TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.060L08F020610.3.1
(677 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acti... 177 1e-059
emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cD... 177 1e-059
gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 177 1e-059
gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13... 177 1e-059
gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA... 177 1e-059
gb|BX841311.1|BX841311 BX841311 Arabidopsis thaliana Flower... 177 1e-059
gb|AV827337.1|AV827337 AV827337 RAFL9 Arabidopsis thaliana ... 177 1e-059
gb|AY063925.1| Arabidopsis thaliana putative arabinosidase ... 167 1e-056
ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on ... 167 1e-056
gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown pr... 167 1e-056
gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 167 1e-056
gb|AV825043.1|AV825043 AV825043 RAFL6 Arabidopsis thaliana ... 167 2e-056
gb|BE522243.1|BE522243 M24F11STM Arabidopsis developing see... 167 5e-055
emb|BX833642.1|CNS0A0L4 Arabidopsis thaliana Full-length cD... 167 4e-049
gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome II... 99 1e-043
gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24 92 3e-040
gb|BP812382.1|BP812382 BP812382 RAFL19 Arabidopsis thaliana... 130 5e-029
gb|BP853835.1|BP853835 BP853835 RAFL21 Arabidopsis thaliana... 126 6e-028
>ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acting on glycosyl bonds
AT3G10740 (ASD1) mRNA, complete cds
Length = 2427
Score = 177 bits (380), Expect(2) = 1e-059
Identities = 73/100 (73%), Positives = 80/100 (80%)
Frame = +1 / +2
Query: 115 EGQNPSGHLSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPS 294
E P+ L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG NTPS
Sbjct: 350 EDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNTPS 529
Query: 295 NIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSK 414
NI PW I+GD SSI V TDR+SCFERN +ALRM+VLC SK
Sbjct: 530 NIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLCDSK 649
Score = 123 bits (264), Expect(2) = 9e-036
Identities = 54/77 (70%), Positives = 60/77 (77%)
Frame = -1 / -1
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
Q TSI SA RSKHD RSV T + + SP + HG I EGV PPASNPLLLTSSAHNPPA
Sbjct: 639 QSTSILSAILFRSKHDERSVATYMDE*SPTMDHGQILEGVFCPPASNPLLLTSSAHNPPA 460
Query: 224 PAWLISSKKMPNILSGI 174
PAWLISSKK+PN +SG+
Sbjct: 459 PAWLISSKKIPNSVSGM 409
Score = 75.8 bits (159), Expect(2) = 1e-059
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +2
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+ CPSGGVGVYNPGYWGMNIE+GK YKV+L+VR
Sbjct: 644 SKGCPSGGVGVYNPGYWGMNIEEGKKYKVALYVR 745
Score = 48.7 bits (100), Expect(2) = 9e-036
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -3 / -3
Query: 516 NMQAHLINLPLFNVHAPVARIIDPNTSRWT 427
++++HL+ L FN+HAPV R+I+ +TSRWT
Sbjct: 742 HIKSHLVLLSFFNIHAPVTRVINSDTSRWT 653
>emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH14ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2351
Score = 177 bits (380), Expect(2) = 1e-059
Identities = 73/100 (73%), Positives = 80/100 (80%)
Frame = +1 / +3
Query: 115 EGQNPSGHLSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPS 294
E P+ L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG NTPS
Sbjct: 354 EDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNTPS 533
Query: 295 NIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSK 414
NI PW I+GD SSI V TDR+SCFERN +ALRM+VLC SK
Sbjct: 534 NIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLCDSK 653
Score = 123 bits (264), Expect(2) = 9e-036
