TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN1e04.yg.2.1
(361 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF089084.1|AF089084 Arabidopsis thaliana putative auxin ... 111 9e-024
gb|AV827386.1|AV827386 AV827386 RAFL9 Arabidopsis thaliana ... 111 1e-023
gb|AF089085.1|AF089085 Arabidopsis thaliana putative auxin ... 111 1e-023
gb|AF372950.1|AF372950 Arabidopsis thaliana At1g73590/F6D5_... 111 1e-023
gb|AY093960.1| Arabidopsis thaliana At1g73590/F6D5_2 mRNA, ... 111 1e-023
gb|AC079676.4|AC079676 Arabidopsis thaliana chromosome 1 BA... 111 1e-023
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 111 1e-023
ref|NM_106017.2| Arabidopsis thaliana PIN1 (PIN-FORMED 1); ... 111 1e-023
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 111 1e-023
gb|AF087016.1|AF087016 Arabidopsis thaliana auxin transport... 110 2e-023
gb|AV829212.1|AV829212 AV829212 RAFL9 Arabidopsis thaliana ... 110 2e-023
gb|BX839961.1|BX839961 BX839961 Arabidopsis thaliana Hormon... 110 2e-023
gb|BX840155.1|BX840155 BX840155 Arabidopsis thaliana Hormon... 110 2e-023
gb|AY091009.1| Arabidopsis thaliana putative auxin transpor... 110 2e-023
gb|BT008691.1| Arabidopsis thaliana clone RAFL09-75-E06 (R1... 110 2e-023
gb|AC005560.3| Arabidopsis thaliana chromosome 2 clone F2I9... 110 2e-023
gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A... 110 2e-023
emb|BX820960.1|CNS0A83S Arabidopsis thaliana Full-length cD... 110 2e-023
emb|CR383955.1| Arabidopsis thaliana transposon insertion S... 110 2e-023
ref|NM_126203.2| Arabidopsis thaliana PIN4 (PIN-FORMED 4); ... 110 2e-023
ref|NM_179592.1| Arabidopsis thaliana PIN4 (PIN-FORMED 4); ... 110 2e-023
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 110 2e-023
gb|AV825669.1|AV825669 AV825669 RAFL7 Arabidopsis thaliana ... 109 3e-023
gb|AV827019.1|AV827019 AV827019 RAFL9 Arabidopsis thaliana ... 109 3e-023
gb|AV829945.1|AV829945 AV829945 RAFL9 Arabidopsis thaliana ... 109 3e-023
gb|AF087818.1|AF087818 Arabidopsis thaliana auxin transport... 109 3e-023
gb|AY136327.1| Arabidopsis thaliana putative auxin transpor... 109 3e-023
emb|AX506152.1| Sequence 847 from Patent WO0216655 109 3e-023
gb|BT002085.1| Arabidopsis thaliana putative auxin transpor... 109 3e-023
gb|AC008148.2|AC008148 Arabidopsis thaliana chromosome I BA... 109 3e-023
ref|NM_105762.2| Arabidopsis thaliana PIN3 (PIN-FORMED 3); ... 109 3e-023
gb|AV529683.1|AV529683 AV529683 Arabidopsis thaliana aboveg... 109 4e-023
gb|AV826037.1|AV826037 AV826037 RAFL8 Arabidopsis thaliana ... 108 6e-023
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 108 6e-023
gb|AY052356.1| Arabidopsis thaliana At1g23080/T26J12_14 mRN... 108 6e-023
gb|AC002311.1| Arabidopsis thaliana chromosome I BAC T26J12... 108 6e-023
ref|NM_102156.1| Arabidopsis thaliana PIN7 (PIN-FORMED 7); ... 108 6e-023
ref|NM_179369.1| Arabidopsis thaliana PIN7 (PIN-FORMED 7); ... 108 6e-023
gb|AF162834.1|AF162834 AF162834 Arabidopsis thaliana immatu... 107 2e-022
gb|AF087820.1|AF087820 Arabidopsis thaliana auxin transport... 106 2e-022
emb|AX506153.1| Sequence 848 from Patent WO0216655 106 3e-022
emb|AX651788.1| Sequence 641 from Patent WO03000898 106 3e-022
emb|AL954303.1| Arabidopsis thaliana transposon insertion S... 106 3e-022
gb|BH172320.1|BH172320 SALK_005544 Arabidopsis thaliana TDN... 105 4e-022
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 103 2e-021
emb|AL391146.1|ATF2G14 Arabidopsis thaliana DNA chromosome ... 103 2e-021
ref|NM_121514.1| Arabidopsis thaliana auxin:hydrogen sympor... 103 2e-021
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 103 2e-021
gb|BP864386.1|BP864386 BP864386 RAFL21 Arabidopsis thaliana... 102 4e-021
gb|BZ291992.1|BZ291992 SALK_122916.49.40.x Arabidopsis thal... 102 5e-021
gb|AV830610.1|AV830610 AV830610 RAFL9 Arabidopsis thaliana ... 102 5e-021
gb|AF056026.1|AF056026 Arabidopsis thaliana auxin transport... 102 5e-021
gb|AF087459.1|AF087459 Arabidopsis thaliana polar-auxin-tra... 102 5e-021
