TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.2
(581 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB261810.1|CB261810 86-E8974-008-017-K21-pBl2 MPIZ-ADIS-... 120 2e-034
gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, ... 120 4e-034
gb|AV526630.1|AV526630 AV526630 Arabidopsis thaliana aboveg... 118 5e-034
gb|AV526322.1|AV526322 AV526322 Arabidopsis thaliana aboveg... 118 6e-034
gb|AV540625.1|AV540625 AV540625 Arabidopsis thaliana roots ... 118 6e-034
gb|AV823019.1|AV823019 AV823019 RAFL5 Arabidopsis thaliana ... 118 7e-034
gb|CK119751.1|CK119751 201f11.p1 AtM1 Arabidopsis thaliana ... 118 9e-034
emb|CQ804624.1| Sequence 1035 from Patent WO2004035798 118 1e-033
gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltrans... 118 1e-033
emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cD... 118 1e-033
gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltrans... 118 1e-033
gb|AF195648.1| Arabidopsis thaliana sterol methyltransferas... 118 1e-033
gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloarteno... 118 1e-033
emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cD... 118 1e-033
ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTR... 118 2e-033
gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence 116 7e-033
>gb|CB261810.1|CB261810 86-E8974-008-017-K21-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767K2117Q 5-PRIME, mRNA sequence
Length = 547
Score = 120 bits (256), Expect(2) = 2e-034
Identities = 45/66 (68%), Positives = 59/66 (89%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++++TGL NN+Y
Sbjct: 191 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSAVTGLNNNEY 370
Query: 396 HVSRGK 413
++RGK
Sbjct: 371 QITRGK 388
Score = 89.0 bits (188), Expect(2) = 7e-022
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -2
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 414 STPASRFSSLPLVIWYSLLLSPVTAELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 235
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 234 SCRLILSRSDSPFHL 190
Score = 48.7 bits (100), Expect(2) = 2e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 131 YDLATSFYEYGWGESFHFA 187
Score = 37.7 bits (76), Expect(2) = 7e-022
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 186 AKWKDSPHPYS*KLVARS* 130
>gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, complete cds
Length = 1080
Score = 120 bits (256), Expect(2) = 4e-034
Identities = 45/66 (68%), Positives = 59/66 (89%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++++TGL NN+Y
Sbjct: 274 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSAVTGLNNNEY 453
Query: 396 HVSRGK 413
++RGK
Sbjct: 454 QITRGK 471
Score = 89.0 bits (188), Expect(2) = 1e-021
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -2
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 497 STPASRFSSLPLVIWYSLLLSPVTAELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 318
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 317 SCRLILSRSDSPFHL 273
Score = 48.7 bits (100), Expect(2) = 4e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 214 YDLATSFYEYGWGESFHFA 270
Score = 37.7 bits (76), Expect(2) = 1e-021
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 269 AKWKDSPHPYS*KLVARS* 213
>gb|AV526630.1|AV526630 AV526630 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ17h10R 5', mRNA
sequence
Length = 491
Score = 118 bits (253), Expect(2) = 5e-034
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 271 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 450
Query: 396 HVSRGK 413
++RGK
Sbjct: 451 QITRGK 468
Score = 88.6 bits (187), Expect(2) = 9e-022
Identities = 39/71 (54%), Positives = 48/71 (67%)
Frame = -2 / -1
Query: 427 AKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRL 248
++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC CRL
Sbjct: 482 SRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKCSCRL 303
Query: 247 MASREVSPGYL 215
+ SR SP +L
Sbjct: 302 ILSRSDSPFHL 270
Score = 48.7 bits (100), Expect(2) = 5e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 211 YDLATSFYEYGWGESFHFA 267
Score = 37.7 bits (76), Expect(2) = 9e-022
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -1
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 266 AKWKDSPHPYS*KLVARS* 210
>gb|AV526322.1|AV526322 AV526322 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ10c01R 5', mRNA
sequence
Length = 553
Score = 118 bits (253), Expect(2) = 6e-034
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 271 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 450
Query: 396 HVSRGK 413
++RGK
Sbjct: 451 QITRGK 468
Score = 89.0 bits (188), Expect(2) = 7e-022
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -3
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 494 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 315
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 314 SCRLILSRSDSPFHL 270
Score = 48.7 bits (100), Expect(2) = 6e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 211 YDLATSFYEYGWGESFHFA 267
Score = 37.7 bits (76), Expect(2) = 7e-022
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 266 AKWKDSPHPYS*KLVARS* 210
>gb|AV540625.1|AV540625 AV540625 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ152g09F 3', mRNA sequence
Length = 603
Score = 118 bits (253), Expect(2) = 6e-034
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +3
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 243 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 422
Query: 396 HVSRGK 413
++RGK
Sbjct: 423 QITRGK 440
Score = 89.0 bits (188), Expect(2) = 8e-022
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -3
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 466 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 287