Identities = 54/77 (70%), Positives = 60/77 (77%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
Q TSI SA RSKHD RSV T + + SP + HG I EGV PPASNPLLLTSSAHNPPA
Sbjct: 643 QSTSILSAILFRSKHDERSVATYMDE*SPTMDHGQILEGVFCPPASNPLLLTSSAHNPPA 464
Query: 224 PAWLISSKKMPNILSGI 174
PAWLISSKK+PN +SG+
Sbjct: 463 PAWLISSKKIPNSVSGM 413
Score = 75.8 bits (159), Expect(2) = 1e-059
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +3
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+ CPSGGVGVYNPGYWGMNIE+GK YKV+L+VR
Sbjct: 648 SKGCPSGGVGVYNPGYWGMNIEEGKKYKVALYVR 749
Score = 48.7 bits (100), Expect(2) = 9e-036
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -3 / -1
Query: 516 NMQAHLINLPLFNVHAPVARIIDPNTSRWT 427
++++HL+ L FN+HAPV R+I+ +TSRWT
Sbjct: 746 HIKSHLVLLSFFNIHAPVTRVINSDTSRWT 657
>gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD1) mRNA,
complete cds
Length = 2312
Score = 177 bits (380), Expect(2) = 1e-059
Identities = 73/100 (73%), Positives = 80/100 (80%)
Frame = +1 / +2
Query: 115 EGQNPSGHLSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPS 294
E P+ L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG NTPS
Sbjct: 311 EDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNTPS 490
Query: 295 NIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSK 414
NI PW I+GD SSI V TDR+SCFERN +ALRM+VLC SK
Sbjct: 491 NIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLCDSK 610
Score = 123 bits (264), Expect(2) = 9e-036
Identities = 54/77 (70%), Positives = 60/77 (77%)
Frame = -1 / -3
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
Q TSI SA RSKHD RSV T + + SP + HG I EGV PPASNPLLLTSSAHNPPA
Sbjct: 600 QSTSILSAILFRSKHDERSVATYMDE*SPTMDHGQILEGVFCPPASNPLLLTSSAHNPPA 421
Query: 224 PAWLISSKKMPNILSGI 174
PAWLISSKK+PN +SG+
Sbjct: 420 PAWLISSKKIPNSVSGM 370
Score = 75.8 bits (159), Expect(2) = 1e-059
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +2
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+ CPSGGVGVYNPGYWGMNIE+GK YKV+L+VR
Sbjct: 605 SKGCPSGGVGVYNPGYWGMNIEEGKKYKVALYVR 706
Score = 48.7 bits (100), Expect(2) = 9e-036
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -3 / -2
Query: 516 NMQAHLINLPLFNVHAPVARIIDPNTSRWT 427
++++HL+ L FN+HAPV R+I+ +TSRWT
Sbjct: 703 HIKSHLVLLSFFNIHAPVTRVINSDTSRWT 614
>gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13_18 mRNA, complete cds
Length = 2254
Score = 177 bits (380), Expect(2) = 1e-059
Identities = 73/100 (73%), Positives = 80/100 (80%)
Frame = +1 / +3
Query: 115 EGQNPSGHLSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPS 294
E P+ L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG NTPS
Sbjct: 177 EDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNTPS 356
Query: 295 NIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSK 414
NI PW I+GD SSI V TDR+SCFERN +ALRM+VLC SK
Sbjct: 357 NIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLCDSK 476
Score = 123 bits (264), Expect(2) = 9e-036
Identities = 54/77 (70%), Positives = 60/77 (77%)
Frame = -1 / -1
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
Q TSI SA RSKHD RSV T + + SP + HG I EGV PPASNPLLLTSSAHNPPA
Sbjct: 466 QSTSILSAILFRSKHDERSVATYMDE*SPTMDHGQILEGVFCPPASNPLLLTSSAHNPPA 287
Query: 224 PAWLISSKKMPNILSGI 174
PAWLISSKK+PN +SG+
Sbjct: 286 PAWLISSKKIPNSVSGM 236
Score = 75.8 bits (159), Expect(2) = 1e-059
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +3
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+ CPSGGVGVYNPGYWGMNIE+GK YKV+L+VR
Sbjct: 471 SKGCPSGGVGVYNPGYWGMNIEEGKKYKVALYVR 572
Score = 48.7 bits (100), Expect(2) = 9e-036
