TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA10g02.yg.2.1
(277 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 123 1e-037
gb|AC004809.1|F13M7 Arabidopsis thaliana chromosome 1 BAC F... 123 1e-037
gb|AY078949.1| Arabidopsis thaliana At1g04920/F13M7_7 mRNA,... 123 1e-037
ref|NM_100370.2| Arabidopsis thaliana transferase, transfer... 123 1e-037
gb|BT002210.1| Arabidopsis thaliana At1g04920/F13M7_7 mRNA,... 123 1e-037
gb|AQ956011.1|AQ956011 LERAI30TF LERA Arabidopsis thaliana ... 106 6e-034
gb|AQ956012.1|AQ956012 LERAI30TR LERA Arabidopsis thaliana ... 106 6e-034
gb|AF296825.1|F5O24 Arabidopsis thaliana BAC F5O24 106 1e-033
gb|AY039911.1| Arabidopsis thaliana putative sucrose-phosph... 106 1e-033
ref|NM_122035.1| Arabidopsis thaliana transferase, transfer... 106 1e-033
gb|AY079334.1| Arabidopsis thaliana putative sucrose-phosph... 106 1e-033
emb|CQ805578.1| Sequence 1989 from Patent WO2004035798 106 1e-033
ref|NM_001036532.1| Arabidopsis thaliana unknown protein AT... 98 8e-030
ref|NM_117080.4| Arabidopsis thaliana transferase, transfer... 98 8e-030
emb|CQ805456.1| Sequence 1867 from Patent WO2004035798 98 8e-030
dbj|AK220698.1| Arabidopsis thaliana mRNA for sucrose-phosp... 98 4e-029
dbj|AK175938.1| Arabidopsis thaliana mRNA for sucrose-phosp... 95 1e-028
dbj|AK220923.1| Arabidopsis thaliana mRNA for sucrose-phosp... 95 1e-028
dbj|AK221092.1| Arabidopsis thaliana mRNA for sucrose-phosp... 95 1e-028
emb|AL360314.1|ATF2I11 Arabidopsis thaliana DNA chromosome ... 99 2e-028
emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5... 99 2e-028
ref|NM_121149.3| Arabidopsis thaliana unknown protein AT5G1... 99 2e-028
gb|AY069868.1| Arabidopsis thaliana AT5g11110/T5K6_100 mRNA... 99 2e-028
gb|BT002697.1| Arabidopsis thaliana At5g11110/T5K6_100 gene... 99 2e-028
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 123 2e-027
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 66 1e-026
emb|AL161516.2|ATCHRIV28 Arabidopsis thaliana DNA chromosom... 66 1e-026
emb|AL049487.1|ATF28M11 Arabidopsis thaliana DNA chromosome... 66 1e-026
gb|AV528430.1|AV528430 AV528430 Arabidopsis thaliana aboveg... 77 4e-025
gb|AV529117.1|AV529117 AV529117 Arabidopsis thaliana aboveg... 106 2e-022
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 106 2e-022
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 106 2e-022
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 123 bits (264), Expect(2) = 1e-037
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = -3 / -3
Query: 185 DGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
DG+ GES+GAYI+RIP GPRDKYL KE LWP++QEFVDGALAHILNMSK LGEQ+G G+
Sbjct: 1394854 DGDETGESSGAYIIRIPFGPRDKYLNKEILWPFVQEFVDGALAHILNMSKVLGEQIGKGK 1394675
Query: 5 P 3
P
Sbjct: 1394674 P 1394672
Score = 53.8 bits (111), Expect(2) = 1e-037
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -3 / -3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSN 186
RVDLFTRQ+ S +VDWSY EPTEML + +
Sbjct: 1394947 RVDLFTRQICSSEVDWSYAEPTEMLTTAED 1394858
>gb|AC004809.1|F13M7 Arabidopsis thaliana chromosome 1 BAC F13M7 sequence, complete sequence
Length = 89713
Score = 123 bits (264), Expect(2) = 1e-037
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = -3 / +3
Query: 185 DGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
DG+ GES+GAYI+RIP GPRDKYL KE LWP++QEFVDGALAHILNMSK LGEQ+G G+
Sbjct: 27816 DGDETGESSGAYIIRIPFGPRDKYLNKEILWPFVQEFVDGALAHILNMSKVLGEQIGKGK 27995
Query: 5 P 3
P
Sbjct: 27996 P 27998
Score = 53.8 bits (111), Expect(2) = 1e-037
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -3 / +3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSN 186
