII 6630505
Score = 42.3 bits (86), Expect(5) = 4e-043
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -1 / -2
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
+ SS S M + AA HAAA + FTIFYNPR
Sbjct: 10697504 MPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPR 10697397
Score = 41.4 bits (84), Expect(4) = 9e-036
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = -1 / +3
Query: 464 TQVSLGMRFRMLFETEDSGVRR 399
+Q+S+GMRF M+FETEDSG RR
Sbjct: 6888897 SQLSVGMRFGMMFETEDSGKRR 6888962
Score = 39.6 bits (80), Expect(3) = 2e-028
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3 / +3
Query: 180 IIWHSCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNL 326
+ WH L R L EKW Y+K + F+ PY + P+ FIP+ L
Sbjct: 6630582 LTWHPGLPRVLRSEKWRRTYVKRSYDGFDFPYGYSAWPISSC*FIPSYL 6630728
Score = 39.6 bits (80), Expect(5) = 4e-043
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -1 / -2
Query: 521 RAXPSEFVIPLAKYNKALY 465
RA PSEFVIPLAKY KA+Y
Sbjct: 10697318 RASPSEFVIPLAKYVKAVY 10697262
Score = 35.9 bits (72), Expect(4) = 9e-036
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / +3
Query: 521 RAXPSEFVIPLAKYNKAL 468
RA P+EFVIPLAKY KA+
Sbjct: 6888837 RACPAEFVIPLAKYRKAI 6888890
>gb|AC025813.3|AC025813 Arabidopsis thaliana chromosome I clone F15H4, *** SEQUENCING IN
PROGRESS ***
Length = 91738
Score = 191 bits (411), Expect(3) = 6e-094
Identities = 78/102 (76%), Positives = 83/102 (81%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M I AA HA ANS PFTIF+NPRA PSEFV+PLAKYNKALY QVSLG
Sbjct: 30124 LSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 30303
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQV 321
MRFRM+FETED GVRRYMGT+TGI DLDP+RWK S WRNLQV
Sbjct: 30304 MRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQV 30429
Score = 108 bits (231), Expect(3) = 1e-055
Identities = 52/101 (51%), Positives = 63/101 (62%)
Frame = +1 / -3
Query: 322 T*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKGMT 501
T*R R E FH +GS+S +PV VP+YL TP+SSVS I N IPRDT Y+ALLY AKG T
Sbjct: 30428 T*RLRHCEPFHLTGSRSLIPVTVPIYLRTPQSSVSNIIRNLIPRDT*AYKALLYLAKGTT 30249
Query: 502 NSDGXALGL*KIVNGLLFXXXXXXXXXIXXXMXXXXXXDDD 624
NS+G ALGL K+V GLL I + D++
Sbjct: 30248 NSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEE 30126
Score = 106 bits (227), Expect(3) = 6e-094
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -1 / +3
Query: 326 QVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMPDD 180
QVGWDESTA +R +RVSIWEIEPV TPFYICPPPFFRPK P+Q GMP +
Sbjct: 30501 QVGWDESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQPGMPGE 30647
Score = 88.1 bits (186), Expect(3) = 6e-094
Identities = 31/45 (68%), Positives = 41/45 (91%)
Frame = -1 / +1
Query: 185 DDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQN 51
DDE ++E+AFKRAMPW+ +DF +KD Q+++FPGLSLVQWM+MQQN
Sbjct: 30724 DDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSLVQWMSMQQN 30858
Score = 85.4 bits (180), Expect(3) = 1e-055
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = +1 / -1
Query: 178 SSSGIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT 324
+S GIP CLG GLKNGGGH+* GV TGSISH++TR+ LS AVDSS PT
Sbjct: 30649 NSPGIPGCLGYLGLKNGGGHM*KGVMTGSISHMDTRLGLSPAVDSSHPT 30503
Score = 83.5 bits (176), Expect(3) = 2e-028
Identities = 39/91 (42%), Positives = 51/91 (56%)
Frame = +3 / -2
Query: 324 LKVSPMRILPSQWI*VANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC*RDDK 503
LK++P+ PS + + N CD H+S+ P IL LK H ESHS +L + +VF *R+ K
Sbjct: 30426 LKITPL*AFPSYRVKITNTCDCTHISTNPTILSLKHHPESHS*RYLSV*GFVVFG*RNYK 30247
Query: 504 F*WACPWIIENSKWXTICSSMGXCCXDSXXH 596
* CPWI E+ K TI SM C H
Sbjct: 30246 L*RTCPWIEEDGKRATIGISMSCSCKYPNVH 30154
Score = 63.4 bits (132), Expect(3) = 1e-055
Identities = 30/45 (66%), Positives = 31/45 (68%)
Frame = +1 / -3
Query: 52 FCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
FCCI IH*TRL+PGN SF KSS GIALLKA S S SSS
Sbjct: 30857 FCCILIH*TRLKPGNIELCASFIPKSSPIQGIALLKAFSMSNSSS 30723
Score = 42.3 bits (86), Expect(3) = 2e-028
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +3 / -2
Query: 12 GRYSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFII 185
GR R S * +LLH+HPLN* + L + +V S P H SFES ++ II
Sbjct: 30897 GRELRSSRT*QWIVLLHTHPLN*T*TREHRTLCVLHPKVFSHPRHCSFESIFHV*LII 30724
Score = 39.6 bits (80), Expect(3) = 2e-028
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3 / -3
Query: 180 IIWHSCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNL 326
+ WH L R L EKW Y+K + F+ PY + P+ FIP+ L
Sbjct: 30647 LTWHPGLPRVLRSEKWRRTYVKRSYDGFDFPYGYSAWPISSC*FIPSYL 30501
>gb|AC069143.3|T29M8 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 58738
Score = 191 bits (411), Expect(3) = 6e-094
Identities = 78/102 (76%), Positives = 83/102 (81%)
Frame = -1 / -2
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M I AA HA ANS PFTIF+NPRA PSEFV+PLAKYNKALY QVSLG
Sbjct: 20724 LSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 20545
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQV 321
MRFRM+FETED GVRRYMGT+TGI DLDP+RWK S WRNLQV
Sbjct: 20544 MRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQV 20419
Score = 108 bits (231), Expect(3) = 1e-055
Identities = 52/101 (51%), Positives = 63/101 (62%)
Frame = +1 / +2
Query: 322 T*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKGMT 501
T*R R E FH +GS+S +PV VP+YL TP+SSVS I N IPRDT Y+ALLY AKG T
Sbjct: 20420 T*RLRHCEPFHLTGSRSLIPVTVPIYLRTPQSSVSNIIRNLIPRDT*AYKALLYLAKGTT 20599
Query: 502 NSDGXALGL*KIVNGLLFXXXXXXXXXIXXXMXXXXXXDDD 624
NS+G ALGL K+V GLL I + D++
Sbjct: 20600 NSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEE 20722
Score = 106 bits (227), Expect(3) = 6e-094
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -1 / -1
Query: 326 QVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMPDD 180
QVGWDESTA +R +RVSIWEIEPV TPFYICPPPFFRPK P+Q GMP +
Sbjct: 20347 QVGWDESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQPGMPGE 20201
Score = 88.1 bits (186), Expect(3) = 6e-094
Identities = 31/45 (68%), Positives = 41/45 (91%)
Frame = -1 / -2
Query: 185 DDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQN 51
DDE ++E+AFKRAMPW+ +DF +KD Q+++FPGLSLVQWM+MQQN
Sbjct: 20124 DDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSLVQWMSMQQN 19990
Score = 85.4 bits (180), Expect(3) = 1e-055
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = +1 / +3
Query: 178 SSSGIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT 324
+S GIP CLG GLKNGGGH+* GV TGSISH++TR+ LS AVDSS PT
Sbjct: 20199 NSPGIPGCLGYLGLKNGGGHM*KGVMTGSISHMDTRLGLSPAVDSSHPT 20345
Score = 83.5 bits (176), Expect(3) = 2e-028
Identities = 39/91 (42%), Positives = 51/91 (56%)
Frame = +3 / +1
Query: 324 LKVSPMRILPSQWI*VANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC*RDDK 503
LK++P+ PS + + N CD H+S+ P IL LK H ESHS +L + +VF *R+ K
Sbjct: 20422 LKITPL*AFPSYRVKITNTCDCTHISTNPTILSLKHHPESHS*RYLSV*GFVVFG*RNYK 20601
Query: 504 F*WACPWIIENSKWXTICSSMGXCCXDSXXH 596
* CPWI E+ K TI SM C H
Sbjct: 20602 L*RTCPWIEEDGKRATIGISMSCSCKYPNVH 20694
Score = 63.4 bits (132), Expect(3) = 1e-055
Identities = 30/45 (66%), Positives = 31/45 (68%)
Frame = +1 / +2
Query: 52 FCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