gb|AF086906.1|AF086906 Arabidopsis thaliana root gravitropi... 102 5e-021
gb|AF086907.1|AF086907 Arabidopsis thaliana root gravitropi... 102 5e-021
gb|AF093241.1|AF093241 Arabidopsis thaliana putative auxin ... 102 5e-021
gb|AY078965.1| Arabidopsis thaliana AT5g57090/MUL3_3 mRNA, ... 102 5e-021
emb|AX506610.1| Sequence 1305 from Patent WO0216655 102 5e-021
gb|BT001152.1| Arabidopsis thaliana At5g57090/MUL3_3 mRNA, ... 102 5e-021
dbj|AB023042.1| Arabidopsis thaliana genomic DNA, chromosom... 102 5e-021
dbj|AK176358.1| Arabidopsis thaliana mRNA for root gravitro... 102 5e-021
ref|NM_125091.2| Arabidopsis thaliana EIR1 (ETHYLENE INSENS... 102 5e-021
>gb|AF089084.1|AF089084 Arabidopsis thaliana putative auxin efflux carrier protein (PIN1)
mRNA, complete cds
Length = 2276
Score = 111 bits (237), Expect = 9e-024
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +1 / +2
Query: 58 PPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLS 237
P MI+ YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLS
Sbjct: 71 PANKKMITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLS 250
Query: 238 FQILSTNXXXXXNLKXXXXXXXQK 309
F ++ N NL+ QK
Sbjct: 251 FHFIAANNPYAMNLRFLAADSLQK 322
>gb|AV827386.1|AV827386 AV827386 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-14-N04 5',
mRNA sequence
Length = 600
Score = 111 bits (236), Expect = 1e-023
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF ++
Sbjct: 101 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 280
Query: 253 TNXXXXXNLKXXXXXXXQK 309
N NL+ QK
Sbjct: 281 ANNPYAMNLRFLAADSLQK 337
>gb|AF089085.1|AF089085 Arabidopsis thaliana putative auxin efflux carrier protein (PIN1)
gene, complete cds
Length = 2803
Score = 111 bits (236), Expect = 1e-023
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF ++
Sbjct: 86 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 265
Query: 253 TNXXXXXNLKXXXXXXXQK 309
N NL+ QK
Sbjct: 266 ANNPYAMNLRFLAADSLQK 322
>gb|AF372950.1|AF372950 Arabidopsis thaliana At1g73590/F6D5_2 mRNA, complete cds
Length = 2261
Score = 111 bits (236), Expect = 1e-023
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF ++
Sbjct: 100 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 279
Query: 253 TNXXXXXNLKXXXXXXXQK 309
N NL+ QK
Sbjct: 280 ANNPYAMNLRFLAADSLQK 336
>gb|AY093960.1| Arabidopsis thaliana At1g73590/F6D5_2 mRNA, complete cds
Length = 1869
Score = 111 bits (236), Expect = 1e-023
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF ++
Sbjct: 1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 180
Query: 253 TNXXXXXNLKXXXXXXXQK 309
N NL+ QK
Sbjct: 181 ANNPYAMNLRFLAADSLQK 237
>gb|AC079676.4|AC079676 Arabidopsis thaliana chromosome 1 BAC F6D5 genomic sequence, complete
sequence
Length = 29508
Score = 111 bits (236), Expect = 1e-023
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1 / -2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF ++
Sbjct: 17621 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 17442
Query: 253 TNXXXXXNLKXXXXXXXQK 309
N NL+ QK
Sbjct: 17441 ANNPYAMNLRFLAADSLQK 17385
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 111 bits (236), Expect = 1e-023
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF ++
Sbjct: 11901094 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 11901273
Query: 253 TNXXXXXNLKXXXXXXXQK 309
N NL+ QK
Sbjct: 11901274 ANNPYAMNLRFLAADSLQK 11901330
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 10984484 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 10984663
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 10984664 TNNPYAMNLRFIAADTLQK 10984720
>ref|NM_106017.2| Arabidopsis thaliana PIN1 (PIN-FORMED 1); transporter AT1G73590
(PIN1) mRNA, complete cds
Length = 2269
Score = 111 bits (236), Expect = 1e-023
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF ++
Sbjct: 100 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 279
Query: 253 TNXXXXXNLKXXXXXXXQK 309
N NL+ QK