RVDLFTRQ+ S +VDWSY EPTEML + +
Sbjct: 27723 RVDLFTRQICSSEVDWSYAEPTEMLTTAED 27812
>gb|AY078949.1| Arabidopsis thaliana At1g04920/F13M7_7 mRNA, complete cds
Length = 3471
Score = 123 bits (264), Expect(2) = 1e-037
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = -3 / +1
Query: 185 DGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
DG+ GES+GAYI+RIP GPRDKYL KE LWP++QEFVDGALAHILNMSK LGEQ+G G+
Sbjct: 847 DGDETGESSGAYIIRIPFGPRDKYLNKEILWPFVQEFVDGALAHILNMSKVLGEQIGKGK 1026
Query: 5 P 3
P
Sbjct: 1027 P 1029
Score = 53.8 bits (111), Expect(2) = 1e-037
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSN 186
RVDLFTRQ+ S +VDWSY EPTEML + +
Sbjct: 754 RVDLFTRQICSSEVDWSYAEPTEMLTTAED 843
>ref|NM_100370.2| Arabidopsis thaliana transferase, transferring glycosyl groups
AT1G04920 mRNA, complete cds
Length = 3469
Score = 123 bits (264), Expect(2) = 1e-037
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = -3 / +1
Query: 185 DGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
DG+ GES+GAYI+RIP GPRDKYL KE LWP++QEFVDGALAHILNMSK LGEQ+G G+
Sbjct: 847 DGDETGESSGAYIIRIPFGPRDKYLNKEILWPFVQEFVDGALAHILNMSKVLGEQIGKGK 1026
Query: 5 P 3
P
Sbjct: 1027 P 1029
Score = 53.8 bits (111), Expect(2) = 1e-037
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSN 186
RVDLFTRQ+ S +VDWSY EPTEML + +
Sbjct: 754 RVDLFTRQICSSEVDWSYAEPTEMLTTAED 843
>gb|BT002210.1| Arabidopsis thaliana At1g04920/F13M7_7 mRNA, complete cds
Length = 3189
Score = 123 bits (264), Expect(2) = 1e-037
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = -3 / +1
Query: 185 DGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
DG+ GES+GAYI+RIP GPRDKYL KE LWP++QEFVDGALAHILNMSK LGEQ+G G+
Sbjct: 739 DGDETGESSGAYIIRIPFGPRDKYLNKEILWPFVQEFVDGALAHILNMSKVLGEQIGKGK 918
Query: 5 P 3
P
Sbjct: 919 P 921
Score = 53.8 bits (111), Expect(2) = 1e-037
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSN 186
RVDLFTRQ+ S +VDWSY EPTEML + +
Sbjct: 646 RVDLFTRQICSSEVDWSYAEPTEMLTTAED 735
>gb|AQ956011.1|AQ956011 LERAI30TF LERA Arabidopsis thaliana genomic clone LERAI30, DNA
sequence
Length = 734
Score = 106 bits (227), Expect(2) = 6e-034
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3 / -3
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA++HI+ MS LGEQVG G+P
Sbjct: 372 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAMSHIMQMSNVLGEQVGVGKP 202
Score = 57.4 bits (119), Expect(2) = 6e-034
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -3 / -3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQVSSPDVD+SYGEPTEML
Sbjct: 480 RVDLLTRQVSSPDVDYSYGEPTEML 406
>gb|AQ956012.1|AQ956012 LERAI30TR LERA Arabidopsis thaliana genomic clone LERAI30, DNA
sequence
Length = 752
Score = 106 bits (227), Expect(2) = 6e-034
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3 / +3
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA++HI+ MS LGEQVG G+P
Sbjct: 522 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAMSHIMQMSNVLGEQVGVGKP 692
Score = 57.4 bits (119), Expect(2) = 6e-034
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -3 / +3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQVSSPDVD+SYGEPTEML
Sbjct: 414 RVDLLTRQVSSPDVDYSYGEPTEML 488
>gb|AF296825.1|F5O24 Arabidopsis thaliana BAC F5O24
Length = 101458
Score = 106 bits (227), Expect(2) = 1e-033
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3 / -2
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA++HI+ MS LGEQVG G+P
Sbjct: 52779 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAMSHIMQMSNVLGEQVGVGKP 52609
Score = 57.4 bits (119), Expect(2) = 1e-033
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -3 / -2