FCCI IH*TRL+PGN SF KSS GIALLKA S S SSS
Sbjct: 19991 FCCILIH*TRLKPGNIELCASFIPKSSPIQGIALLKAFSMSNSSS 20125
Score = 42.3 bits (86), Expect(3) = 2e-028
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +3 / +1
Query: 12 GRYSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFII 185
GR R S * +LLH+HPLN* + L + +V S P H SFES ++ II
Sbjct: 19951 GRELRSSRT*QWIVLLHTHPLN*T*TREHRTLCVLHPKVFSHPRHCSFESIFHV*LII 20124
Score = 39.6 bits (80), Expect(3) = 2e-028
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3 / +2
Query: 180 IIWHSCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNL 326
+ WH L R L EKW Y+K + F+ PY + P+ FIP+ L
Sbjct: 20201 LTWHPGLPRVLRSEKWRRTYVKRSYDGFDFPYGYSAWPISSC*FIPSYL 20347
>gb|AY008390.1| Arabidopsis thaliana ARF11/IAA22 gene, complete cds
Length = 7371
Score = 191 bits (411), Expect(3) = 6e-094
Identities = 78/102 (76%), Positives = 83/102 (81%)
Frame = -1 / +2
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M I AA HA ANS PFTIF+NPRA PSEFV+PLAKYNKALY QVSLG
Sbjct: 3050 LSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 3229
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQV 321
MRFRM+FETED GVRRYMGT+TGI DLDP+RWK S WRNLQV
Sbjct: 3230 MRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQV 3355
Score = 108 bits (231), Expect(3) = 1e-055
Identities = 52/101 (51%), Positives = 63/101 (62%)
Frame = +1 / -1
Query: 322 T*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKGMT 501
T*R R E FH +GS+S +PV VP+YL TP+SSVS I N IPRDT Y+ALLY AKG T
Sbjct: 3354 T*RLRHCEPFHLTGSRSLIPVTVPIYLRTPQSSVSNIIRNLIPRDT*AYKALLYLAKGTT 3175
Query: 502 NSDGXALGL*KIVNGLLFXXXXXXXXXIXXXMXXXXXXDDD 624
NS+G ALGL K+V GLL I + D++
Sbjct: 3174 NSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEE 3052
Score = 106 bits (227), Expect(3) = 6e-094
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -1 / +1
Query: 326 QVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMPDD 180
QVGWDESTA +R +RVSIWEIEPV TPFYICPPPFFRPK P+Q GMP +
Sbjct: 3427 QVGWDESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQPGMPGE 3573
Score = 88.1 bits (186), Expect(3) = 6e-094
Identities = 31/45 (68%), Positives = 41/45 (91%)
Frame = -1 / +2
Query: 185 DDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQN 51
DDE ++E+AFKRAMPW+ +DF +KD Q+++FPGLSLVQWM+MQQN
Sbjct: 3650 DDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSLVQWMSMQQN 3784
Score = 85.4 bits (180), Expect(3) = 1e-055
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = +1 / -2
Query: 178 SSSGIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT 324
+S GIP CLG GLKNGGGH+* GV TGSISH++TR+ LS AVDSS PT
Sbjct: 3575 NSPGIPGCLGYLGLKNGGGHM*KGVMTGSISHMDTRLGLSPAVDSSHPT 3429
Score = 83.5 bits (176), Expect(3) = 2e-028
Identities = 39/91 (42%), Positives = 51/91 (56%)
Frame = +3 / -3
Query: 324 LKVSPMRILPSQWI*VANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC*RDDK 503
LK++P+ PS + + N CD H+S+ P IL LK H ESHS +L + +VF *R+ K
Sbjct: 3352 LKITPL*AFPSYRVKITNTCDCTHISTNPTILSLKHHPESHS*RYLSV*GFVVFG*RNYK 3173
Query: 504 F*WACPWIIENSKWXTICSSMGXCCXDSXXH 596
* CPWI E+ K TI SM C H
Sbjct: 3172 L*RTCPWIEEDGKRATIGISMSCSCKYPNVH 3080
Score = 63.4 bits (132), Expect(3) = 1e-055
Identities = 30/45 (66%), Positives = 31/45 (68%)
Frame = +1 / -1
Query: 52 FCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
FCCI IH*TRL+PGN SF KSS GIALLKA S S SSS
Sbjct: 3783 FCCILIH*TRLKPGNIELCASFIPKSSPIQGIALLKAFSMSNSSS 3649
Score = 42.3 bits (86), Expect(3) = 2e-028
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +3 / -3
Query: 12 GRYSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFII 185
GR R S * +LLH+HPLN* + L + +V S P H SFES ++ II
Sbjct: 3823 GRELRSSRT*QWIVLLHTHPLN*T*TREHRTLCVLHPKVFSHPRHCSFESIFHV*LII 3650
Score = 39.6 bits (80), Expect(3) = 2e-028
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3 / -1
Query: 180 IIWHSCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNL 326
+ WH L R L EKW Y+K + F+ PY + P+ FIP+ L
Sbjct: 3573 LTWHPGLPRVLRSEKWRRTYVKRSYDGFDFPYGYSAWPISSC*FIPSYL 3427
>gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15
Length = 89490
Score = 142 bits (304), Expect(4) = 3e-081
Identities = 54/67 (80%), Positives = 61/67 (91%)
Frame = -1 / -1
Query: 521 RAXPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNS 342
RA P+EFV+PLAKY KA+Y QVSLGMRFRM+FETE+ GVRRYMGT+TGI DLDP+RWKNS
Sbjct: 52713 RAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNS 52534
Query: 341 HWRNLQV 321
WRNLQV
Sbjct: 52533 QWRNLQV 52513
Score = 101 bits (215), Expect(3) = 1e-044
Identities = 46/69 (66%), Positives = 52/69 (75%)
Frame = +1 / +2
Query: 316 QPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKG 495
Q T*RFR *EFFH +GS+S +PV VP+Y TP SSVS ILNRIPR+T Y AL+Y AKG
Sbjct: 52508 QTT*RFRH*EFFHLTGSRSLIPVTVPIYRRTPHSSVSNIILNRIPRET*AYIALVYLAKG 52687
Query: 496 MTNSDGXAL 522
TNS G AL
Sbjct: 52688 TTNSAGAAL 52714
Score = 95.5 bits (202), Expect(4) = 3e-081
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = -1 / -3
Query: 329 LQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
L++GWDES A +R +RVS+W+IEPV TPFYICPPPFFRP+ Q GMP
Sbjct: 52423 LKIGWDESAAGDRPSRVSVWDIEPVLTPFYICPPPFFRPRFSGQPGMP 52280
Score = 74.4 bits (156), Expect(4) = 3e-081
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = -1 / -2
Query: 191 MPDDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQ 54
+ DDE ++ESA KRAMPWL + +KD + +FPGLSLVQWM MQQ
Sbjct: 52208 LADDETDMESALKRAMPWLDNSLEMKDPSSTIFPGLSLVQWMNMQQ 52071
Score = 64.8 bits (135), Expect(3) = 1e-044
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = +1 / +3
Query: 187 GIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQP 321
GIP C G KNGGGH+* GV TGS+S ETR+ LS A DSS P
Sbjct: 52281 GIPGCPEKRGRKNGGGHM*KGVKTGSMSQTETRLGLSPAADSSHP 52415
Score = 54.2 bits (112), Expect(3) = 1e-044
Identities = 26/44 (59%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
CCI IH*T+LRPG SF +K +SHGIAL A S S SSS
Sbjct: 52072 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSS 52203
Score = 50.1 bits (103), Expect(4) = 3e-081
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -1 / -3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
LSSS S M + AA HA AN+ PFTIFYNPR
Sbjct: 52912 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPR 52805
Score = 49.6 bits (102), Expect(3) = 5e-021
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3 / +1
Query: 309 FIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC 488
F LK+ P+R+ PS WI + + + H+ + LK HS+ H++G+L + +
Sbjct: 52501 FTSNYLKIPPLRVFPSHWIKITDTGNCTHIPTNSTFFSLKYHSKPHTEGNLSVHRFGILG 52680
Query: 489 *RDDK 503
*R+ K
Sbjct: 52681 *RNHK 52695
Score = 46.9 bits (96), Expect(3) = 5e-021
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3 / +2
Query: 186 WHSCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNL 326
WHS L RK EKW Y++ N FN+P N+ P+ S IP+NL
Sbjct: 52280 WHSRLSRKARSEKWRRTYVERS*NRFNVPN*NSTGPITSS*LIPSNL 52420
Score = 43.7 bits (89), Expect(3) = 5e-021
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +3 / +3
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHS 194
+LLH HPLN* Q K +F I KPWH S + L++ II S
Sbjct: 52068 LLLHIHPLN*TQTRKDSTRRVFHL*AIIKPWHCSLQCRLHVSLIICKS 52211