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -3 / -3
Query: 516 NMQAHLINLPLFNVHAPVARIIDPNTSRWT 427
++++HL+ L FN+HAPV R+I+ +TSRWT
Sbjct: 569 HIKSHLVLLSFFNIHAPVTRVINSDTSRWT 480
>gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA, complete cds
Length = 2037
Score = 177 bits (380), Expect(2) = 1e-059
Identities = 73/100 (73%), Positives = 80/100 (80%)
Frame = +1 / +1
Query: 115 EGQNPSGHLSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPS 294
E P+ L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG NTPS
Sbjct: 103 EDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNTPS 282
Query: 295 NIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSK 414
NI PW I+GD SSI V TDR+SCFERN +ALRM+VLC SK
Sbjct: 283 NIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLCDSK 402
Score = 123 bits (264), Expect(2) = 9e-036
Identities = 54/77 (70%), Positives = 60/77 (77%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
Q TSI SA RSKHD RSV T + + SP + HG I EGV PPASNPLLLTSSAHNPPA
Sbjct: 392 QSTSILSAILFRSKHDERSVATYMDE*SPTMDHGQILEGVFCPPASNPLLLTSSAHNPPA 213
Query: 224 PAWLISSKKMPNILSGI 174
PAWLISSKK+PN +SG+
Sbjct: 212 PAWLISSKKIPNSVSGM 162
Score = 75.8 bits (159), Expect(2) = 1e-059
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +1
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+ CPSGGVGVYNPGYWGMNIE+GK YKV+L+VR
Sbjct: 397 SKGCPSGGVGVYNPGYWGMNIEEGKKYKVALYVR 498
Score = 48.7 bits (100), Expect(2) = 9e-036
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -3 / -1
Query: 516 NMQAHLINLPLFNVHAPVARIIDPNTSRWT 427
++++HL+ L FN+HAPV R+I+ +TSRWT
Sbjct: 495 HIKSHLVLLSFFNIHAPVTRVINSDTSRWT 406
>gb|BX841311.1|BX841311 BX841311 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB91ZE06 5PRIM, mRNA sequence
Length = 1098
Score = 177 bits (380), Expect(2) = 1e-059
Identities = 73/100 (73%), Positives = 80/100 (80%)
Frame = +1 / +3
Query: 115 EGQNPSGHLSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPS 294
E P+ L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG NTPS
Sbjct: 162 EDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNTPS 341
Query: 295 NIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSK 414
NI PW I+GD SSI V TDR+SCFERN +ALRM+VLC SK
Sbjct: 342 NIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLCDSK 461
Score = 123 bits (264), Expect(2) = 9e-036
Identities = 54/77 (70%), Positives = 60/77 (77%)
Frame = -1 / -3
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
Q TSI SA RSKHD RSV T + + SP + HG I EGV PPASNPLLLTSSAHNPPA
Sbjct: 451 QSTSILSAILFRSKHDERSVATYMDE*SPTMDHGQILEGVFCPPASNPLLLTSSAHNPPA 272
Query: 224 PAWLISSKKMPNILSGI 174
PAWLISSKK+PN +SG+
Sbjct: 271 PAWLISSKKIPNSVSGM 221
Score = 75.8 bits (159), Expect(2) = 1e-059
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +3
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+ CPSGGVGVYNPGYWGMNIE+GK YKV+L+VR
Sbjct: 456 SKGCPSGGVGVYNPGYWGMNIEEGKKYKVALYVR 557
Score = 48.7 bits (100), Expect(2) = 9e-036
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -3 / -2
Query: 516 NMQAHLINLPLFNVHAPVARIIDPNTSRWT 427
++++HL+ L FN+HAPV R+I+ +TSRWT
Sbjct: 554 HIKSHLVLLSFFNIHAPVTRVINSDTSRWT 465
>gb|AV827337.1|AV827337 AV827337 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-14-D11 5',
mRNA sequence
Length = 602
Score = 177 bits (380), Expect(2) = 1e-059
Identities = 73/100 (73%), Positives = 80/100 (80%)
Frame = +1 / +3
Query: 115 EGQNPSGHLSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPS 294
E P+ L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG NTPS
Sbjct: 177 EDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNTPS 356
