TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.4
(664 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTR... 96 2e-033
gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloarteno... 96 2e-033
gb|AF195648.1| Arabidopsis thaliana sterol methyltransferas... 96 2e-033
gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltrans... 96 2e-033
emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cD... 96 2e-033
gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltrans... 96 2e-033
gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, ... 96 2e-033
emb|CQ804624.1| Sequence 1035 from Patent WO2004035798 96 2e-033
gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence 96 2e-033
gb|CK119751.1|CK119751 201f11.p1 AtM1 Arabidopsis thaliana ... 96 3e-033
gb|AV557319.1|AV557319 AV557319 Arabidopsis thaliana green ... 93 8e-029
gb|AV783910.1|AV783910 AV783910 RAFL5 Arabidopsis thaliana ... 96 1e-023
emb|BX833706.1|CNS0A26T Arabidopsis thaliana Full-length cD... 96 2e-023
dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosom... 74 4e-023
emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cD... 66 6e-023
>ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTRANSFERASE 1) AT5G13710
(SMT1) mRNA, complete cds
Length = 1462
Score = 96.4 bits (204), Expect(3) = 2e-033
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 636 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 788
Score = 61.6 bits (128), Expect(3) = 2e-033
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +3
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N+FDA YAI+ATC+AP+A
Sbjct: 516 AGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 632
Score = 24.4 bits (47), Expect(3) = 2e-033
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +3
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 444 SNSVVTGLNNNEYQITRGK 500
>gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloartenol-C24-methyltransferase (SMT1)
mRNA, complete cds
Length = 1269
Score = 96.4 bits (204), Expect(3) = 2e-033
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 580 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 732
Score = 61.6 bits (128), Expect(3) = 2e-033
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N+FDA YAI+ATC+AP+A
Sbjct: 460 AGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 576
Score = 24.4 bits (47), Expect(3) = 2e-033
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 388 SNSVVTGLNNNEYQITRGK 444
>gb|AF195648.1| Arabidopsis thaliana sterol methyltransferase SMT1 (SMT1) mRNA,
complete cds
Length = 1257
Score = 96.4 bits (204), Expect(3) = 2e-033
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 591 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 743
Score = 61.6 bits (128), Expect(3) = 2e-033
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +3
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N+FDA YAI+ATC+AP+A
Sbjct: 471 AGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 587
Score = 24.4 bits (47), Expect(3) = 2e-033
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +3
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 399 SNSVVTGLNNNEYQITRGK 455
>gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710)
mRNA, complete cds
Length = 1245
Score = 96.4 bits (204), Expect(3) = 2e-033
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +2
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 605 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 757
Score = 61.6 bits (128), Expect(3) = 2e-033
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +2
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N+FDA YAI+ATC+AP+A
Sbjct: 485 AGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 601
Score = 24.4 bits (47), Expect(3) = 2e-033
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +2
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 413 SNSVVTGLNNNEYQITRGK 469
>emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS90ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1198
Score = 96.4 bits (204), Expect(3) = 2e-033
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 564 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 716
Score = 61.6 bits (128), Expect(3) = 2e-033
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +3
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N+FDA YAI+ATC+AP+A
Sbjct: 444 AGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 560
Score = 24.4 bits (47), Expect(3) = 2e-033
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +3
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 372 SNSVVTGLNNNEYQITRGK 428
>gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710)
mRNA, complete cds
Length = 1108
Score = 96.4 bits (204), Expect(3) = 2e-033
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 538 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 690
Score = 61.6 bits (128), Expect(3) = 2e-033
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N+FDA YAI+ATC+AP+A
Sbjct: 418 AGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 534
Score = 24.4 bits (47), Expect(3) = 2e-033
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 346 SNSVVTGLNNNEYQITRGK 402
>gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, complete cds
Length = 1080
Score = 96.4 bits (204), Expect(3) = 2e-033
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 607 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 759
Score = 61.1 bits (127), Expect(3) = 2e-033