>gb|AY008392.1| Arabidopsis thaliana ARF7 (ARF7) gene, complete cds
Length = 7703
Score = 142 bits (304), Expect(4) = 3e-081
Identities = 54/67 (80%), Positives = 61/67 (91%)
Frame = -1 / +2
Query: 521 RAXPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNS 342
RA P+EFV+PLAKY KA+Y QVSLGMRFRM+FETE+ GVRRYMGT+TGI DLDP+RWKNS
Sbjct: 4073 RAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNS 4252
Query: 341 HWRNLQV 321
WRNLQV
Sbjct: 4253 QWRNLQV 4273
Score = 101 bits (215), Expect(3) = 1e-044
Identities = 46/69 (66%), Positives = 52/69 (75%)
Frame = +1 / -3
Query: 316 QPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKG 495
Q T*RFR *EFFH +GS+S +PV VP+Y TP SSVS ILNRIPR+T Y AL+Y AKG
Sbjct: 4278 QTT*RFRH*EFFHLTGSRSLIPVTVPIYRRTPHSSVSNIILNRIPRET*AYIALVYLAKG 4099
Query: 496 MTNSDGXAL 522
TNS G AL
Sbjct: 4098 TTNSAGAAL 4072
Score = 95.5 bits (202), Expect(4) = 3e-081
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = -1 / +1
Query: 329 LQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
L++GWDES A +R +RVS+W+IEPV TPFYICPPPFFRP+ Q GMP
Sbjct: 4363 LKIGWDESAAGDRPSRVSVWDIEPVLTPFYICPPPFFRPRFSGQPGMP 4506
Score = 74.4 bits (156), Expect(4) = 3e-081
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = -1 / +3
Query: 191 MPDDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQ 54
+ DDE ++ESA KRAMPWL + +KD + +FPGLSLVQWM MQQ
Sbjct: 4578 LADDETDMESALKRAMPWLDNSLEMKDPSSTIFPGLSLVQWMNMQQ 4715
Score = 64.8 bits (135), Expect(3) = 1e-044
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = +1 / -1
Query: 187 GIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQP 321
GIP C G KNGGGH+* GV TGS+S ETR+ LS A DSS P
Sbjct: 4505 GIPGCPEKRGRKNGGGHM*KGVKTGSMSQTETRLGLSPAADSSHP 4371
Score = 54.2 bits (112), Expect(3) = 1e-044
Identities = 26/44 (59%), Positives = 29/44 (65%)
Frame = +1 / -2
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
CCI IH*T+LRPG SF +K +SHGIAL A S S SSS
Sbjct: 4714 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSS 4583
Score = 50.1 bits (103), Expect(4) = 3e-081
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
LSSS S M + AA HA AN+ PFTIFYNPR
Sbjct: 3874 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPR 3981
Score = 49.6 bits (102), Expect(3) = 5e-021
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3 / -2
Query: 309 FIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC 488
F LK+ P+R+ PS WI + + + H+ + LK HS+ H++G+L + +
Sbjct: 4285 FTSNYLKIPPLRVFPSHWIKITDTGNCTHIPTNSTFFSLKYHSKPHTEGNLSVHRFGILG 4106
Query: 489 *RDDK 503
*R+ K
Sbjct: 4105 *RNHK 4091
Score = 46.9 bits (96), Expect(3) = 5e-021
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3 / -3
Query: 186 WHSCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNL 326
WHS L RK EKW Y++ N FN+P N+ P+ S IP+NL
Sbjct: 4506 WHSRLSRKARSEKWRRTYVERS*NRFNVPN*NSTGPITSS*LIPSNL 4366
Score = 43.7 bits (89), Expect(3) = 5e-021
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +3 / -1
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHS 194
+LLH HPLN* Q K +F I KPWH S + L++ II S
Sbjct: 4718 LLLHIHPLN*TQTRKDSTRRVFHL*AIIKPWHCSLQCRLHVSLIICKS 4575
>gb|AF186466.1|AF186466 Arabidopsis thaliana non-phototropic hypocotyl 4 (NPH4) gene,
complete cds
Length = 7317
Score = 142 bits (304), Expect(4) = 3e-081
Identities = 54/67 (80%), Positives = 61/67 (91%)
Frame = -1 / +3
Query: 521 RAXPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNS 342
RA P+EFV+PLAKY KA+Y QVSLGMRFRM+FETE+ GVRRYMGT+TGI DLDP+RWKNS
Sbjct: 4068 RAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNS 4247
Query: 341 HWRNLQV 321
WRNLQV
Sbjct: 4248 QWRNLQV 4268
Score = 101 bits (215), Expect(3) = 1e-044
Identities = 46/69 (66%), Positives = 52/69 (75%)
Frame = +1 / -3
Query: 316 QPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKG 495
Q T*RFR *EFFH +GS+S +PV VP+Y TP SSVS ILNRIPR+T Y AL+Y AKG
Sbjct: 4273 QTT*RFRH*EFFHLTGSRSLIPVTVPIYRRTPHSSVSNIILNRIPRET*AYIALVYLAKG 4094
Query: 496 MTNSDGXAL 522
TNS G AL
Sbjct: 4093 TTNSAGAAL 4067
Score = 95.5 bits (202), Expect(4) = 3e-081
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = -1 / +2
Query: 329 LQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
L++GWDES A +R +RVS+W+IEPV TPFYICPPPFFRP+ Q GMP
Sbjct: 4358 LKIGWDESAAGDRPSRVSVWDIEPVLTPFYICPPPFFRPRFSGQPGMP 4501
Score = 74.4 bits (156), Expect(4) = 3e-081
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = -1 / +1
Query: 191 MPDDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQ 54
+ DDE ++ESA KRAMPWL + +KD + +FPGLSLVQWM MQQ
Sbjct: 4573 LADDETDMESALKRAMPWLDNSLEMKDPSSTIFPGLSLVQWMNMQQ 4710
Score = 64.8 bits (135), Expect(3) = 1e-044
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = +1 / -1
Query: 187 GIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQP 321
GIP C G KNGGGH+* GV TGS+S ETR+ LS A DSS P
Sbjct: 4500 GIPGCPEKRGRKNGGGHM*KGVKTGSMSQTETRLGLSPAADSSHP 4366
Score = 54.2 bits (112), Expect(3) = 1e-044
Identities = 26/44 (59%), Positives = 29/44 (65%)
Frame = +1 / -2
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
CCI IH*T+LRPG SF +K +SHGIAL A S S SSS
Sbjct: 4709 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSS 4578
Score = 50.1 bits (103), Expect(4) = 3e-081
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -1 / +2
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
LSSS S M + AA HA AN+ PFTIFYNPR
Sbjct: 3869 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPR 3976
Score = 49.6 bits (102), Expect(3) = 5e-021
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3 / -2
Query: 309 FIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC 488
F LK+ P+R+ PS WI + + + H+ + LK HS+ H++G+L + +
Sbjct: 4280 FTSNYLKIPPLRVFPSHWIKITDTGNCTHIPTNSTFFSLKYHSKPHTEGNLSVHRFGILG 4101
Query: 489 *RDDK 503
*R+ K
Sbjct: 4100 *RNHK 4086
Score = 46.9 bits (96), Expect(3) = 5e-021
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3 / -3
Query: 186 WHSCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNL 326
WHS L RK EKW Y++ N FN+P N+ P+ S IP+NL
Sbjct: 4501 WHSRLSRKARSEKWRRTYVERS*NRFNVPN*NSTGPITSS*LIPSNL 4361
Score = 43.7 bits (89), Expect(3) = 5e-021
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +3 / -1
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHS 194
+LLH HPLN* Q K +F I KPWH S + L++ II S
Sbjct: 4713 LLLHIHPLN*TQTRKDSTRRVFHL*AIIKPWHCSLQCRLHVSLIICKS 4570
>ref|NM_180715.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
factor AT5G20730 (NPH4) transcript variant AT5G20730.1
mRNA, complete cds
Length = 4341
Score = 301 bits (651), Expect = 2e-080
Identities = 120/190 (63%), Positives = 141/190 (74%)
Frame = -1 / +1
Query: 623 SSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGM 444
SS S + AA A NS + A P+EFV+PLAKY KA+Y QVSLGM
Sbjct: 1318 SSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRWAAPAEFVVPLAKYTKAMYAQVSLGM 1497
Query: 443 RFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEI 264
RFRM+FETE+ GVRRYMGT+TGI DLDP+RWKNS WRNLQ+GWDES A +R +RVS+W+I
Sbjct: 1498 RFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDI 1677
Query: 263 EPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPGL 84