Sbjct: 280 ANNPYAMNLRFLAADSLQK 336
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 111 bits (236), Expect = 1e-023
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF ++
Sbjct: 27663433 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 27663612
Query: 253 TNXXXXXNLKXXXXXXXQK 309
N NL+ QK
Sbjct: 27663613 ANNPYAMNLRFLAADSLQK 27663669
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 26746832 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 26747011
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 26747012 TNNPYAMNLRFIAADTLQK 26747068
Score = 108 bits (231), Expect = 6e-023
Identities = 43/93 (46%), Positives = 60/93 (64%)
Frame = +1 / -2
Query: 31 HLEYSSVQVPPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFV 210
H + + P MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FV
Sbjct: 8183437 HTQNYTFATPANNNMITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFV 8183258
Query: 211 AKFSIPLLSFQILSTNXXXXXNLKXXXXXXXQK 309
A F++PLLSF +S+N NL+ QK
Sbjct: 8183257 AIFAVPLLSFHFISSNNPYAMNLRFIAADTLQK 8183159
>gb|AF087016.1|AF087016 Arabidopsis thaliana auxin transporter splice variant b (PIN4)
mRNA, complete cds
Length = 2264
Score = 110 bits (235), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / +1
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 25 PTGKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 204
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 205 HFISTNDPYAMNFRFVAADTLQKIIMLV 288
>gb|AV829212.1|AV829212 AV829212 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-41-E02 5',
mRNA sequence
Length = 584
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / +3
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 114 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 293
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 294 HFISTNDPYAMNFRFVAADTLQKIIMLV 377
>gb|BX839961.1|BX839961 BX839961 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH58ZG12 5PRIM,
mRNA sequence
Length = 948
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / +3
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 96 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 275
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 276 HFISTNDPYAMNFRFVAADTLQKIIMLV 359
>gb|BX840155.1|BX840155 BX840155 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH84ZF07 5PRIM,
mRNA sequence
Length = 972
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / +1
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 61 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 240
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 241 HFISTNDPYAMNFRFVAADTLQKIIMLV 324
>gb|AY091009.1| Arabidopsis thaliana putative auxin transport protein (At2g01420)
mRNA, complete cds
Length = 2404
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / +2
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 113 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 292
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 293 HFISTNDPYAMNFRFVAADTLQKIIMLV 376
>gb|BT008691.1| Arabidopsis thaliana clone RAFL09-75-E06 (R19634) putative auxin
transport protein (At2g01420) mRNA, complete cds
Length = 2358
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / +1
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 118 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 297
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 298 HFISTNDPYAMNFRFVAADTLQKIIMLV 381
>gb|AC005560.3| Arabidopsis thaliana chromosome 2 clone F2I9 map rga, complete
sequence
Length = 103125
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / -1
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 9771 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 9592
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 9591 HFISTNDPYAMNFRFVAADTLQKIIMLV 9508
>gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete
sequence
Length = 94029
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / -2
