TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL35a05.yg.2.1
(567 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 148 2e-039
gb|AC007576.3| Arabidopsis thaliana chromosome I BAC F7A19 ... 148 2e-039
gb|AC068197.4|AC068197 Genomic sequence for Arabidopsis tha... 148 2e-039
gb|U56141.1|ATU56141 Arabidopsis thaliana EMB30 gene, compl... 148 2e-039
gb|U36433.1|ATU36433 Arabidopsis thaliana pattern-formation... 148 2e-039
ref|NM_101264.3| Arabidopsis thaliana GN (GNOM) AT1G13980 (... 148 2e-039
gb|U56140.1|ATU56140 Arabidopsis thaliana EMB30 mRNA, compl... 148 2e-039
dbj|AK220827.1| Arabidopsis thaliana mRNA for putative patt... 148 2e-039
gb|U36432.1|ATU36432 Arabidopsis thaliana pattern-formation... 147 4e-039
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 148 1e-034
gb|BH857557.1|BH857557 SALK_045424.55.00.x Arabidopsis thal... 106 2e-030
dbj|AB009054.1| Arabidopsis thaliana genomic DNA, chromosom... 122 9e-027
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 122 9e-027
ref|NM_123312.2| Arabidopsis thaliana unknown protein AT5G3... 122 9e-027
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 122 9e-027
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 148 bits (318), Expect(2) = 2e-039
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +3
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 4792260 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 4792439
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRL 140
V+ FG+D KARMAT +FTIA YGD+IR+GWRNI+DCIL HK+GLLP R+
Sbjct: 4792440 VLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARV 4792595
Score = 35.9 bits (72), Expect(2) = 2e-039
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3 / +3
Query: 94 PGKHTSSAPQVLPISTPRKTYGLMGRFSQLL 2
P ++ S+ + + TPR++ GLMGRFSQLL
Sbjct: 4792650 PLANSLSSAHLQSMGTPRRSSGLMGRFSQLL 4792742
>gb|AC007576.3| Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, complete
sequence
Length = 112126
Score = 148 bits (318), Expect(2) = 2e-039
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +1
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 35491 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 35670
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRL 140
V+ FG+D KARMAT +FTIA YGD+IR+GWRNI+DCIL HK+GLLP R+
Sbjct: 35671 VLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARV 35826
Score = 35.9 bits (72), Expect(2) = 2e-039
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3 / +1
Query: 94 PGKHTSSAPQVLPISTPRKTYGLMGRFSQLL 2
P ++ S+ + + TPR++ GLMGRFSQLL
Sbjct: 35881 PLANSLSSAHLQSMGTPRRSSGLMGRFSQLL 35973
>gb|AC068197.4|AC068197 Genomic sequence for Arabidopsis thaliana BAC F16A14 from chromosome I,
complete sequence
Length = 99547
Score = 148 bits (318), Expect(2) = 2e-039
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +3
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 67701 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 67880
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRL 140
V+ FG+D KARMAT +FTIA YGD+IR+GWRNI+DCIL HK+GLLP R+
Sbjct: 67881 VLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARV 68036
Score = 35.9 bits (72), Expect(2) = 2e-039
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3 / +3
Query: 94 PGKHTSSAPQVLPISTPRKTYGLMGRFSQLL 2
P ++ S+ + + TPR++ GLMGRFSQLL
Sbjct: 68091 PLANSLSSAHLQSMGTPRRSSGLMGRFSQLL 68183
>gb|U56141.1|ATU56141 Arabidopsis thaliana EMB30 gene, complete cds
Length = 7512
Score = 148 bits (318), Expect(2) = 2e-039
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +2
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 4976 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 5155
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRL 140
V+ FG+D KARMAT +FTIA YGD+IR+GWRNI+DCIL HK+GLLP R+
Sbjct: 5156 VLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARV 5311
Score = 35.9 bits (72), Expect(2) = 2e-039
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3 / +2