EPV TPFYICPPPFFRP+ Q GMPDDE ++ESA KRAMPWL + +KD + +FPGL
Sbjct: 1678 EPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWLDNSLEMKDPSSTIFPGL 1857
Query: 83 SLVQWMAMQQ 54
SLVQWM MQQ
Sbjct: 1858 SLVQWMNMQQ 1887
Score = 208 bits (448), Expect = 2e-052
Identities = 97/155 (62%), Positives = 109/155 (70%)
Frame = +1 / -2
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGGG 234
CCI IH*T+LRPG SF +K +SHGIAL A S S SSSGIP C G KNGGG
Sbjct: 1886 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSSGIPGCPEKRGRKNGGG 1707
Query: 235 HI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPE 414
H+* GV TGS+S ETR+ LS A DSS P *RFR *EFFH +GS+S +PV VP+Y TP
Sbjct: 1706 HM*KGVKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPH 1527
Query: 415 SSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXA 519
SSVS ILNRIPR+T Y AL+Y AKG TNS G A
Sbjct: 1526 SSVSNIILNRIPRET*AYIALVYLAKGTTNSAGAA 1422
Score = 132 bits (283), Expect = 9e-030
Identities = 63/175 (36%), Positives = 93/175 (53%)
Frame = +3 / -1
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHSCLLRKLWPEKWW 230
+LLH HPLN* Q K +F I KPWH S + L++ IIWHS L RK EKW
Sbjct: 1890 LLLHIHPLN*TQTRKDSTRRVFHL*AIIKPWHCSLQCRLHVSLIIWHSRLSRKARSEKWR 1711
Query: 231 WAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP 410
Y++ N FN+P N+ P+ S IP+NLK+ P+R+ PS WI + + + H+ +
Sbjct: 1710 RTYVERS*NRFNVPN*NSTGPITSS*LIPSNLKIPPLRVFPSHWIKITDTGNCTHIPTNS 1531
Query: 411 *ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXTICSSMGXC 575
LK HS+ H++G+L + + *R+ K + P + + T+ S C
Sbjct: 1530 TFFSLKYHSKPHTEGNLSVHRFGILG*RNHKLSRSSPPRVVENGERTVISISMSC 1366
Score = 84.0 bits (177), Expect(2) = 2e-024
Identities = 51/146 (34%), Positives = 73/146 (50%)
Frame = -2 / +2
Query: 493 L*QNTIRLCIHKCPLECDSECSLRQRIQG*EDTWARSQALAT*IHCDGRILIGETFRLVG 314
L* + + C K P C E LR + W + I DG+ L G FRL G
Sbjct: 1448 L*PSIPKRCTLKFPSVCGLE*YLRLKNVEFVGIWVQLPVSVILIQ*DGKTLSGGIFRLDG 1627
Query: 313 MNRLHLRGAPVFRYGRLNQLLHHFIYAHHHFSGQSFLSKQECQMMKTRLRVLSKERCHGL 134
M++L + G F++G LN+ Y HFS +FL ECQMM+ + +E+CHGL
Sbjct: 1628 MSQLLVIGPVEFQFGTLNRF*LLSTYVLLHFSDLAFLDNLECQMMRLTWSLH*REQCHGL 1807
Query: 133 LMTSL*KMSKMHYFQA*A*FNGWLCS 56
++ *K ++ F * *F+G +CS
Sbjct: 1808 IIA*R*KTLRVLSFLV*V*FSG*ICS 1885
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
LSSS S M + AA HA AN+ PFTIFYNPR
Sbjct: 1312 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPR 1419
>ref|NM_122080.2| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
factor AT5G20730 (NPH4) transcript variant AT5G20730.3
mRNA, complete cds
Length = 4296
Score = 301 bits (651), Expect = 2e-080
Identities = 120/190 (63%), Positives = 141/190 (74%)
Frame = -1 / +1
Query: 623 SSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGM 444
SS S + AA A NS + A P+EFV+PLAKY KA+Y QVSLGM
Sbjct: 1318 SSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRWAAPAEFVVPLAKYTKAMYAQVSLGM 1497
Query: 443 RFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEI 264
RFRM+FETE+ GVRRYMGT+TGI DLDP+RWKNS WRNLQ+GWDES A +R +RVS+W+I
Sbjct: 1498 RFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDI 1677
Query: 263 EPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPGL 84
EPV TPFYICPPPFFRP+ Q GMPDDE ++ESA KRAMPWL + +KD + +FPGL
Sbjct: 1678 EPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWLDNSLEMKDPSSTIFPGL 1857
Query: 83 SLVQWMAMQQ 54
SLVQWM MQQ
Sbjct: 1858 SLVQWMNMQQ 1887
Score = 208 bits (448), Expect = 2e-052
Identities = 97/155 (62%), Positives = 109/155 (70%)
Frame = +1 / -2
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGGG 234
CCI IH*T+LRPG SF +K +SHGIAL A S S SSSGIP C G KNGGG
Sbjct: 1886 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSSGIPGCPEKRGRKNGGG 1707
Query: 235 HI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPE 414
H+* GV TGS+S ETR+ LS A DSS P *RFR *EFFH +GS+S +PV VP+Y TP
Sbjct: 1706 HM*KGVKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPH 1527
Query: 415 SSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXA 519
SSVS ILNRIPR+T Y AL+Y AKG TNS G A
Sbjct: 1526 SSVSNIILNRIPRET*AYIALVYLAKGTTNSAGAA 1422
Score = 132 bits (283), Expect = 9e-030
Identities = 63/175 (36%), Positives = 93/175 (53%)
Frame = +3 / -1
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHSCLLRKLWPEKWW 230
+LLH HPLN* Q K +F I KPWH S + L++ IIWHS L RK EKW
Sbjct: 1890 LLLHIHPLN*TQTRKDSTRRVFHL*AIIKPWHCSLQCRLHVSLIIWHSRLSRKARSEKWR 1711
Query: 231 WAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP 410
Y++ N FN+P N+ P+ S IP+NLK+ P+R+ PS WI + + + H+ +
Sbjct: 1710 RTYVERS*NRFNVPN*NSTGPITSS*LIPSNLKIPPLRVFPSHWIKITDTGNCTHIPTNS 1531
Query: 411 *ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXTICSSMGXC 575
LK HS+ H++G+L + + *R+ K + P + + T+ S C
Sbjct: 1530 TFFSLKYHSKPHTEGNLSVHRFGILG*RNHKLSRSSPPRVVENGERTVISISMSC 1366
Score = 84.0 bits (177), Expect(2) = 2e-024
Identities = 51/146 (34%), Positives = 73/146 (50%)
Frame = -2 / +2
Query: 493 L*QNTIRLCIHKCPLECDSECSLRQRIQG*EDTWARSQALAT*IHCDGRILIGETFRLVG 314
L* + + C K P C E LR + W + I DG+ L G FRL G
Sbjct: 1448 L*PSIPKRCTLKFPSVCGLE*YLRLKNVEFVGIWVQLPVSVILIQ*DGKTLSGGIFRLDG 1627
Query: 313 MNRLHLRGAPVFRYGRLNQLLHHFIYAHHHFSGQSFLSKQECQMMKTRLRVLSKERCHGL 134
M++L + G F++G LN+ Y HFS +FL ECQMM+ + +E+CHGL
Sbjct: 1628 MSQLLVIGPVEFQFGTLNRF*LLSTYVLLHFSDLAFLDNLECQMMRLTWSLH*REQCHGL 1807
Query: 133 LMTSL*KMSKMHYFQA*A*FNGWLCS 56
++ *K ++ F * *F+G +CS
Sbjct: 1808 IIA*R*KTLRVLSFLV*V*FSG*ICS 1885
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
LSSS S M + AA HA AN+ PFTIFYNPR
Sbjct: 1312 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPR 1419
>gb|AF022368.1|AF022368 Arabidopsis thaliana BIPOSTO (BIP) mRNA, complete cds
Length = 4341
Score = 299 bits (647), Expect = 6e-080
Identities = 119/190 (62%), Positives = 141/190 (74%)
Frame = -1 / +1
Query: 623 SSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGM 444
SS S + AA A NS + A P+EFV+PLAKY KA+Y QVSLGM
Sbjct: 1318 SSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRWAAPAEFVVPLAKYTKAMYAQVSLGM 1497
Query: 443 RFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEI 264
RFRM+FETE+ GVRRYMGT+TGI DLDP+RW+NS WRNLQ+GWDES A +R +RVS+W+I
Sbjct: 1498 RFRMIFETEECGVRRYMGTVTGISDLDPVRWENSQWRNLQIGWDESAAGDRPSRVSVWDI 1677
Query: 263 EPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPGL 84
EPV TPFYICPPPFFRP+ Q GMPDDE ++ESA KRAMPWL + +KD + +FPGL
Sbjct: 1678 EPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWLDNSLEMKDPSSTIFPGL 1857
Query: 83 SLVQWMAMQQ 54
SLVQWM MQQ
Sbjct: 1858 SLVQWMNMQQ 1887
Score = 204 bits (440), Expect = 2e-051
Identities = 96/155 (61%), Positives = 108/155 (69%)
Frame = +1 / -2
Query: 55 CCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSSGIPACLGSFGLKNGGG 234
CCI IH*T+LRPG SF +K +SHGIAL A S S SSSGIP C G KNGGG
Sbjct: 1886 CCIFIH*TKLRPGKIVLEGSFISKLLSSHGIALFSADSMSVSSSGIPGCPEKRGRKNGGG 1707
Query: 235 HI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPE 414
H+* GV TGS+S ETR+ LS A DSS P *RFR *EF H +GS+S +PV VP+Y TP
Sbjct: 1706 HM*KGVKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFSHLTGSRSLIPVTVPIYRRTPH 1527
Query: 415 SSVSKSILNRIPRDTCVYRALLYFAKGMTNSDGXA 519
SSVS ILNRIPR+T Y AL+Y AKG TNS G A
Sbjct: 1526 SSVSNIILNRIPRET*AYIALVYLAKGTTNSAGAA 1422
