TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG16f05.yg.2.1
(585 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcri... 93 4e-035
gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response tr... 93 4e-035
gb|AF360313.1| Arabidopsis thaliana auxin response transcri... 93 4e-035
gb|AY056365.1| Arabidopsis thaliana auxin response transcri... 93 4e-035
gb|AF336917.1| Arabidopsis thaliana auxin response transcri... 93 4e-035
emb|AX506835.1| Sequence 1530 from Patent WO0216655 93 4e-035
emb|AX651787.1| Sequence 640 from Patent WO03000898 93 4e-035
gb|AF007788.1|AF007788 Arabidopsis thaliana ETTIN gene, com... 51 5e-024
dbj|AB011483.1| Arabidopsis thaliana genomic DNA, chromosom... 52 5e-023
>ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcription factor AT2G33860
(ETT) mRNA, complete cds
Length = 2160
Score = 92.7 bits (196), Expect(2) = 4e-035
Identities = 43/116 (37%), Positives = 61/116 (52%)
Frame = -1 / +3
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL GD G LG A Q + + + ++ + VA ++
Sbjct: 852 VNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAIST 1031
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVV 238
SVF ISYNP+A+ S +IIP KFLK +++P CIG R + +ED SERRS ++
Sbjct: 1032 HSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGII 1199
Score = 77.6 bits (163), Expect(2) = 4e-035
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = -1 / +3
Query: 258 RRSGVVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIE 118
R G++ IS++DP++WPGSKWR LLVRW+D Q RVSPWEIE
Sbjct: 1182 RSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIE 1322
>gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response transcription factor 3 (ARF3)
mRNA, complete cds
Length = 2124
Score = 92.7 bits (196), Expect(2) = 4e-035
Identities = 43/116 (37%), Positives = 61/116 (52%)
Frame = -1 / +3
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL GD G LG A Q + + + ++ + VA ++
Sbjct: 852 VNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAIST 1031
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVV 238
SVF ISYNP+A+ S +IIP KFLK +++P CIG R + +ED SERRS ++
Sbjct: 1032 HSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGII 1199
Score = 77.6 bits (163), Expect(2) = 4e-035
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = -1 / +3
Query: 258 RRSGVVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIE 118
R G++ IS++DP++WPGSKWR LLVRW+D Q RVSPWEIE
Sbjct: 1182 RSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIE 1322
>gb|AF360313.1| Arabidopsis thaliana auxin response transcription factor 3
(ETTIN/ARF3) (At2g33860) mRNA, complete cds
Length = 2114
Score = 92.7 bits (196), Expect(2) = 4e-035
Identities = 43/116 (37%), Positives = 61/116 (52%)
Frame = -1 / +3
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL GD G LG A Q + + + ++ + VA ++
Sbjct: 792 VNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAIST 971
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVV 238
SVF ISYNP+A+ S +IIP KFLK +++P CIG R + +ED SERRS ++
Sbjct: 972 HSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGII 1139
Score = 77.6 bits (163), Expect(2) = 4e-035
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = -1 / +3
Query: 258 RRSGVVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIE 118
R G++ IS++DP++WPGSKWR LLVRW+D Q RVSPWEIE
Sbjct: 1122 RSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIE 1262
>gb|AY056365.1| Arabidopsis thaliana auxin response transcription factor 3
(At2g33860) mRNA, complete cds
Length = 1858
Score = 92.7 bits (196), Expect(2) = 4e-035
Identities = 43/116 (37%), Positives = 61/116 (52%)
Frame = -1 / +1
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL GD G LG A Q + + + ++ + VA ++
Sbjct: 694 VNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAIST 873
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVV 238
SVF ISYNP+A+ S +IIP KFLK +++P CIG R + +ED SERRS ++
Sbjct: 874 HSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGII 1041
Score = 77.6 bits (163), Expect(2) = 4e-035
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = -1 / +1
Query: 258 RRSGVVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIE 118
R G++ IS++DP++WPGSKWR LLVRW+D Q RVSPWEIE
Sbjct: 1024 RSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIE 1164
>gb|AF336917.1| Arabidopsis thaliana auxin response transcription factor 3
(At2g33860) mRNA, complete cds
Length = 1827
Score = 92.7 bits (196), Expect(2) = 4e-035
Identities = 43/116 (37%), Positives = 61/116 (52%)
Frame = -1 / +1
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL GD G LG A Q + + + ++ + VA ++
Sbjct: 694 VNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAIST 873