Query: 94 PGKHTSSAPQVLPISTPRKTYGLMGRFSQLL 2
P ++ S+ + + TPR++ GLMGRFSQLL
Sbjct: 5366 PLANSLSSAHLQSMGTPRRSSGLMGRFSQLL 5458
>gb|U36433.1|ATU36433 Arabidopsis thaliana pattern-formation (GNOM) gene, complete cds
Length = 6686
Score = 148 bits (318), Expect(2) = 2e-039
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +1
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 4093 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 4272
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRL 140
V+ FG+D KARMAT +FTIA YGD+IR+GWRNI+DCIL HK+GLLP R+
Sbjct: 4273 VLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARV 4428
Score = 35.9 bits (72), Expect(2) = 2e-039
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3 / +1
Query: 94 PGKHTSSAPQVLPISTPRKTYGLMGRFSQLL 2
P ++ S+ + + TPR++ GLMGRFSQLL
Sbjct: 4483 PLANSLSSAHLQSMGTPRRSSGLMGRFSQLL 4575
>ref|NM_101264.3| Arabidopsis thaliana GN (GNOM) AT1G13980 (GN) mRNA, complete cds
Length = 4835
Score = 148 bits (318), Expect(2) = 2e-039
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +1
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 2620 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 2799
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRL 140
V+ FG+D KARMAT +FTIA YGD+IR+GWRNI+DCIL HK+GLLP R+
Sbjct: 2800 VLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARV 2955
Score = 35.9 bits (72), Expect(2) = 2e-039
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3 / +1
Query: 94 PGKHTSSAPQVLPISTPRKTYGLMGRFSQLL 2
P ++ S+ + + TPR++ GLMGRFSQLL
Sbjct: 3010 PLANSLSSAHLQSMGTPRRSSGLMGRFSQLL 3102
>gb|U56140.1|ATU56140 Arabidopsis thaliana EMB30 mRNA, complete cds
Length = 4697
Score = 148 bits (318), Expect(2) = 2e-039
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +1
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 2620 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 2799
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRL 140
V+ FG+D KARMAT +FTIA YGD+IR+GWRNI+DCIL HK+GLLP R+
Sbjct: 2800 VLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARV 2955
Score = 35.9 bits (72), Expect(2) = 2e-039
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3 / +1
Query: 94 PGKHTSSAPQVLPISTPRKTYGLMGRFSQLL 2
P ++ S+ + + TPR++ GLMGRFSQLL
Sbjct: 3010 PLANSLSSAHLQSMGTPRRSSGLMGRFSQLL 3102
>dbj|AK220827.1| Arabidopsis thaliana mRNA for putative pattern formation protein
EMB30, complete cds, clone: RAFL22-34-L14
Length = 4037
Score = 148 bits (318), Expect(2) = 2e-039
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +2
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 1916 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 2095
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRL 140
V+ FG+D KARMAT +FTIA YGD+IR+GWRNI+DCIL HK+GLLP R+
Sbjct: 2096 VLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARV 2251
Score = 35.9 bits (72), Expect(2) = 2e-039
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3 / +2
Query: 94 PGKHTSSAPQVLPISTPRKTYGLMGRFSQLL 2
P ++ S+ + + TPR++ GLMGRFSQLL
Sbjct: 2306 PLANSLSSAHLQSMGTPRRSSGLMGRFSQLL 2398
>gb|U36432.1|ATU36432 Arabidopsis thaliana pattern-formation (GNOM) mRNA, complete cds
Length = 4794
Score = 147 bits (316), Expect(2) = 4e-039
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +2
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 2579 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 2758
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRL 140
V+ FG+D KARMAT +FTIA YGD+IR+GWRNI+DCIL HK+GLLP R+
Sbjct: 2759 VLAFGDDGKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARV 2914
Score = 35.9 bits (72), Expect(2) = 4e-039
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -3 / +2
Query: 94 PGKHTSSAPQVLPISTPRKTYGLMGRFSQLL 2
P ++ S+ + + TPR++ GLMGRFSQLL
Sbjct: 2969 PLANSLSSAHLQSMGTPRRSSGLMGRFSQLL 3061
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 148 bits (318), Expect = 1e-034
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +2