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQVSSPDVD+SYGEPTEML
Sbjct: 52887 RVDLLTRQVSSPDVDYSYGEPTEML 52813
>gb|AY039911.1| Arabidopsis thaliana putative sucrose-phosphate synthase
(At5g20280) mRNA, complete cds
Length = 3494
Score = 106 bits (227), Expect(2) = 1e-033
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3 / +1
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA++HI+ MS LGEQVG G+P
Sbjct: 814 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAMSHIMQMSNVLGEQVGVGKP 984
Score = 57.4 bits (119), Expect(2) = 1e-033
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQVSSPDVD+SYGEPTEML
Sbjct: 706 RVDLLTRQVSSPDVDYSYGEPTEML 780
>ref|NM_122035.1| Arabidopsis thaliana transferase, transferring glycosyl groups
AT5G20280 mRNA, complete cds
Length = 3478
Score = 106 bits (227), Expect(2) = 1e-033
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3 / +1
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA++HI+ MS LGEQVG G+P
Sbjct: 814 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAMSHIMQMSNVLGEQVGVGKP 984
Score = 57.4 bits (119), Expect(2) = 1e-033
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQVSSPDVD+SYGEPTEML
Sbjct: 706 RVDLLTRQVSSPDVDYSYGEPTEML 780
>gb|AY079334.1| Arabidopsis thaliana putative sucrose-phosphate synthase
(At5g20280) mRNA, complete cds
Length = 3163
Score = 106 bits (227), Expect(2) = 1e-033
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3 / +1
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA++HI+ MS LGEQVG G+P
Sbjct: 748 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAMSHIMQMSNVLGEQVGVGKP 918
Score = 57.4 bits (119), Expect(2) = 1e-033
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQVSSPDVD+SYGEPTEML
Sbjct: 640 RVDLLTRQVSSPDVDYSYGEPTEML 714
>emb|CQ805578.1| Sequence 1989 from Patent WO2004035798
Length = 3132
Score = 106 bits (227), Expect(2) = 1e-033
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3 / +1
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA++HI+ MS LGEQVG G+P
Sbjct: 748 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAMSHIMQMSNVLGEQVGVGKP 918
Score = 57.4 bits (119), Expect(2) = 1e-033
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQVSSPDVD+SYGEPTEML
Sbjct: 640 RVDLLTRQVSSPDVDYSYGEPTEML 714
>ref|NM_001036532.1| Arabidopsis thaliana unknown protein AT4G10120 transcript variant
AT4G10120.2 mRNA, complete cds
Length = 3468
Score = 98.2 bits (208), Expect(2) = 8e-030
Identities = 34/55 (61%), Positives = 48/55 (87%)
Frame = -3 / +3
Query: 167 ESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
+S G+YI+RIPCG RDKY+ KE+LWP++ EFVDGAL HI++++++LGEQV G+P
Sbjct: 981 DSCGSYIIRIPCGSRDKYIPKESLWPHIPEFVDGALNHIVSIARSLGEQVNGGKP 1145
Score = 53.3 bits (110), Expect(2) = 8e-030
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -3 / +3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEGMG 168
RVDL TRQ+SSP+VD+SYGEP EML + G
Sbjct: 885 RVDLLTRQISSPEVDYSYGEPVEMLSCPPEGSDSCG 992
>ref|NM_117080.4| Arabidopsis thaliana transferase, transferring glycosyl groups
AT4G10120 transcript variant AT4G10120.1 mRNA, complete
cds
Length = 3457
Score = 98.2 bits (208), Expect(2) = 8e-030
Identities = 34/55 (61%), Positives = 48/55 (87%)
Frame = -3 / +1
Query: 167 ESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
+S G+YI+RIPCG RDKY+ KE+LWP++ EFVDGAL HI++++++LGEQV G+P
Sbjct: 970 DSCGSYIIRIPCGSRDKYIPKESLWPHIPEFVDGALNHIVSIARSLGEQVNGGKP 1134
Score = 53.3 bits (110), Expect(2) = 8e-030
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEGMG 168
RVDL TRQ+SSP+VD+SYGEP EML + G
Sbjct: 874 RVDLLTRQISSPEVDYSYGEPVEMLSCPPEGSDSCG 981
>emb|CQ805456.1| Sequence 1867 from Patent WO2004035798
Length = 3252