Score = 132 bits (283), Expect = 9e-030
Identities = 63/175 (36%), Positives = 93/175 (53%)
Frame = +3 / -1
Query: 51 ILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFIIWHSCLLRKLWPEKWW 230
+LLH HPLN* Q K +F I KPWH S + L++ IIWHS L RK EKW
Sbjct: 1890 LLLHIHPLN*TQTRKNSTRRVFHL*AIIKPWHCSLQCRLHVSLIIWHSRLSRKARSEKWR 1711
Query: 231 WAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLKVSPMRILPSQWI*VANACDRAHVSSYP 410
Y++ N FN+P N+ P+ S IP+NLK+ P+R+ PS WI + + + H+ +
Sbjct: 1710 RTYVERS*NRFNVPN*NSTGPITSS*LIPSNLKIPPLRVFPSHWIKITDTGNCTHIPTNS 1531
Query: 411 *ILCLKEHSESHSKGHLCIQSLIVFC*RDDKF*WACPWIIENSKWXTICSSMGXC 575
LK HS+ H++G+L + + *R+ K + P + + T+ S C
Sbjct: 1530 TFFSLKYHSKPHTEGNLSVHRFGILG*RNHKLSRSSPPRVVENGERTVISISMSC 1366
Score = 86.3 bits (182), Expect(2) = 5e-025
Identities = 51/146 (34%), Positives = 74/146 (50%)
Frame = -2 / +2
Query: 493 L*QNTIRLCIHKCPLECDSECSLRQRIQG*EDTWARSQALAT*IHCDGRILIGETFRLVG 314
L* + + C K P C E LR + W + I DG+ L G FRL G
Sbjct: 1448 L*PSIPKRCTLKFPSVCGLE*YLRLKNVEFVGIWVQLPVSVILIQ*DGKTLSGGIFRLDG 1627
Query: 313 MNRLHLRGAPVFRYGRLNQLLHHFIYAHHHFSGQSFLSKQECQMMKTRLRVLSKERCHGL 134
M++L + G F++G LN+ Y HFS +FL ECQMM+ + +E+CHGL
Sbjct: 1628 MSQLLVIGPVEFQFGTLNRF*LLSTYVLLHFSDLAFLDNLECQMMRLTWSLH*REQCHGL 1807
Query: 133 LMTSL*KMSKMHYFQA*A*FNGWLCS 56
++ *K ++ +F * *F+G +CS
Sbjct: 1808 IIA*R*KTLRVLFFLV*V*FSG*ICS 1885
Score = 50.1 bits (103), Expect(2) = 5e-025
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
LSSS S M + AA HA AN+ PFTIFYNPR
Sbjct: 1312 LSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPR 1419
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 191 bits (411), Expect(2) = 2e-073
Identities = 78/102 (76%), Positives = 83/102 (81%)
Frame = -1 / -3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
LSSS S M I AA HA ANS PFTIF+NPRA PSEFV+PLAKYNKALY QVSLG
Sbjct: 6631281 LSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 6631102
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQV 321
MRFRM+FETED GVRRYMGT+TGI DLDP+RWK S WRNLQV
Sbjct: 6631101 MRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQV 6630976
Score = 108 bits (231), Expect = 1e-022
Identities = 52/101 (51%), Positives = 63/101 (62%)
Frame = +1 / +2
Query: 322 T*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKGMT 501
T*R R E FH +GS+S +PV VP+YL TP+SSVS I N IPRDT Y+ALLY AKG T
Sbjct: 6630977 T*RLRHCEPFHLTGSRSLIPVTVPIYLRTPQSSVSNIIRNLIPRDT*AYKALLYLAKGTT 6631156
Query: 502 NSDGXALGL*KIVNGLLFXXXXXXXXXIXXXMXXXXXXDDD 624
NS+G ALGL K+V GLL I + D++
Sbjct: 6631157 NSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEE 6631279
Score = 106 bits (227), Expect(2) = 2e-073
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -1 / -2
Query: 326 QVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMPDD 180
QVGWDESTA +R +RVSIWEIEPV TPFYICPPPFFRPK P+Q GMP +
Sbjct: 6630904 QVGWDESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQPGMPGE 6630758
>ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6); transcription
factor AT1G30330 (ARF6) transcript variant AT1G30330.1
mRNA, complete cds
Length = 3868
Score = 150 bits (322), Expect(2) = 4e-052
Identities = 62/94 (65%), Positives = 73/94 (77%)
Frame = -1 / +2
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T+VS+GMRFRMLFETE+S VRRYMGTITGI DLDP RW NSHWR+++VGWDESTA ER+
Sbjct: 1628 HTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQ 1807
Query: 287 TRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
RVS+WEIEP+ T P R K P G+P
Sbjct: 1808 PRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLP 1909
Score = 94.1 bits (199), Expect(2) = 5e-025
Identities = 51/93 (54%), Positives = 55/93 (59%)
Frame = +1 / -2
Query: 187 GIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGS 366
G P G L+ G V GSISH ET LS AVDSS PT RQ E R GS
Sbjct: 1908 GRPGGHGRLSLRGKGDGYIGNVVKGSISHNETLGCLSPAVDSSHPTLTDRQCELAQRVGS 1729
Query: 367 KSPMPVIVPMYLLTPESSVSKSILNRIPRDTCV 465
+S MPVIVPMY T +SSVS SILNRIP +T V
Sbjct: 1728 RSQMPVIVPMYRRTLDSSVSNSILNRIPTETRV 1630
Score = 76.7 bits (161), Expect(2) = 4e-052
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = -1 / +2
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
+ SS S M + AA HAAA + FTIFYNPRA PSEFVIPLAKY KA+Y
Sbjct: 1466 MPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVY 1627
Score = 42.3 bits (86), Expect(2) = 5e-025
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1 / -2
Query: 472 ALLYFAKGMTNSDGXALGL*KIVNGL 549
A Y A+G+TNSDG ALGL*K+VN L
Sbjct: 1620 AFTYLARGITNSDGLALGL*KMVNRL 1543
>gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRNA, complete cds
Length = 3832
Score = 150 bits (322), Expect(2) = 4e-052
Identities = 62/94 (65%), Positives = 73/94 (77%)
Frame = -1 / +3
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T+VS+GMRFRMLFETE+S VRRYMGTITGI DLDP RW NSHWR+++VGWDESTA ER+
Sbjct: 1617 HTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQ 1796
Query: 287 TRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
RVS+WEIEP+ T P R K P G+P
Sbjct: 1797 PRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLP 1898
Score = 94.1 bits (199), Expect(2) = 5e-025
Identities = 51/93 (54%), Positives = 55/93 (59%)
Frame = +1 / -1
Query: 187 GIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGS 366
G P G L+ G V GSISH ET LS AVDSS PT RQ E R GS
Sbjct: 1897 GRPGGHGRLSLRGKGDGYIGNVVKGSISHNETLGCLSPAVDSSHPTLTDRQCELAQRVGS 1718
Query: 367 KSPMPVIVPMYLLTPESSVSKSILNRIPRDTCV 465
+S MPVIVPMY T +SSVS SILNRIP +T V
Sbjct: 1717 RSQMPVIVPMYRRTLDSSVSNSILNRIPTETRV 1619
Score = 76.7 bits (161), Expect(2) = 4e-052
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = -1 / +3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
+ SS S M + AA HAAA + FTIFYNPRA PSEFVIPLAKY KA+Y
Sbjct: 1455 MPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVY 1616
Score = 42.3 bits (86), Expect(2) = 5e-025
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1 / -1
Query: 472 ALLYFAKGMTNSDGXALGL*KIVNGL 549
A Y A+G+TNSDG ALGL*K+VN L
Sbjct: 1609 AFTYLARGITNSDGLALGL*KMVNRL 1532
>ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6) AT1G30330 (ARF6)
transcript variant AT1G30330.2 mRNA, complete cds
Length = 3111
Score = 150 bits (322), Expect(2) = 4e-052
Identities = 62/94 (65%), Positives = 73/94 (77%)
Frame = -1 / +1
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T+VS+GMRFRMLFETE+S VRRYMGTITGI DLDP RW NSHWR+++VGWDESTA ER+
Sbjct: 871 HTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQ 1050
Query: 287 TRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
RVS+WEIEP+ T P R K P G+P
Sbjct: 1051 PRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLP 1152
Score = 94.1 bits (199), Expect(2) = 5e-025
Identities = 51/93 (54%), Positives = 55/93 (59%)
Frame = +1 / -2
Query: 187 GIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGS 366
G P G L+ G V GSISH ET LS AVDSS PT RQ E R GS
Sbjct: 1151 GRPGGHGRLSLRGKGDGYIGNVVKGSISHNETLGCLSPAVDSSHPTLTDRQCELAQRVGS 972
Query: 367 KSPMPVIVPMYLLTPESSVSKSILNRIPRDTCV 465
+S MPVIVPMY T +SSVS SILNRIP +T V
Sbjct: 971 RSQMPVIVPMYRRTLDSSVSNSILNRIPTETRV 873
Score = 76.7 bits (161), Expect(2) = 4e-052
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