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N FDA YAI+ATC+AP+A
Sbjct: 487 AGVDKTCNFVKADFMKMPFPENNFDAVYAIEATCHAPDA 603
Score = 24.9 bits (48), Expect(3) = 2e-033
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 415 SNSAVTGLNNNEYQITRGK 471
>emb|CQ804624.1| Sequence 1035 from Patent WO2004035798
Length = 1011
Score = 96.4 bits (204), Expect(3) = 2e-033
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 538 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 690
Score = 61.6 bits (128), Expect(3) = 2e-033
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N+FDA YAI+ATC+AP+A
Sbjct: 418 AGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 534
Score = 24.4 bits (47), Expect(3) = 2e-033
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 346 SNSVVTGLNNNEYQITRGK 402
>gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence
Length = 1008
Score = 96.4 bits (204), Expect(3) = 2e-033
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 535 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 687
Score = 61.6 bits (128), Expect(3) = 2e-033
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N+FDA YAI+ATC+AP+A
Sbjct: 415 AGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 531
Score = 24.4 bits (47), Expect(3) = 2e-033
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 343 SNSVVTGLNNNEYQITRGK 399
>gb|CK119751.1|CK119751 201f11.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011F11201
5-PRIME, mRNA sequence
Length = 831
Score = 96.4 bits (204), Expect(3) = 3e-033
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 591 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 743
Score = 61.6 bits (128), Expect(3) = 3e-033
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +3
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N+FDA YAI+ATC+AP+A
Sbjct: 471 AGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 587
Score = 24.4 bits (47), Expect(3) = 3e-033
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +3
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 399 SNSVVTGLNNNEYQITRGK 455
>gb|AV557319.1|AV557319 AV557319 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ065f05F 3', mRNA sequence
Length = 538
Score = 92.7 bits (196), Expect(2) = 8e-029
Identities = 35/51 (68%), Positives = 40/51 (78%)
Frame = -2 / +2
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGL DIR
Sbjct: 107 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLTDIR 259
Score = 56.5 bits (117), Expect(2) = 8e-029
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = -2 / +2
Query: 345 CCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
C +K DFM MP +N+FDA YAI+ATC+AP+A
Sbjct: 5 CNFVKADFMKMPFPENSFDAVYAIEATCHAPDA 103
>gb|AV783910.1|AV783910 AV783910 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-14-G19 3',
mRNA sequence
Length = 696
Score = 96.4 bits (204), Expect(2) = 1e-023
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / -1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 642 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 490
Score = 35.4 bits (71), Expect(2) = 1e-023
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -2 / -1
Query: 297 TFDAAYAIQATCYAPEA 247
+FDA YAI+ATC+AP+A
Sbjct: 696 SFDAVYAIEATCHAPDA 646
>emb|BX833706.1|CNS0A26T Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL72ZA01 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 724
Score = 96.4 bits (204), Expect(2) = 2e-023
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / +3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K EIE+GDGLPDIR
Sbjct: 54 GCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 206
Score = 35.0 bits (70), Expect(2) = 2e-023
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -2 / +3
Query: 294 FDAAYAIQATCYAPEA 247
FDA YAI+ATC+AP+A
Sbjct: 3 FDAVYAIEATCHAPDA 50
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
Length = 79259
Score = 73.9 bits (155), Expect(2) = 4e-023
Identities = 27/45 (60%), Positives = 32/45 (71%)
Frame = -2 / -2
Query: 159 QQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIEL 25
Q G Y E+YRVLKPGQ FA EWC+TD FDP+NA+H K + L
Sbjct: 68101 QYGCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKVSVSL 67967
Score = 56.1 bits (116), Expect(2) = 4e-023
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2 / -1
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
L+ DFM MP +N+FDA YAI+ATC+AP+AV
Sbjct: 68267 LQADFMKMPFPENSFDAVYAIEATCHAPDAV 68175
>emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS13ZC03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1283
Score = 66.1 bits (138), Expect(3) = 6e-023
Identities = 28/48 (58%), Positives = 32/48 (66%)
Frame = -2 / +1
Query: 147 YSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDI 4
Y E+ RVL PGQ FA EWC+T F P N+ H K EIE+GDGLP I
Sbjct: 595 YKEI*RVLNPGQCFAAYEWCMTYSFYPYNS*HHKIKGEIEIGDGLPYI 738
Score = 56.5 bits (117), Expect(3) = 6e-023
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ + C +K DFM MP +N+FDA YAI+AT +AP+A
Sbjct: 469 AGVDKTCNFVKADFMKMPFPENSFDAVYAIEATFHAPDA 585
Score = 24.4 bits (47), Expect(3) = 6e-023
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S++ GL N+Y ++RGK
Sbjct: 397 SNSVVTGLNNNEYQITRGK 453
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,121,406,509
Number of Sequences: 1013581
Number of extensions: 15012660
Number of successful extensions: 114462
Number of sequences better than 1.0e-020: 16
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 40793500275
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)