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 92807 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 92628
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 92627 HFISTNDPYAMNFRFVAADTLQKIIMLV 92544
>emb|BX820960.1|CNS0A83S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH86ZB02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2205
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / +2
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 98 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 277
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 278 HFISTNDPYAMNFRFVAADTLQKIIMLV 361
>emb|CR383955.1| Arabidopsis thaliana transposon insertion STS GT_3.106443, sequence
tagged site
Length = 356
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / -2
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 295 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 116
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 115 HFISTNDPYAMNFRFVAADTLQKIIMLV 32
>ref|NM_126203.2| Arabidopsis thaliana PIN4 (PIN-FORMED 4); auxin:hydrogen symporter/
transporter AT2G01420 (PIN4) transcript variant
AT2G01420.1 mRNA, complete cds
Length = 2341
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / +1
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 118 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 297
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 298 HFISTNDPYAMNFRFVAADTLQKIIMLV 381
>ref|NM_179592.1| Arabidopsis thaliana PIN4 (PIN-FORMED 4); auxin:hydrogen symporter
AT2G01420 (PIN4) transcript variant AT2G01420.2 mRNA,
complete cds
Length = 2353
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / +1
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 118 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 297
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 298 HFISTNDPYAMNFRFVAADTLQKIIMLV 381
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 110 bits (234), Expect = 2e-023
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1 / -1
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 183210 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 183031
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLL 324
+STN N + QK L+
Sbjct: 183030 HFISTNDPYAMNFRFVAADTLQKIIMLV 182947
>gb|AV825669.1|AV825669 AV825669 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-12-J09 5',
mRNA sequence
Length = 559
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 118 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 297
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 298 TNNPYAMNLRFIAADTLQK 354
>gb|AV827019.1|AV827019 AV827019 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-10-I20 5',
mRNA sequence
Length = 614
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 80 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 259
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 260 TNNPYAMNLRFIAADTLQK 316
>gb|AV829945.1|AV829945 AV829945 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-59-C11 5',
mRNA sequence
Length = 561
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 93 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 272
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 273 TNNPYAMNLRFIAADTLQK 329
>gb|AF087818.1|AF087818 Arabidopsis thaliana auxin transport protein (PIN3) mRNA, complete
cds
Length = 2499
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 106 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 285
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 286 TNNPYAMNLRFIAADTLQK 342
>gb|AY136327.1| Arabidopsis thaliana putative auxin transport protein REH1
(At1g70940) mRNA, complete cds
Length = 2489
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 117 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 296
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 297 TNNPYAMNLRFIAADTLQK 353
>emb|AX506152.1| Sequence 847 from Patent WO0216655