+ SS S M + AA HAAA + FTIFYNPRA PSEFVIPLAKY KA+Y
Sbjct: 709 MPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVY 870
Score = 42.3 bits (86), Expect(2) = 5e-025
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1 / -2
Query: 472 ALLYFAKGMTNSDGXALGL*KIVNGL 549
A Y A+G+TNSDG ALGL*K+VN L
Sbjct: 863 AFTYLARGITNSDGLALGL*KMVNRL 786
>gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete
cds
Length = 2839
Score = 150 bits (322), Expect(2) = 4e-052
Identities = 62/94 (65%), Positives = 73/94 (77%)
Frame = -1 / +1
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T+VS+GMRFRMLFETE+S VRRYMGTITGI DLDP RW NSHWR+++VGWDESTA ER+
Sbjct: 871 HTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQ 1050
Query: 287 TRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
RVS+WEIEP+ T P R K P G+P
Sbjct: 1051 PRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLP 1152
Score = 94.1 bits (199), Expect(2) = 5e-025
Identities = 51/93 (54%), Positives = 55/93 (59%)
Frame = +1 / -3
Query: 187 GIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGS 366
G P G L+ G V GSISH ET LS AVDSS PT RQ E R GS
Sbjct: 1151 GRPGGHGRLSLRGKGDGYIGNVVKGSISHNETLGCLSPAVDSSHPTLTDRQCELAQRVGS 972
Query: 367 KSPMPVIVPMYLLTPESSVSKSILNRIPRDTCV 465
+S MPVIVPMY T +SSVS SILNRIP +T V
Sbjct: 971 RSQMPVIVPMYRRTLDSSVSNSILNRIPTETRV 873
Score = 76.7 bits (161), Expect(2) = 4e-052
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
+ SS S M + AA HAAA + FTIFYNPRA PSEFVIPLAKY KA+Y
Sbjct: 709 MPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVY 870
Score = 42.3 bits (86), Expect(2) = 5e-025
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1 / -3
Query: 472 ALLYFAKGMTNSDGXALGL*KIVNGL 549
A Y A+G+TNSDG ALGL*K+VN L
Sbjct: 863 AFTYLARGITNSDGLALGL*KMVNRL 786
>ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE FACTOR 8); transcription
factor AT5G37020 (ARF8) mRNA, complete cds
Length = 2840
Score = 145 bits (311), Expect(2) = 2e-045
Identities = 54/73 (73%), Positives = 66/73 (90%)
Frame = -1 / +1
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T++S+GMRFRMLFETE+S VRRYMGTITGI DLD +RW NSHWR+++VGWDESTA ER+
Sbjct: 985 HTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQ 1164
Query: 287 TRVSIWEIEPVAT 249
RVS+WEIEP+ T
Sbjct: 1165 PRVSLWEIEPLTT 1203
Score = 98.2 bits (208), Expect(2) = 9e-022
Identities = 52/99 (52%), Positives = 62/99 (62%)
Frame = +1 / -1
Query: 190 IPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSK 369
+PAC G F L+ V GSISH ET LS AVDSSQPT RQ*EF R+ S+
Sbjct: 1262 VPACHGRFSLRGKRDGYIGKVVRGSISHKETLGCLSPAVDSSQPTFTDRQ*EFGQRTESR 1083
Query: 370 SPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYF 486
S +PVIVPMYL T +SSVSKS+ RIP + V + L +
Sbjct: 1082 SLIPVIVPMYLRTLDSSVSKSMRKRIPTEIRV*KTALMY 966
Score = 59.3 bits (123), Expect(2) = 2e-045
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
SS S M + AA HA+A + FT+F++PRA SEFVI L+KY KA++
Sbjct: 829 SSVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVF 984
Score = 27.2 bits (53), Expect(2) = 9e-022
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +1 / -1
Query: 472 ALLYFAKGMTNSDGXALGL*KIVNGLLFXXXXXXXXXIXXXMXXXXXXDD 621
AL+Y +TNSD ALG K V LL M DD
Sbjct: 977 ALMYLESCITNSDWLALG*KKTVKQLLVAEACAAAARSPICMLSLDKTDD 828
>gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete
cds
Length = 2817
Score = 145 bits (311), Expect(2) = 2e-045
Identities = 54/73 (73%), Positives = 66/73 (90%)
Frame = -1 / +1
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T++S+GMRFRMLFETE+S VRRYMGTITGI DLD +RW NSHWR+++VGWDESTA ER+
Sbjct: 985 HTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQ 1164
Query: 287 TRVSIWEIEPVAT 249
RVS+WEIEP+ T
Sbjct: 1165 PRVSLWEIEPLTT 1203
Score = 98.2 bits (208), Expect(2) = 9e-022
Identities = 52/99 (52%), Positives = 62/99 (62%)
Frame = +1 / -2
Query: 190 IPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSK 369
+PAC G F L+ V GSISH ET LS AVDSSQPT RQ*EF R+ S+
Sbjct: 1262 VPACHGRFSLRGKRDGYIGKVVRGSISHKETLGCLSPAVDSSQPTFTDRQ*EFGQRTESR 1083
Query: 370 SPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYF 486
S +PVIVPMYL T +SSVSKS+ RIP + V + L +
Sbjct: 1082 SLIPVIVPMYLRTLDSSVSKSMRKRIPTEIRV*KTALMY 966
Score = 59.3 bits (123), Expect(2) = 2e-045
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
SS S M + AA HA+A + FT+F++PRA SEFVI L+KY KA++
Sbjct: 829 SSVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVF 984
Score = 27.2 bits (53), Expect(2) = 9e-022
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +1 / -2
Query: 472 ALLYFAKGMTNSDGXALGL*KIVNGLLFXXXXXXXXXIXXXMXXXXXXDD 621
AL+Y +TNSD ALG K V LL M DD
Sbjct: 977 ALMYLESCITNSDWLALG*KKTVKQLLVAEACAAAARSPICMLSLDKTDD 828
>gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5g37020) mRNA, complete
cds
Length = 2467
Score = 145 bits (311), Expect(2) = 2e-045
Identities = 54/73 (73%), Positives = 66/73 (90%)
Frame = -1 / +1
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T++S+GMRFRMLFETE+S VRRYMGTITGI DLD +RW NSHWR+++VGWDESTA ER+
Sbjct: 862 HTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQ 1041
Query: 287 TRVSIWEIEPVAT 249
RVS+WEIEP+ T
Sbjct: 1042 PRVSLWEIEPLTT 1080
Score = 98.2 bits (208), Expect(2) = 9e-022
Identities = 52/99 (52%), Positives = 62/99 (62%)
Frame = +1 / -3
Query: 190 IPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSK 369
+PAC G F L+ V GSISH ET LS AVDSSQPT RQ*EF R+ S+
Sbjct: 1139 VPACHGRFSLRGKRDGYIGKVVRGSISHKETLGCLSPAVDSSQPTFTDRQ*EFGQRTESR 960
Query: 370 SPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYF 486
S +PVIVPMYL T +SSVSKS+ RIP + V + L +
Sbjct: 959 SLIPVIVPMYLRTLDSSVSKSMRKRIPTEIRV*KTALMY 843
Score = 59.3 bits (123), Expect(2) = 2e-045
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
SS S M + AA HA+A + FT+F++PRA SEFVI L+KY KA++
Sbjct: 706 SSVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVF 861
Score = 27.2 bits (53), Expect(2) = 9e-022
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +1 / -3
Query: 472 ALLYFAKGMTNSDGXALGL*KIVNGLLFXXXXXXXXXIXXXMXXXXXXDD 621
AL+Y +TNSD ALG K V LL M DD
Sbjct: 854 ALMYLESCITNSDWLALG*KKTVKQLLVAEACAAAARSPICMLSLDKTDD 705
>ref|NM_101840.2| Arabidopsis thaliana MP (MONOPTEROS); transcription factor AT1G19850
(MP) mRNA, complete cds
Length = 3375
Score = 121 bits (258), Expect(2) = 5e-043
Identities = 47/68 (69%), Positives = 55/68 (80%)
Frame = -1 / +1
Query: 464 TQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRT 285
+Q+S+GMRF M+FETEDSG RRYMGTI GI DLDPLRW S WRNLQV WDE +++ T
Sbjct: 1435 SQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPT 1614
Query: 284 RVSIWEIE 261
RVS W+IE
Sbjct: 1615 RVSPWDIE 1638
Score = 75.8 bits (159), Expect(2) = 5e-043
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKAL 468
L SS S M + AA HA AN PF IFYNPRA P+EFVIPLAKY KA+
Sbjct: 1270 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAI 1428
>gb|BT002050.1| Arabidopsis thaliana transcription factor (At1g19850) mRNA, complete
cds
Length = 3371
Score = 121 bits (258), Expect(2) = 5e-043
Identities = 47/68 (69%), Positives = 55/68 (80%)
Frame = -1 / +1
Query: 464 TQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRT 285