Query: 295 NIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSK 414
NI PW I+GD SSI V TDR+SCFERN +ALRM+VLC SK
Sbjct: 357 NIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLCDSK 476
Score = 123 bits (264), Expect(2) = 9e-036
Identities = 54/77 (70%), Positives = 60/77 (77%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
Q TSI SA RSKHD RSV T + + SP + HG I EGV PPASNPLLLTSSAHNPPA
Sbjct: 466 QSTSILSAILFRSKHDERSVATYMDE*SPTMDHGQILEGVFCPPASNPLLLTSSAHNPPA 287
Query: 224 PAWLISSKKMPNILSGI 174
PAWLISSKK+PN +SG+
Sbjct: 286 PAWLISSKKIPNSVSGM 236
Score = 75.8 bits (159), Expect(2) = 1e-059
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +3
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+ CPSGGVGVYNPGYWGMNIE+GK YKV+L+VR
Sbjct: 471 SKGCPSGGVGVYNPGYWGMNIEEGKKYKVALYVR 572
Score = 48.7 bits (100), Expect(2) = 9e-036
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -3 / -1
Query: 516 NMQAHLINLPLFNVHAPVARIIDPNTSRWT 427
++++HL+ L FN+HAPV R+I+ +TSRWT
Sbjct: 569 HIKSHLVLLSFFNIHAPVTRVINSDTSRWT 480
>gb|AY063925.1| Arabidopsis thaliana putative arabinosidase (At5g26120) mRNA,
complete cds
Length = 2219
Score = 167 bits (359), Expect(2) = 1e-056
Identities = 71/91 (78%), Positives = 75/91 (82%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG PSNI PW II
Sbjct: 199 LQVDASNVTRRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQIIPSNIWPWSII 378
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGS 411
GDESSI V TDR+SCFERN +ALRMEVLC S
Sbjct: 379 GDESSIYVVTDRSSCFERNKIALRMEVLCDS 471
Score = 117 bits (251), Expect(2) = 6e-032
Identities = 56/87 (64%), Positives = 65/87 (74%)
Frame = -1 / -1
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A LRSKH+ RSV T + DSSP++ G I EG++ PPASNPLLLTSSAH+PPA
Sbjct: 464 QRTSILRAILLRSKHEERSVTT*MDDSSPIMDQGQILEGMICPPASNPLLLTSSAHSPPA 285
Query: 224 PAWLISSKKMPNILSGIFLAFCGEAST 144
PA ISSKK+PN +SGI EAST
Sbjct: 284 PA*FISSKKIPNRVSGIGRRVTLEAST 204
Score = 74.8 bits (157), Expect(2) = 1e-056
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +1
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+N+CP GGVGVYNPGYWGMNIE+GK YKV L+VR
Sbjct: 469 SNSCPLGGVGVYNPGYWGMNIEEGKKYKVVLYVR 570
Score = 41.8 bits (85), Expect(2) = 6e-032
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = -3 / -3
Query: 504 HLINLPLFNVHAPVARIIDPNTS 436
H I LP FNVHAPV R+I+P++S
Sbjct: 555 HFIFLPFFNVHAPVTRVINPDSS 487
>ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on glycosyl bonds AT5G26120
mRNA, complete cds
Length = 2208
Score = 167 bits (359), Expect(2) = 1e-056
Identities = 71/91 (78%), Positives = 75/91 (82%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG PSNI PW II
Sbjct: 199 LQVDASNVTRRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQIIPSNIWPWSII 378
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGS 411
GDESSI V TDR+SCFERN +ALRMEVLC S
Sbjct: 379 GDESSIYVVTDRSSCFERNKIALRMEVLCDS 471
Score = 117 bits (251), Expect(2) = 6e-032
Identities = 56/87 (64%), Positives = 65/87 (74%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A LRSKH+ RSV T + DSSP++ G I EG++ PPASNPLLLTSSAH+PPA
Sbjct: 464 QRTSILRAILLRSKHEERSVTT*MDDSSPIMDQGQILEGMICPPASNPLLLTSSAHSPPA 285
Query: 224 PAWLISSKKMPNILSGIFLAFCGEAST 144
PA ISSKK+PN +SGI EAST
Sbjct: 284 PA*FISSKKIPNRVSGIGRRVTLEAST 204
Score = 74.8 bits (157), Expect(2) = 1e-056
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +1
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+N+CP GGVGVYNPGYWGMNIE+GK YKV L+VR
Sbjct: 469 SNSCPLGGVGVYNPGYWGMNIEEGKKYKVVLYVR 570
Score = 41.8 bits (85), Expect(2) = 6e-032