Score = 98.2 bits (208), Expect(2) = 8e-030
Identities = 34/55 (61%), Positives = 48/55 (87%)
Frame = -3 / +1
Query: 167 ESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
+S G+YI+RIPCG RDKY+ KE+LWP++ EFVDGAL HI++++++LGEQV G+P
Sbjct: 916 DSCGSYIIRIPCGSRDKYIPKESLWPHIPEFVDGALNHIVSIARSLGEQVNGGKP 1080
Score = 53.3 bits (110), Expect(2) = 8e-030
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEGMG 168
RVDL TRQ+SSP+VD+SYGEP EML + G
Sbjct: 820 RVDLLTRQISSPEVDYSYGEPVEMLSCPPEGSDSCG 927
>dbj|AK220698.1| Arabidopsis thaliana mRNA for sucrose-phosphate synthase - like
protein, complete cds, clone: RAFL21-92-G10
Length = 3462
Score = 98.2 bits (208), Expect(2) = 4e-029
Identities = 34/55 (61%), Positives = 48/55 (87%)
Frame = -3 / +3
Query: 167 ESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
+S G+YI+RIPCG RDKY+ KE+LWP++ EFVDGAL HI++++++LGEQV G+P
Sbjct: 981 DSCGSYIIRIPCGSRDKYIPKESLWPHIPEFVDGALNHIVSIARSLGEQVNGGKP 1145
Score = 51.0 bits (105), Expect(2) = 4e-029
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -3 / +3
Query: 272 VDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEGMG 168
VDL TRQ+SSP+VD+SYGEP EML + G
Sbjct: 888 VDLLTRQISSPEVDYSYGEPVEMLSCPPEGSDSCG 992
>dbj|AK175938.1| Arabidopsis thaliana mRNA for sucrose-phosphate synthase - like
protein, complete cds, clone: RAFL22-62-A14
Length = 3438
Score = 95.0 bits (201), Expect(2) = 1e-028
Identities = 33/55 (60%), Positives = 47/55 (85%)
Frame = -3 / +1
Query: 167 ESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
+S +YI+RIPCG RDKY+ KE+LWP++ EFVDGAL HI++++++LGEQV G+P
Sbjct: 970 DSCDSYIIRIPCGSRDKYIPKESLWPHIPEFVDGALNHIVSIARSLGEQVNGGKP 1134
Score = 52.8 bits (109), Expect(2) = 1e-028
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQ+SSP+VD+SYGEP EML
Sbjct: 874 RVDLLTRQISSPEVDYSYGEPVEML 948
>dbj|AK220923.1| Arabidopsis thaliana mRNA for sucrose-phosphate synthase - like
protein, complete cds, clone: RAFL22-49-M07
Length = 3438
Score = 95.0 bits (201), Expect(2) = 1e-028
Identities = 33/55 (60%), Positives = 47/55 (85%)
Frame = -3 / +1
Query: 167 ESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
+S +YI+RIPCG RDKY+ KE+LWP++ EFVDGAL HI++++++LGEQV G+P
Sbjct: 970 DSCDSYIIRIPCGSRDKYIPKESLWPHIPEFVDGALNHIVSIARSLGEQVNGGKP 1134
Score = 52.8 bits (109), Expect(2) = 1e-028
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQ+SSP+VD+SYGEP EML
Sbjct: 874 RVDLLTRQISSPEVDYSYGEPVEML 948
>dbj|AK221092.1| Arabidopsis thaliana mRNA for sucrose-phosphate synthase - like
protein, complete cds, clone: RAFL22-83-J09
Length = 3438
Score = 95.0 bits (201), Expect(2) = 1e-028
Identities = 33/55 (60%), Positives = 47/55 (85%)
Frame = -3 / +1
Query: 167 ESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
+S +YI+RIPCG RDKY+ KE+LWP++ EFVDGAL HI++++++LGEQV G+P
Sbjct: 970 DSCDSYIIRIPCGSRDKYIPKESLWPHIPEFVDGALNHIVSIARSLGEQVNGGKP 1134
Score = 52.8 bits (109), Expect(2) = 1e-028
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQ+SSP+VD+SYGEP EML
Sbjct: 874 RVDLLTRQISSPEVDYSYGEPVEML 948
>emb|AL360314.1|ATF2I11 Arabidopsis thaliana DNA chromosome 5, BAC clone F2I11 (ESSA
project)
Length = 110992
Score = 98.7 bits (209), Expect(2) = 2e-028
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = -3 / +1
Query: 170 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
GES+GAYI+RIP GP+DKY+ KE LWP++ EFVD AL+HI+ +SK LGEQ+G G+
Sbjct: 346 GESSGAYIIRIPFGPKDKYVPKELLWPHIPEFVDRALSHIMQISKVLGEQIGGGQ 510
Score = 47.8 bits (98), Expect(2) = 2e-028
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQV++PDVD SY EP+EML
Sbjct: 238 RVDLLTRQVTAPDVDSSYSEPSEML 312
>emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project)