+Q+S+GMRF M+FETEDSG RRYMGTI GI DLDPLRW S WRNLQV WDE +++ T
Sbjct: 1435 SQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPT 1614
Query: 284 RVSIWEIE 261
RVS W+IE
Sbjct: 1615 RVSPWDIE 1638
Score = 75.8 bits (159), Expect(2) = 5e-043
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKAL 468
L SS S M + AA HA AN PF IFYNPRA P+EFVIPLAKY KA+
Sbjct: 1270 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAI 1428
>gb|AF037229.1|AF037229 Arabidopsis thaliana transcription factor (MP) mRNA, complete cds
Length = 3106
Score = 121 bits (258), Expect(2) = 5e-043
Identities = 47/68 (69%), Positives = 55/68 (80%)
Frame = -1 / +2
Query: 464 TQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRT 285
+Q+S+GMRF M+FETEDSG RRYMGTI GI DLDPLRW S WRNLQV WDE +++ T
Sbjct: 1178 SQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPT 1357
Query: 284 RVSIWEIE 261
RVS W+IE
Sbjct: 1358 RVSPWDIE 1381
Score = 75.8 bits (159), Expect(2) = 5e-043
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = -1 / +2
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKAL 468
L SS S M + AA HA AN PF IFYNPRA P+EFVIPLAKY KA+
Sbjct: 1013 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAI 1171
>emb|AX505602.1| Sequence 297 from Patent WO0216655
Length = 2709
Score = 121 bits (258), Expect(2) = 5e-043
Identities = 47/68 (69%), Positives = 55/68 (80%)
Frame = -1 / +1
Query: 464 TQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRT 285
+Q+S+GMRF M+FETEDSG RRYMGTI GI DLDPLRW S WRNLQV WDE +++ T
Sbjct: 961 SQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPT 1140
Query: 284 RVSIWEIE 261
RVS W+IE
Sbjct: 1141 RVSPWDIE 1164
Score = 75.8 bits (159), Expect(2) = 5e-043
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKAL 468
L SS S M + AA HA AN PF IFYNPRA P+EFVIPLAKY KA+
Sbjct: 796 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAI 954
>emb|AX651413.1| Sequence 208 from Patent WO03000898
Length = 2709
Score = 121 bits (258), Expect(2) = 5e-043
Identities = 47/68 (69%), Positives = 55/68 (80%)
Frame = -1 / +1
Query: 464 TQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRT 285
+Q+S+GMRF M+FETEDSG RRYMGTI GI DLDPLRW S WRNLQV WDE +++ T
Sbjct: 961 SQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPT 1140
Query: 284 RVSIWEIE 261
RVS W+IE
Sbjct: 1141 RVSPWDIE 1164
Score = 75.8 bits (159), Expect(2) = 5e-043
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKAL 468
L SS S M + AA HA AN PF IFYNPRA P+EFVIPLAKY KA+
Sbjct: 796 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAI 954
>gb|AF334716.1| Arabidopsis thaliana clone C00027 (h) auxin response factor 5
(At1g19850) mRNA, complete cds
Length = 2709
Score = 121 bits (258), Expect(2) = 5e-043
Identities = 47/68 (69%), Positives = 55/68 (80%)
Frame = -1 / +1
Query: 464 TQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRT 285
+Q+S+GMRF M+FETEDSG RRYMGTI GI DLDPLRW S WRNLQV WDE +++ T
Sbjct: 961 SQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPT 1140
Query: 284 RVSIWEIE 261
RVS W+IE
Sbjct: 1141 RVSPWDIE 1164
Score = 75.8 bits (159), Expect(2) = 5e-043
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKAL 468
L SS S M + AA HA AN PF IFYNPRA P+EFVIPLAKY KA+
Sbjct: 796 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAI 954
>gb|BT008805.1| Arabidopsis thaliana At1g19850 gene, complete cds
Length = 2709
Score = 121 bits (258), Expect(2) = 5e-043
Identities = 47/68 (69%), Positives = 55/68 (80%)
Frame = -1 / +1
Query: 464 TQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRT 285
+Q+S+GMRF M+FETEDSG RRYMGTI GI DLDPLRW S WRNLQV WDE +++ T
Sbjct: 961 SQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPT 1140
Query: 284 RVSIWEIE 261
RVS W+IE
Sbjct: 1141 RVSPWDIE 1164
Score = 75.8 bits (159), Expect(2) = 5e-043
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKAL 468
L SS S M + AA HA AN PF IFYNPRA P+EFVIPLAKY KA+
Sbjct: 796 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAI 954
>gb|U79557.1|U79557 Arabidopsis thaliana IAA24 (IAA24) mRNA, partial cds
Length = 2690
Score = 121 bits (258), Expect(2) = 5e-043
Identities = 47/68 (69%), Positives = 55/68 (80%)
Frame = -1 / +1
Query: 464 TQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRT 285
+Q+S+GMRF M+FETEDSG RRYMGTI GI DLDPLRW S WRNLQV WDE +++ T
Sbjct: 925 SQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPT 1104
Query: 284 RVSIWEIE 261
RVS W+IE
Sbjct: 1105 RVSPWDIE 1128
Score = 75.8 bits (159), Expect(2) = 5e-043
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKAL 468
L SS S M + AA HA AN PF IFYNPRA P+EFVIPLAKY KA+
Sbjct: 760 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAI 918
>gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BAC T4K22 genomic sequence, complete
sequence
Length = 82281
Score = 62.0 bits (129), Expect(5) = 5e-043
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = -1 / +2
Query: 419 EDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQV 321
E S V RYMGTITGI DLDP RW NSHWR+++V
Sbjct: 68534 ESSFVVRYMGTITGICDLDPTRWANSHWRSVKV 68632
Score = 60.2 bits (125), Expect(5) = 5e-043
Identities = 27/52 (51%), Positives = 32/52 (61%)
Frame = -1 / +1
Query: 341 HWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
H +QVGWDESTA ER+ RVS+WEIEP+ T P R K P G+P
Sbjct: 68704 HLIKMQVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLP 68859
Score = 46.0 bits (94), Expect(5) = 5e-043
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = -1 / +3
Query: 467 YTQVSLGMRFRMLFETEDSGVRR 399
+T+VS+GMRFRMLFETE+S VRR
Sbjct: 68406 HTRVSVGMRFRMLFETEESSVRR 68474
Score = 42.3 bits (86), Expect(5) = 5e-043
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -1 / +3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
+ SS S M + AA HAAA + FTIFYNPR
Sbjct: 68163 MPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPR 68270
Score = 39.6 bits (80), Expect(5) = 5e-043
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -1 / +3
Query: 521 RAXPSEFVIPLAKYNKALY 465
RA PSEFVIPLAKY KA+Y
Sbjct: 68349 RASPSEFVIPLAKYVKAVY 68405
>gb|AC007797.7|AC007797 Arabidopsis thaliana chromosome I BAC F6F9 genomic sequence, complete
sequence
Length = 119942
Score = 85.4 bits (180), Expect(4) = 1e-035
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = -1 / -3
Query: 407 VRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
V RYMGTI GI DLDPLRW S WRNLQV WDE +++ TRVS W+IE
Sbjct: 33492 VFRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIE 33346
Score = 45.1 bits (92), Expect(4) = 1e-035
Identities = 19/36 (52%), Positives = 20/36 (55%)
Frame = -1 / -1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
L SS S M + AA HA AN PF IFYNPR
Sbjct: 33881 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPR 33774
Score = 41.4 bits (84), Expect(4) = 1e-035
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = -1 / -2
Query: 464 TQVSLGMRFRMLFETEDSGVRR 399
+Q+S+GMRF M+FETEDSG RR
Sbjct: 33634 SQLSVGMRFGMMFETEDSGKRR 33569
Score = 35.9 bits (72), Expect(4) = 1e-035
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / -2
Query: 521 RAXPSEFVIPLAKYNKAL 468
RA P+EFVIPLAKY KA+
Sbjct: 33694 RACPAEFVIPLAKYRKAI 33641
>gb|AF037228.1|AF037228 Arabidopsis thaliana transcription factor (MP) gene, complete cds