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVV 238
SVF ISYNP+A+ S +IIP KFLK +++P CIG R + +ED SERRS ++
Sbjct: 874 HSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGII 1041
Score = 77.6 bits (163), Expect(2) = 4e-035
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = -1 / +1
Query: 258 RRSGVVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIE 118
R G++ IS++DP++WPGSKWR LLVRW+D Q RVSPWEIE
Sbjct: 1024 RSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIE 1164
>emb|AX506835.1| Sequence 1530 from Patent WO0216655
Length = 1827
Score = 92.7 bits (196), Expect(2) = 4e-035
Identities = 43/116 (37%), Positives = 61/116 (52%)
Frame = -1 / +1
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL GD G LG A Q + + + ++ + VA ++
Sbjct: 694 VNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAIST 873
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVV 238
SVF ISYNP+A+ S +IIP KFLK +++P CIG R + +ED SERRS ++
Sbjct: 874 HSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGII 1041
Score = 77.6 bits (163), Expect(2) = 4e-035
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = -1 / +1
Query: 258 RRSGVVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIE 118
R G++ IS++DP++WPGSKWR LLVRW+D Q RVSPWEIE
Sbjct: 1024 RSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIE 1164
>emb|AX651787.1| Sequence 640 from Patent WO03000898
Length = 1827
Score = 92.7 bits (196), Expect(2) = 4e-035
Identities = 43/116 (37%), Positives = 61/116 (52%)
Frame = -1 / +1
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL GD G LG A Q + + + ++ + VA ++
Sbjct: 694 VNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAIST 873
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVV 238
SVF ISYNP+A+ S +IIP KFLK +++P CIG R + +ED SERRS ++
Sbjct: 874 HSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGII 1041
Score = 77.6 bits (163), Expect(2) = 4e-035
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = -1 / +1
Query: 258 RRSGVVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIE 118
R G++ IS++DP++WPGSKWR LLVRW+D Q RVSPWEIE
Sbjct: 1024 RSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIE 1164
>gb|AF007788.1|AF007788 Arabidopsis thaliana ETTIN gene, complete cds
Length = 4054
Score = 51.5 bits (106), Expect(4) = 5e-024
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = -1 / +1
Query: 375 RATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERR 253
RA+ S +IIP KFLK +++P CIG R + +ED SERR
Sbjct: 2398 RASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERR 2520
Score = 51.0 bits (105), Expect(4) = 5e-024
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = -1 / +3
Query: 258 RRSGVVVRISEIDPMKWPGSKWRSLLVRWE 169
R G++ IS++DP++WPGSKWR LLV +E
Sbjct: 2613 RSPGIISGISDLDPIRWPGSKWRCLLVSYE 2702
Score = 38.6 bits (78), Expect(4) = 5e-024
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -1 / +2
Query: 552 VLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKNRSVFHISYNPR 373
VL GD G LG A Q + + + ++ + VA ++ SVF ISYNP+
Sbjct: 2033 VL*YRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPK 2212
Score = 35.9 bits (72), Expect(4) = 5e-024
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1 / +3
Query: 192 RSLLVRWEDGAECNGQDRVSPWEIE 118
R + VRW+D Q RVSPWEIE
Sbjct: 2799 RHIQVRWDDIVANGHQQRVSPWEIE 2873
>dbj|AB011483.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9
Length = 77298
Score = 51.9 bits (107), Expect(4) = 5e-023
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = -1 / -3
Query: 375 RATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERR 253
RAT +E++IPY K++ S+ PVCIG R + +D ERR
Sbjct: 30928 RATHAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPERR 30806
Score = 49.2 bits (101), Expect(4) = 5e-023
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = -1 / -1
Query: 270 DVSERRSGVVVRISEIDPMKWPGSKWRSLLVR 175
D+S R +GVV + ++DP +WP SKWR LLVR
Sbjct: 30738 DLSCRCAGVVTGVCDLDPYRWPNSKWRCLLVR 30643
Score = 33.6 bits (67), Expect(4) = 5e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / -1
Query: 180 VRWEDGAECNGQDRVSPWEIE 118
VRW++ + Q+RVSPWEI+
Sbjct: 30549 VRWDESFVSDHQERVSPWEID 30487
Score = 29.0 bits (57), Expect(4) = 5e-023
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -1 / -2
Query: 435 LTAVADSLKNRSVFHISYNPR 373
L+ VA+++ +S+FH+ Y+PR
Sbjct: 31085 LSLVANAVSTKSMFHVFYSPR 31023
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,064,913,923
Number of Sequences: 1013581
Number of extensions: 14096628
Number of successful extensions: 178529
Number of sequences better than 1.0e-020: 9
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 34365433565
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)