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = -3 / -1
Query: 504 HLINLPLFNVHAPVARIIDPNTS 436
H I LP FNVHAPV R+I+P++S
Sbjct: 555 HFIFLPFFNVHAPVTRVINPDSS 487
>gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown protein (At5g26120) mRNA,
complete cds
Length = 2055
Score = 167 bits (359), Expect(2) = 1e-056
Identities = 71/91 (78%), Positives = 75/91 (82%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG PSNI PW II
Sbjct: 124 LQVDASNVTRRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQIIPSNIWPWSII 303
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGS 411
GDESSI V TDR+SCFERN +ALRMEVLC S
Sbjct: 304 GDESSIYVVTDRSSCFERNKIALRMEVLCDS 396
Score = 117 bits (251), Expect(2) = 6e-032
Identities = 56/87 (64%), Positives = 65/87 (74%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A LRSKH+ RSV T + DSSP++ G I EG++ PPASNPLLLTSSAH+PPA
Sbjct: 389 QRTSILRAILLRSKHEERSVTT*MDDSSPIMDQGQILEGMICPPASNPLLLTSSAHSPPA 210
Query: 224 PAWLISSKKMPNILSGIFLAFCGEAST 144
PA ISSKK+PN +SGI EAST
Sbjct: 209 PA*FISSKKIPNRVSGIGRRVTLEAST 129
Score = 74.8 bits (157), Expect(2) = 1e-056
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +1
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+N+CP GGVGVYNPGYWGMNIE+GK YKV L+VR
Sbjct: 394 SNSCPLGGVGVYNPGYWGMNIEEGKKYKVVLYVR 495
Score = 41.8 bits (85), Expect(2) = 6e-032
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = -3 / -1
Query: 504 HLINLPLFNVHAPVARIIDPNTS 436
H I LP FNVHAPV R+I+P++S
Sbjct: 480 HFIFLPFFNVHAPVTRVINPDSS 412
>gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD2) mRNA,
complete cds
Length = 2043
Score = 167 bits (359), Expect(2) = 1e-056
Identities = 71/91 (78%), Positives = 75/91 (82%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG PSNI PW II
Sbjct: 129 LQVDASNVTRRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQIIPSNIWPWSII 308
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGS 411
GDESSI V TDR+SCFERN +ALRMEVLC S
Sbjct: 309 GDESSIYVVTDRSSCFERNKIALRMEVLCDS 401
Score = 117 bits (251), Expect(2) = 6e-032
Identities = 56/87 (64%), Positives = 65/87 (74%)
Frame = -1 / -3
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A LRSKH+ RSV T + DSSP++ G I EG++ PPASNPLLLTSSAH+PPA
Sbjct: 394 QRTSILRAILLRSKHEERSVTT*MDDSSPIMDQGQILEGMICPPASNPLLLTSSAHSPPA 215
Query: 224 PAWLISSKKMPNILSGIFLAFCGEAST 144
PA ISSKK+PN +SGI EAST
Sbjct: 214 PA*FISSKKIPNRVSGIGRRVTLEAST 134
Score = 74.8 bits (157), Expect(2) = 1e-056
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +3
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+N+CP GGVGVYNPGYWGMNIE+GK YKV L+VR
Sbjct: 399 SNSCPLGGVGVYNPGYWGMNIEEGKKYKVVLYVR 500
Score = 41.8 bits (85), Expect(2) = 6e-032
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = -3 / -2
Query: 504 HLINLPLFNVHAPVARIIDPNTS 436
H I LP FNVHAPV R+I+P++S
Sbjct: 485 HFIFLPFFNVHAPVTRVINPDSS 417
>gb|AV825043.1|AV825043 AV825043 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-83-O18 5',
mRNA sequence
Length = 655
Score = 167 bits (359), Expect(2) = 2e-056
Identities = 71/91 (78%), Positives = 75/91 (82%)
Frame = +1 / +2
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG PSNI PW II
Sbjct: 200 LQVDASNVTRRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQIIPSNIWPWSII 379
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGS 411
GDESSI V TDR+SCFERN +ALRMEVLC S
Sbjct: 380 GDESSIYVVTDRSSCFERNKIALRMEVLCDS 472
Score = 117 bits (251), Expect(2) = 6e-032
Identities = 56/87 (64%), Positives = 65/87 (74%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A LRSKH+ RSV T + DSSP++ G I EG++ PPASNPLLLTSSAH+PPA