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 4792436 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 4792615
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRL 140
V+ FG+D KARMAT +FTIA YGD+IR+GWRNI+DCIL HK+GLLP R+
Sbjct: 4792616 VLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARV 4792771
>gb|BH857557.1|BH857557 SALK_045424.55.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_045424.55.00.x,
DNA sequence
Length = 420
Score = 106 bits (227), Expect(2) = 2e-030
Identities = 46/91 (50%), Positives = 60/91 (65%)
Frame = -3 / +3
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A+SVV E V CIDG L++AK++ +H V+L KFTTLLN S +D+P
Sbjct: 18 AISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEP 197
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSG 203
V+ FG+D KARMAT +FTIA YGD+IR+G
Sbjct: 198 VLAFGDDAKARMATITIFTIANKYGDYIRTG 290
Score = 47.3 bits (97), Expect(2) = 2e-030
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = -3 / +1
Query: 205 GWRNIIDCILXXHKIGLLPGRL 140
GWRNI+DCIL HK+GLLP R+
Sbjct: 289 GWRNILDCILRLHKLGLLPARV 354
>dbj|AB009054.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUL8
Length = 83450
Score = 122 bits (261), Expect = 9e-027
Identities = 55/136 (40%), Positives = 75/136 (55%)
Frame = -3 / +2
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A SVV E VL CIDG L++AKL+ YH V+L KFT D+
Sbjct: 73601 ATSVVFEQAEQEDVLRRCIDGLLAIAKLSAYYHLNSVLDDLVVSLCKFTPFFAPLSADEA 73780
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRLXXXXXXXX 116
V+V GED +ARMATEAVF IA YGD+I +GW+NI++C+L +K+ +LP +
Sbjct: 73781 VLVLGEDARARMATEAVFLIANKYGDYISAGWKNILECVLSLNKLHILPDHIASDAADDP 73960
Query: 115 XXXXXSLPGKHTSSAP 68
+L + S+ P
Sbjct: 73961 ELSTSNLEQEKPSANP 74008
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 122 bits (261), Expect = 9e-027
Identities = 55/136 (40%), Positives = 75/136 (55%)
Frame = -3 / +3
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A SVV E VL CIDG L++AKL+ YH V+L KFT D+
Sbjct: 14544543 ATSVVFEQAEQEDVLRRCIDGLLAIAKLSAYYHLNSVLDDLVVSLCKFTPFFAPLSADEA 14544722
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRLXXXXXXXX 116
V+V GED +ARMATEAVF IA YGD+I +GW+NI++C+L +K+ +LP +
Sbjct: 14544723 VLVLGEDARARMATEAVFLIANKYGDYISAGWKNILECVLSLNKLHILPDHIASDAADDP 14544902
Query: 115 XXXXXSLPGKHTSSAP 68
+L + S+ P
Sbjct: 14544903 ELSTSNLEQEKPSANP 14544950
>ref|NM_123312.2| Arabidopsis thaliana unknown protein AT5G39500 mRNA, complete cds
Length = 4467
Score = 122 bits (261), Expect = 9e-027
Identities = 55/136 (40%), Positives = 75/136 (55%)
Frame = -3 / +1
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A SVV E VL CIDG L++AKL+ YH V+L KFT D+
Sbjct: 2398 ATSVVFEQAEQEDVLRRCIDGLLAIAKLSAYYHLNSVLDDLVVSLCKFTPFFAPLSADEA 2577
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRLXXXXXXXX 116
V+V GED +ARMATEAVF IA YGD+I +GW+NI++C+L +K+ +LP +
Sbjct: 2578 VLVLGEDARARMATEAVFLIANKYGDYISAGWKNILECVLSLNKLHILPDHIASDAADDP 2757
Query: 115 XXXXXSLPGKHTSSAP 68
+L + S+ P
Sbjct: 2758 ELSTSNLEQEKPSANP 2805
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 122 bits (261), Expect = 9e-027
Identities = 55/136 (40%), Positives = 75/136 (55%)
Frame = -3 / +1
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
A SVV E VL CIDG L++AKL+ YH V+L KFT D+
Sbjct: 15835204 ATSVVFEQAEQEDVLRRCIDGLLAIAKLSAYYHLNSVLDDLVVSLCKFTPFFAPLSADEA 15835383
Query: 295 VIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRLXXXXXXXX 116
V+V GED +ARMATEAVF IA YGD+I +GW+NI++C+L +K+ +LP +
Sbjct: 15835384 VLVLGEDARARMATEAVFLIANKYGDYISAGWKNILECVLSLNKLHILPDHIASDAADDP 15835563
Query: 115 XXXXXSLPGKHTSSAP 68
+L + S+ P
Sbjct: 15835564 ELSTSNLEQEKPSANP 15835611
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 835,906,511
Number of Sequences: 1013581
Number of extensions: 9439145
Number of successful extensions: 122550
Number of sequences better than 1.0e-020: 19
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 32882033555
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)