Length = 4224
Score = 85.4 bits (180), Expect(4) = 1e-035
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = -1 / +2
Query: 407 VRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
V RYMGTI GI DLDPLRW S WRNLQV WDE +++ TRVS W+IE
Sbjct: 2090 VFRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIE 2236
Score = 45.1 bits (92), Expect(4) = 1e-035
Identities = 19/36 (52%), Positives = 20/36 (55%)
Frame = -1 / +3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
L SS S M + AA HA AN PF IFYNPR
Sbjct: 1701 LPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPR 1808
Score = 41.4 bits (84), Expect(4) = 1e-035
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = -1 / +1
Query: 464 TQVSLGMRFRMLFETEDSGVRR 399
+Q+S+GMRF M+FETEDSG RR
Sbjct: 1948 SQLSVGMRFGMMFETEDSGKRR 2013
Score = 35.9 bits (72), Expect(4) = 1e-035
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / +1
Query: 521 RAXPSEFVIPLAKYNKAL 468
RA P+EFVIPLAKY KA+
Sbjct: 1888 RACPAEFVIPLAKYRKAI 1941
>gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10_20 mRNA, complete cds
Length = 3171
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +2
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 1160 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 1339
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1340 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1519
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1520 PALAPPALSPVPMPRPKRPR 1579
>gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R10939) auxin response
factor (At5g62000) mRNA, complete cds
Length = 3498
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 1321 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 1500
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1501 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1680
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1681 PALAPPALSPVPMPRPKRPR 1740
>gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA, complete cds
Length = 2037
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 820 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 999
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1000 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1179
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1180 PALAPPALSPVPMPRPKRPR 1239
>gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5g62000) mRNA, complete
cds
Length = 2772
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 820 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 999
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1000 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1179
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1180 PALAPPALSPVPMPRPKRPR 1239
>dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-07-O11
Length = 3317
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +3
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 1158 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 1337
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1338 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1517
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1518 PALAPPALSPVPMPRPKRPR 1577
>dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-09-L23
Length = 3317
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +3
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 1158 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 1337
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1338 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1517
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1518 PALAPPALSPVPMPRPKRPR 1577
>dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-16-M02
Length = 3317
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +3
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 1158 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 1337
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1338 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1517
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1518 PALAPPALSPVPMPRPKRPR 1577
>dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-18-M11
Length = 3316
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +3
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 1110 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 1289
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1290 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1469
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1470 PALAPPALSPVPMPRPKRPR 1529
>dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-19-K22
Length = 3275
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 1108 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 1287
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1288 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1467
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1468 PALAPPALSPVPMPRPKRPR 1527
>dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-31-F22
Length = 3335
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 1129 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 1308
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1309 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1488
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1489 PALAPPALSPVPMPRPKRPR 1548
>emb|CS165494.1| Sequence 2 from Patent WO2005085453
Length = 3384
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 1195 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 1374
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1375 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1554
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1555 PALAPPALSPVPMPRPKRPR 1614
>emb|CS165497.1| Sequence 5 from Patent WO2005085453
Length = 2576
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +3
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 816 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 995
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 996 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1175
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1176 PALAPPALSPVPMPRPKRPR 1235
>emb|CS165547.1| Sequence 55 from Patent WO2005085453
Length = 2580
Score = 151 bits (325), Expect = 2e-035
Identities = 59/140 (42%), Positives = 85/140 (60%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA + FT++Y PR PSEF++P +Y +++ S+GMR
Sbjct: 820 SSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMR 999
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI GI + DP RW S WR+L+V WDE+++ R RVS W++E
Sbjct: 1000 FKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1179
Query: 260 PVATPFYICPPPFFRPKLPK 201
P P + P P RPK P+
Sbjct: 1180 PALAPPALSPVPMPRPKRPR 1239
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,276,260,992
Number of Sequences: 1013581
Number of extensions: 18135183
Number of successful extensions: 193556
Number of sequences better than 1.0e-020: 86
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 37826700255
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)