Sbjct: 465 QRTSILRAILLRSKHEERSVTT*MDDSSPIMDQGQILEGMICPPASNPLLLTSSAHSPPA 286
Query: 224 PAWLISSKKMPNILSGIFLAFCGEAST 144
PA ISSKK+PN +SGI EAST
Sbjct: 285 PA*FISSKKIPNRVSGIGRRVTLEAST 205
Score = 74.8 bits (157), Expect(2) = 2e-056
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1 / +2
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+N+CP GGVGVYNPGYWGMNIE+GK YKV L+VR
Sbjct: 470 SNSCPLGGVGVYNPGYWGMNIEEGKKYKVVLYVR 571
Score = 41.8 bits (85), Expect(2) = 6e-032
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = -3 / -1
Query: 504 HLINLPLFNVHAPVARIIDPNTS 436
H I LP FNVHAPV R+I+P++S
Sbjct: 556 HFIFLPFFNVHAPVTRVINPDSS 488
>gb|BE522243.1|BE522243 M24F11STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M24F11 5', mRNA sequence
Length = 390
Score = 167 bits (359), Expect(2) = 5e-055
Identities = 71/91 (78%), Positives = 75/91 (82%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG PSNI PW II
Sbjct: 25 LQVDASNVTRRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQIIPSNIWPWSII 204
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGS 411
GDESSI V TDR+SCFERN +ALRMEVLC S
Sbjct: 205 GDESSIYVVTDRSSCFERNKIALRMEVLCDS 297
Score = 117 bits (251), Expect(2) = 9e-032
Identities = 56/87 (64%), Positives = 65/87 (74%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A LRSKH+ RSV T + DSSP++ G I EG++ PPASNPLLLTSSAH+PPA
Sbjct: 290 QRTSILRAILLRSKHEERSVTT*MDDSSPIMDQGQILEGMICPPASNPLLLTSSAHSPPA 111
Query: 224 PAWLISSKKMPNILSGIFLAFCGEAST 144
PA ISSKK+PN +SGI EAST
Sbjct: 110 PA*FISSKKIPNRVSGIGRRVTLEAST 30
Score = 69.8 bits (146), Expect(2) = 5e-055
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +1 / +1
Query: 418 TNACPSGGVGVYNPGYWGMNIEKGKVYKVSLH 513
+N+CP GGVGVYNPGYWGMNIEKGK Y V L+
Sbjct: 295 SNSCPLGGVGVYNPGYWGMNIEKGKKYXVVLY 390
Score = 41.4 bits (84), Expect(2) = 9e-032
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = -3 / -1
Query: 504 HLINLPLFNVHAPVARIIDPNTS 436
H I LP FNVHAPV R+I+P++S
Sbjct: 381 HXIFLPFFNVHAPVTRVINPDSS 313
>emb|BX833642.1|CNS0A0L4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL67ZG12 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 588
Score = 167 bits (359), Expect(2) = 4e-049
Identities = 71/91 (78%), Positives = 75/91 (82%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG PSNI PW II
Sbjct: 186 LQVDASNVTRRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQIIPSNIWPWSII 365
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGS 411
GDESSI V TDR+SCFERN +ALRMEVLC S
Sbjct: 366 GDESSIYVVTDRSSCFERNKIALRMEVLCDS 458
Score = 117 bits (251), Expect = 3e-025
Identities = 56/87 (64%), Positives = 65/87 (74%)
Frame = -1 / -3
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A LRSKH+ RSV T + DSSP++ G I EG++ PPASNPLLLTSSAH+PPA
Sbjct: 451 QRTSILRAILLRSKHEERSVTT*MDDSSPIMDQGQILEGMICPPASNPLLLTSSAHSPPA 272
Query: 224 PAWLISSKKMPNILSGIFLAFCGEAST 144
PA ISSKK+PN +SGI EAST
Sbjct: 271 PA*FISSKKIPNRVSGIGRRVTLEAST 191
Score = 50.1 bits (103), Expect(2) = 4e-049
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1 / +3
Query: 418 TNACPSGGVGVYNPGYWGM 474
+N+CP GGVGVYNPGYWGM
Sbjct: 456 SNSCPLGGVGVYNPGYWGM 512
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
complete sequence
Length = 80379
Score = 98.7 bits (209), Expect(4) = 1e-043
Identities = 39/51 (76%), Positives = 43/51 (84%)
Frame = +1 / +2
Query: 262 GFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSK 414
GFEAGG NTPSNI PW I+GD SSI V TDR+SCFERN +ALRM+VLC SK
Sbjct: 52304 GFEAGGQNTPSNIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLCDSK 52456
Score = 62.9 bits (131), Expect(3) = 1e-022
Identities = 29/48 (60%), Positives = 32/48 (66%)