Length = 1923
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 1 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 180
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 181 TNNPYAMNLRFIAADTLQK 237
>gb|BT002085.1| Arabidopsis thaliana putative auxin transport protein REH1
(At1g70940) mRNA, complete cds
Length = 2380
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 1 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 180
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 181 TNNPYAMNLRFIAADTLQK 237
>gb|AC008148.2|AC008148 Arabidopsis thaliana chromosome I BAC F15H11 genomic sequence, complete
sequence
Length = 110514
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 60770 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60949
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 60950 TNNPYAMNLRFIAADTLQK 61006
>ref|NM_105762.2| Arabidopsis thaliana PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/
transporter AT1G70940 (PIN3) mRNA, complete cds
Length = 2563
Score = 109 bits (233), Expect = 3e-023
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 117 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 296
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 297 TNNPYAMNLRFIAADTLQK 353
>gb|AV529683.1|AV529683 AV529683 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL43g10R 5', mRNA
sequence
Length = 460
Score = 109 bits (232), Expect = 4e-023
Identities = 43/94 (45%), Positives = 61/94 (64%)
Frame = +1 / +1
Query: 31 HLEYSSVQVPPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFV 210
H + + P MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FV
Sbjct: 103 HTQNYTFATPANNNMITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFV 282
Query: 211 AKFSIPLLSFQILSTNXXXXXNLKXXXXXXXQKS 312
A F++PLLSF +S+N NL+ QK+
Sbjct: 283 AIFAVPLLSFHFISSNNPYAMNLRFIAADTLQKT 384
>gb|AV826037.1|AV826037 AV826037 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-08-E02 5',
mRNA sequence
Length = 607
Score = 108 bits (231), Expect = 6e-023
Identities = 43/93 (46%), Positives = 60/93 (64%)
Frame = +1 / +3
Query: 31 HLEYSSVQVPPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFV 210
H + + P MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FV
Sbjct: 126 HTQNYTFATPANNNMITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFV 305
Query: 211 AKFSIPLLSFQILSTNXXXXXNLKXXXXXXXQK 309
A F++PLLSF +S+N NL+ QK
Sbjct: 306 AIFAVPLLSFHFISSNNPYAMNLRFIAADTLQK 404
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 108 bits (231), Expect = 6e-023
Identities = 43/93 (46%), Positives = 60/93 (64%)
Frame = +1 / -1
Query: 31 HLEYSSVQVPPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFV 210
H + + P MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FV
Sbjct: 8183202 HTQNYTFATPANNNMITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFV 8183023
Query: 211 AKFSIPLLSFQILSTNXXXXXNLKXXXXXXXQK 309
A F++PLLSF +S+N NL+ QK
Sbjct: 8183022 AIFAVPLLSFHFISSNNPYAMNLRFIAADTLQK 8182924
>gb|AY052356.1| Arabidopsis thaliana At1g23080/T26J12_14 mRNA, complete cds
Length = 2792
Score = 108 bits (231), Expect = 6e-023
Identities = 43/93 (46%), Positives = 60/93 (64%)
Frame = +1 / +3
Query: 31 HLEYSSVQVPPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFV 210
H + + P MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FV
Sbjct: 126 HTQNYTFATPANNNMITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFV 305
Query: 211 AKFSIPLLSFQILSTNXXXXXNLKXXXXXXXQK 309
A F++PLLSF +S+N NL+ QK
Sbjct: 306 AIFAVPLLSFHFISSNNPYAMNLRFIAADTLQK 404
>gb|AC002311.1| Arabidopsis thaliana chromosome I BAC T26J12 genomic sequence, complete
sequence
Length = 85855
Score = 108 bits (231), Expect = 6e-023
Identities = 43/93 (46%), Positives = 60/93 (64%)
Frame = +1 / +2
Query: 31 HLEYSSVQVPPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFV 210
H + + P MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FV
Sbjct: 67211 HTQNYTFATPANNNMITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFV 67390