Length = 96379
Score = 98.7 bits (209), Expect(2) = 2e-028
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = -3 / +3
Query: 170 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
GES+GAYI+RIP GP+DKY+ KE LWP++ EFVD AL+HI+ +SK LGEQ+G G+
Sbjct: 88725 GESSGAYIIRIPFGPKDKYVPKELLWPHIPEFVDRALSHIMQISKVLGEQIGGGQ 88889
Score = 47.8 bits (98), Expect(2) = 2e-028
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = -3 / +3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQV++PDVD SY EP+EML
Sbjct: 88617 RVDLLTRQVTAPDVDSSYSEPSEML 88691
>ref|NM_121149.3| Arabidopsis thaliana unknown protein AT5G11110 mRNA, complete cds
Length = 3576
Score = 98.7 bits (209), Expect(2) = 2e-028
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = -3 / +3
Query: 170 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
GES+GAYI+RIP GP+DKY+ KE LWP++ EFVD AL+HI+ +SK LGEQ+G G+
Sbjct: 969 GESSGAYIIRIPFGPKDKYVPKELLWPHIPEFVDRALSHIMQISKVLGEQIGGGQ 1133
Score = 47.8 bits (98), Expect(2) = 2e-028
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = -3 / +3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQV++PDVD SY EP+EML
Sbjct: 861 RVDLLTRQVTAPDVDSSYSEPSEML 935
>gb|AY069868.1| Arabidopsis thaliana AT5g11110/T5K6_100 mRNA, complete cds
Length = 2803
Score = 98.7 bits (209), Expect(2) = 2e-028
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = -3 / +1
Query: 170 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
GES+GAYI+RIP GP+DKY+ KE LWP++ EFVD AL+HI+ +SK LGEQ+G G+
Sbjct: 325 GESSGAYIIRIPFGPKDKYVPKELLWPHIPEFVDRALSHIMQISKVLGEQIGGGQ 489
Score = 47.8 bits (98), Expect(2) = 2e-028
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQV++PDVD SY EP+EML
Sbjct: 217 RVDLLTRQVTAPDVDSSYSEPSEML 291
>gb|BT002697.1| Arabidopsis thaliana At5g11110/T5K6_100 gene, complete cds
Length = 2685
Score = 98.7 bits (209), Expect(2) = 2e-028
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = -3 / +1
Query: 170 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
GES+GAYI+RIP GP+DKY+ KE LWP++ EFVD AL+HI+ +SK LGEQ+G G+
Sbjct: 310 GESSGAYIIRIPFGPKDKYVPKELLWPHIPEFVDRALSHIMQISKVLGEQIGGGQ 474
Score = 47.8 bits (98), Expect(2) = 2e-028
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQV++PDVD SY EP+EML
Sbjct: 202 RVDLLTRQVTAPDVDSSYSEPSEML 276
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 123 bits (264), Expect = 2e-027
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = -3 / -3
Query: 185 DGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 6
DG+ GES+GAYI+RIP GPRDKYL KE LWP++QEFVDGALAHILNMSK LGEQ+G G+
Sbjct: 1394778 DGDETGESSGAYIIRIPFGPRDKYLNKEILWPFVQEFVDGALAHILNMSKVLGEQIGKGK 1394599
Query: 5 P 3
P
Sbjct: 1394598 P 1394596
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 65.7 bits (137), Expect(3) = 1e-026
Identities = 22/39 (56%), Positives = 34/39 (87%)
Frame = -3 / +2
Query: 119 KYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
+Y+ KE+LWP++ EFVDGAL HI++++++LGEQV G+P
Sbjct: 2229197 RYIPKESLWPHIPEFVDGALNHIVSIARSLGEQVNGGKP 2229313
Score = 53.3 bits (110), Expect(3) = 1e-026
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -3 / +2
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEGMG 168
RVDL TRQ+SSP+VD+SYGEP EML + G
Sbjct: 2228957 RVDLLTRQISSPEVDYSYGEPVEMLSCPPEGSDSCG 2229064
Score = 39.6 bits (80), Expect(3) = 1e-026
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -3 / +2
Query: 167 ESAGAYIVRIPCGPRDKY 114
+S G+YI+RIPCG RDKY
Sbjct: 2229053 DSCGSYIIRIPCGSRDKY 2229106
>emb|AL161516.2|ATCHRIV28 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 28
Length = 198005
Score = 65.7 bits (137), Expect(3) = 1e-026
Identities = 22/39 (56%), Positives = 34/39 (87%)