Frame = -1 / -1
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNP 261
Q TSI SA RSKHD RSV T + + SP + HG I EGV PPASNP
Sbjct: 52446 QSTSILSAILFRSKHDERSVATYMDE*SPTMDHGQILEGVFCPPASNP 52303
Score = 49.6 bits (102), Expect(4) = 1e-043
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1 / +2
Query: 418 TNACPSGGVGVYNPGYWGM 474
+ CPSGGVGVYNPGYWGM
Sbjct: 52451 SKGCPSGGVGVYNPGYWGM 52507
Score = 49.6 bits (102), Expect(4) = 1e-043
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1 / +1
Query: 208 EINHAGAGGLWAELVSNRG 264
EINHAGAGGLWAELVSNRG
Sbjct: 52123 EINHAGAGGLWAELVSNRG 52179
Score = 49.6 bits (102), Expect(3) = 1e-022
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -1 / -2
Query: 263 PLLLTSSAHNPPAPAWLIS 207
PLLLTSSAHNPPAPAWLIS
Sbjct: 52178 PLLLTSSAHNPPAPAWLIS 52122
Score = 37.3 bits (75), Expect(4) = 1e-043
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1 / +1
Query: 115 EGQNPSGHLSVDASPQNARKIPDKMFGIFFE 207
E P+ L VDAS R IP+ +FGIFFE
Sbjct: 51937 EDPKPAVTLQVDASNGGGRPIPETLFGIFFE 52029
Score = 33.1 bits (66), Expect(3) = 1e-022
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -3 / -3
Query: 474 HAPVARIIDPNTSRWT 427
HAPV R+I+ +TSRWT
Sbjct: 52507 HAPVTRVINSDTSRWT 52460
>gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24
Length = 127053
Score = 92.3 bits (195), Expect(4) = 3e-040
Identities = 39/50 (78%), Positives = 41/50 (82%)
Frame = +1 / +1
Query: 262 GFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGS 411
GFEAGG PSNI PW IIGDESSI V TDR+SCFERN +ALRMEVLC S
Sbjct: 21289 GFEAGGQIIPSNIWPWSIIGDESSIYVVTDRSSCFERNKIALRMEVLCDS 21438
Score = 53.3 bits (110), Expect(4) = 3e-040
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +1 / +1
Query: 205 EEINHAGAGGLWAELVSNRGF 267
+EINHAGAGGLWAELVSNRGF
Sbjct: 21154 QEINHAGAGGLWAELVSNRGF 21216
Score = 50.1 bits (103), Expect(4) = 3e-040
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1 / +1
Query: 418 TNACPSGGVGVYNPGYWGM 474
+N+CP GGVGVYNPGYWGM
Sbjct: 21436 SNSCPLGGVGVYNPGYWGM 21492
Score = 27.6 bits (54), Expect(4) = 3e-040
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / +1
Query: 475 NIEKGKVYKVSLHVR 519
NIE+GK YKV L+VR
Sbjct: 21577 NIEEGKKYKVVLYVR 21621
>gb|BP812382.1|BP812382 BP812382 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-D18 5',
mRNA sequence
Length = 401
Score = 130 bits (278), Expect = 5e-029
Identities = 54/74 (72%), Positives = 58/74 (78%)
Frame = +1 / +1
Query: 115 EGQNPSGHLSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPS 294
E P+ L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG NTPS
Sbjct: 175 EDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNTPS 354
Query: 295 NIDPWLIIGDESSI 336
NI PW I+GD SSI
Sbjct: 355 NIWPWSIVGDHSSI 396
>gb|BP853835.1|BP853835 BP853835 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-59-J09 5',
mRNA sequence
Length = 393
Score = 126 bits (270), Expect = 6e-028
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = +1 / +2
Query: 115 EGQNPSGHLSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPS 294
E P+ L VDAS R IP+ +FGIFFEEINHAGAGGLWAELVSNRGFEAGG NTPS
Sbjct: 176 EDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNTPS 355
Query: 295 NIDPWLIIGDES 330
NI PW I+GD S
Sbjct: 356 NIWPWSIVGDHS 391
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,481,548,941
Number of Sequences: 1013581
Number of extensions: 21437248
Number of successful extensions: 173116
Number of sequences better than 1.0e-020: 20
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 42029666950
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)