Query: 211 AKFSIPLLSFQILSTNXXXXXNLKXXXXXXXQK 309
A F++PLLSF +S+N NL+ QK
Sbjct: 67391 AIFAVPLLSFHFISSNNPYAMNLRFIAADTLQK 67489
>ref|NM_102156.1| Arabidopsis thaliana PIN7 (PIN-FORMED 7); auxin:hydrogen symporter
AT1G23080 (PIN7) transcript variant AT1G23080.2 mRNA,
complete cds
Length = 2787
Score = 108 bits (231), Expect = 6e-023
Identities = 43/93 (46%), Positives = 60/93 (64%)
Frame = +1 / +3
Query: 31 HLEYSSVQVPPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFV 210
H + + P MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FV
Sbjct: 123 HTQNYTFATPANNNMITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFV 302
Query: 211 AKFSIPLLSFQILSTNXXXXXNLKXXXXXXXQK 309
A F++PLLSF +S+N NL+ QK
Sbjct: 303 AIFAVPLLSFHFISSNNPYAMNLRFIAADTLQK 401
>ref|NM_179369.1| Arabidopsis thaliana PIN7 (PIN-FORMED 7); auxin:hydrogen symporter/
transporter AT1G23080 (PIN7) transcript variant
AT1G23080.1 mRNA, complete cds
Length = 2215
Score = 108 bits (231), Expect = 6e-023
Identities = 43/93 (46%), Positives = 60/93 (64%)
Frame = +1 / +3
Query: 31 HLEYSSVQVPPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFV 210
H + + P MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FV
Sbjct: 123 HTQNYTFATPANNNMITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFV 302
Query: 211 AKFSIPLLSFQILSTNXXXXXNLKXXXXXXXQK 309
A F++PLLSF +S+N NL+ QK
Sbjct: 303 AIFAVPLLSFHFISSNNPYAMNLRFIAADTLQK 401
>gb|AF162834.1|AF162834 AF162834 Arabidopsis thaliana immature siliques Arabidopsis
thaliana cDNA clone AtGER2 similar to pin-formed1
(PIN1), mRNA sequence
Length = 796
Score = 107 bits (228), Expect = 2e-022
Identities = 43/84 (51%), Positives = 58/84 (69%)
Frame = +1 / +3
Query: 58 PPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLS 237
P MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLS
Sbjct: 6 PSNNNMITWXDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLS 185
Query: 238 FQILSTNXXXXXNLKXXXXXXXQK 309
F +S+N NL+ QK
Sbjct: 186 FHFISSNNPYAMNLRFSAADTLQK 257
>gb|AF087820.1|AF087820 Arabidopsis thaliana auxin transport protein (PIN7) mRNA, complete
cds
Length = 2071
Score = 106 bits (227), Expect = 2e-022
Identities = 42/84 (50%), Positives = 57/84 (67%)
Frame = +1 / +3
Query: 58 PPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLS 237
P MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLS
Sbjct: 24 PANNNMITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLS 203
Query: 238 FQILSTNXXXXXNLKXXXXXXXQK 309
F +S+N NL+ QK
Sbjct: 204 FHFISSNNPYAMNLRFIAADTLQK 275
>emb|AX506153.1| Sequence 848 from Patent WO0216655
Length = 1860
Score = 106 bits (226), Expect = 3e-022
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 1 MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 180
Query: 253 TNXXXXXNLKXXXXXXXQK 309
+N NL+ QK
Sbjct: 181 SNNPYAMNLRFIAADTLQK 237
>emb|AX651788.1| Sequence 641 from Patent WO03000898
Length = 1860
Score = 106 bits (226), Expect = 3e-022
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ +Y VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 1 MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 180
Query: 253 TNXXXXXNLKXXXXXXXQK 309
+N NL+ QK
Sbjct: 181 SNNPYAMNLRFIAADTLQK 237
>emb|AL954303.1| Arabidopsis thaliana transposon insertion STS GT_3.270, sequence
tagged site
Length = 527
Score = 106 bits (226), Expect = 3e-022
Identities = 42/78 (53%), Positives = 54/78 (69%)
Frame = +1 / -1
Query: 91 IYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILSTNXXXX 270
+Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF +STN
Sbjct: 344 LYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYA 165
Query: 271 XNLKXXXXXXXQKSXXLL 324
N + QK L+
Sbjct: 164 MNFRFVAADTLQKIIMLV 111
>gb|BH172320.1|BH172320 SALK_005544 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_005544, DNA sequence
Length = 448
Score = 105 bits (225), Expect = 4e-022