Frame = -3 / +2
Query: 119 KYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
+Y+ KE+LWP++ EFVDGAL HI++++++LGEQV G+P
Sbjct: 141704 RYIPKESLWPHIPEFVDGALNHIVSIARSLGEQVNGGKP 141820
Score = 53.3 bits (110), Expect(3) = 1e-026
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -3 / +2
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEGMG 168
RVDL TRQ+SSP+VD+SYGEP EML + G
Sbjct: 141464 RVDLLTRQISSPEVDYSYGEPVEMLSCPPEGSDSCG 141571
Score = 39.6 bits (80), Expect(3) = 1e-026
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -3 / +2
Query: 167 ESAGAYIVRIPCGPRDKY 114
+S G+YI+RIPCG RDKY
Sbjct: 141560 DSCGSYIIRIPCGSRDKY 141613
>emb|AL049487.1|ATF28M11 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M11 (ESSA project)
Length = 85907
Score = 65.7 bits (137), Expect(3) = 1e-026
Identities = 22/39 (56%), Positives = 34/39 (87%)
Frame = -3 / +2
Query: 119 KYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
+Y+ KE+LWP++ EFVDGAL HI++++++LGEQV G+P
Sbjct: 43343 RYIPKESLWPHIPEFVDGALNHIVSIARSLGEQVNGGKP 43459
Score = 53.3 bits (110), Expect(3) = 1e-026
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -3 / +2
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEGMG 168
RVDL TRQ+SSP+VD+SYGEP EML + G
Sbjct: 43103 RVDLLTRQISSPEVDYSYGEPVEMLSCPPEGSDSCG 43210
Score = 39.6 bits (80), Expect(3) = 1e-026
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -3 / +2
Query: 167 ESAGAYIVRIPCGPRDKY 114
+S G+YI+RIPCG RDKY
Sbjct: 43199 DSCGSYIIRIPCGSRDKY 43252
>gb|AV528430.1|AV528430 AV528430 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL08g12R 5', mRNA
sequence
Length = 573
Score = 76.7 bits (161), Expect(2) = 4e-025
Identities = 28/38 (73%), Positives = 34/38 (89%)
Frame = -3 / +3
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGAL 60
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA+
Sbjct: 459 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAM 572
Score = 57.4 bits (119), Expect(2) = 4e-025
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -3 / +3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEML 201
RVDL TRQVSSPDVD+SYGEPTEML
Sbjct: 351 RVDLLTRQVSSPDVDYSYGEPTEML 425
>gb|AV529117.1|AV529117 AV529117 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL27g06R 5', mRNA
sequence
Length = 539
Score = 106 bits (227), Expect = 2e-022
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3 / +2
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA++HI+ MS LGEQVG G+P
Sbjct: 44 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAMSHIMQMSNVLGEQVGVGKP 214
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 106 bits (227), Expect = 2e-022
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3 / -1
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA++HI+ MS LGEQVG G+P
Sbjct: 6562702 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAMSHIMQMSNVLGEQVGVGKP 6562532
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 106 bits (227), Expect = 2e-022
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3 / -2
Query: 173 MGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
MGES+GAYIVRIP GP+DKY+ KE LWP++ EFVDGA++HI+ MS LGEQVG G+P
Sbjct: 6848378 MGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGAMSHIMQMSNVLGEQVGVGKP 6848208
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 613,346,837
Number of Sequences: 1013581
Number of extensions: 7753634
Number of successful extensions: 317152
Number of sequences better than 1.0e-020: 37
length of database: 302,980,290
effective HSP length: 52
effective length of database: 250,274,078
effective search space used: 9760689042
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)