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL +PLYV MI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 50 MIS*HDLYTVLTAVIPLYVDMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 229
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 230 TNNPYAMNLRFIAADTLQK 286
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 103 bits (220), Expect = 2e-021
Identities = 48/91 (52%), Positives = 59/91 (64%)
Frame = +1 / -2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS IYHV+ TVPLYV+M + +LS + KLF+PEQC+GINKFVAKFSIPLLSFQI+S
Sbjct: 4676913 MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 4676734
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASR 345
N + K QK ++ A R
Sbjct: 4676733 ENNPFKMSPKLILSDILQKFLVVVVLAMVLR 4676641
>emb|AL391146.1|ATF2G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F2G14 (ESSA project)
Length = 85992
Score = 103 bits (220), Expect = 2e-021
Identities = 48/91 (52%), Positives = 59/91 (64%)
Frame = +1 / -2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS IYHV+ TVPLYV+M + +LS + KLF+PEQC+GINKFVAKFSIPLLSFQI+S
Sbjct: 78686 MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 78507
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASR 345
N + K QK ++ A R
Sbjct: 78506 ENNPFKMSPKLILSDILQKFLVVVVLAMVLR 78414
>ref|NM_121514.1| Arabidopsis thaliana auxin:hydrogen symporter/ transporter
AT5G15100 mRNA, complete cds
Length = 1104
Score = 103 bits (220), Expect = 2e-021
Identities = 48/91 (52%), Positives = 59/91 (64%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS IYHV+ TVPLYV+M + +LS + KLF+PEQC+GINKFVAKFSIPLLSFQI+S
Sbjct: 1 MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 180
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASR 345
N + K QK ++ A R
Sbjct: 181 ENNPFKMSPKLILSDILQKFLVVVVLAMVLR 273
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 103 bits (220), Expect = 2e-021
Identities = 48/91 (52%), Positives = 59/91 (64%)
Frame = +1 / -3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS IYHV+ TVPLYV+M + +LS + KLF+PEQC+GINKFVAKFSIPLLSFQI+S
Sbjct: 4893940 MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 4893761
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASR 345
N + K QK ++ A R
Sbjct: 4893760 ENNPFKMSPKLILSDILQKFLVVVVLAMVLR 4893668
Score = 102 bits (217), Expect = 5e-021
Identities = 41/79 (51%), Positives = 53/79 (67%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ +Y VL VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 23117991 MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 23118170
Query: 253 TNXXXXXNLKXXXXXXXQK 309
+N N QK
Sbjct: 23118171 SNDPYAMNYHFLAADSLQK 23118227
>gb|BP864386.1|BP864386 BP864386 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-70-B12 5',
mRNA sequence
Length = 383
Score = 102 bits (218), Expect = 4e-021
Identities = 40/65 (61%), Positives = 51/65 (78%)
Frame = +1 / +2
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MI+ +Y VL VPLYVAMI+AY S+QWWK+F+P+QCSGIN+FVA F++PLLSF
Sbjct: 176 PPEKMITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSF 355
Query: 241 QILST 255
+ST
Sbjct: 356 HFIST 370
>gb|BZ291992.1|BZ291992 SALK_122916.49.40.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_122916.49.40.x,
DNA sequence
Length = 443
Score = 102 bits (217), Expect = 5e-021
Identities = 41/79 (51%), Positives = 53/79 (67%)
Frame = +1 / -3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ +Y VL VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 264 MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 85
Query: 253 TNXXXXXNLKXXXXXXXQK 309
+N N QK
Sbjct: 84 SNDPYAMNYHFLAADSLQK 28
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 587,359,683
Number of Sequences: 1013581
Number of extensions: 5974647
Number of successful extensions: 166056
Number of sequences better than 1.0e-020: 79
length of database: 302,980,290
effective HSP length: 53
effective length of database: 249,260,497
effective search space used: 16451192802
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)