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 286 SCRLILSRSDSPFHL 242
Score = 48.7 bits (100), Expect(2) = 6e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 183 YDLATSFYEYGWGESFHFA 239
Score = 37.7 bits (76), Expect(2) = 8e-022
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 238 AKWKDSPHPYS*KLVARS* 182
>gb|AV823019.1|AV823019 AV823019 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-14-G19 5',
mRNA sequence
Length = 660
Score = 118 bits (253), Expect(2) = 7e-034
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 271 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 450
Query: 396 HVSRGK 413
++RGK
Sbjct: 451 QITRGK 468
Score = 89.0 bits (188), Expect(2) = 9e-022
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -2
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 494 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 315
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 314 SCRLILSRSDSPFHL 270
Score = 48.7 bits (100), Expect(2) = 7e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 211 YDLATSFYEYGWGESFHFA 267
Score = 37.7 bits (76), Expect(2) = 9e-022
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 266 AKWKDSPHPYS*KLVARS* 210
>gb|CK119751.1|CK119751 201f11.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011F11201
5-PRIME, mRNA sequence
Length = 831
Score = 118 bits (253), Expect(2) = 9e-034
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +3
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 258 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 437
Query: 396 HVSRGK 413
++RGK
Sbjct: 438 QITRGK 455
Score = 89.0 bits (188), Expect(2) = 1e-021
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -3
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 481 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 302
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 301 SCRLILSRSDSPFHL 257
Score = 48.7 bits (100), Expect(2) = 9e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 198 YDLATSFYEYGWGESFHFA 254
Score = 37.7 bits (76), Expect(2) = 1e-021
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 253 AKWKDSPHPYS*KLVARS* 197
>emb|CQ804624.1| Sequence 1035 from Patent WO2004035798
Length = 1011
Score = 118 bits (253), Expect(2) = 1e-033
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 205 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 384
Query: 396 HVSRGK 413
++RGK
Sbjct: 385 QITRGK 402
Score = 89.0 bits (188), Expect(2) = 1e-021
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -2
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 428 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 249
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 248 SCRLILSRSDSPFHL 204
Score = 48.7 bits (100), Expect(2) = 1e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 145 YDLATSFYEYGWGESFHFA 201
Score = 37.7 bits (76), Expect(2) = 1e-021
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 200 AKWKDSPHPYS*KLVARS* 144
>gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710)
mRNA, complete cds
Length = 1108
Score = 118 bits (253), Expect(2) = 1e-033
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 205 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 384
Query: 396 HVSRGK 413
++RGK
Sbjct: 385 QITRGK 402
Score = 89.0 bits (188), Expect(2) = 2e-021
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -3
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 428 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 249
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 248 SCRLILSRSDSPFHL 204
Score = 48.7 bits (100), Expect(2) = 1e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 145 YDLATSFYEYGWGESFHFA 201
Score = 37.7 bits (76), Expect(2) = 2e-021
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 200 AKWKDSPHPYS*KLVARS* 144
>emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS90ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1198
Score = 118 bits (253), Expect(2) = 1e-033
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +3
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 231 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 410
Query: 396 HVSRGK 413
++RGK
Sbjct: 411 QITRGK 428
Score = 89.0 bits (188), Expect(2) = 2e-021
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -1
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 454 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 275
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 274 SCRLILSRSDSPFHL 230
Score = 48.7 bits (100), Expect(2) = 1e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 171 YDLATSFYEYGWGESFHFA 227
Score = 37.7 bits (76), Expect(2) = 2e-021
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -1
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 226 AKWKDSPHPYS*KLVARS* 170
>gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710)
mRNA, complete cds
Length = 1245
Score = 118 bits (253), Expect(2) = 1e-033
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 272 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 451
Query: 396 HVSRGK 413
++RGK
Sbjct: 452 QITRGK 469
Score = 89.0 bits (188), Expect(2) = 2e-021
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -1
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 495 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 316
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 315 SCRLILSRSDSPFHL 271
Score = 48.7 bits (100), Expect(2) = 1e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 212 YDLATSFYEYGWGESFHFA 268
Score = 37.7 bits (76), Expect(2) = 2e-021
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -1
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 267 AKWKDSPHPYS*KLVARS* 211
>gb|AF195648.1| Arabidopsis thaliana sterol methyltransferase SMT1 (SMT1) mRNA,
complete cds
Length = 1257
Score = 118 bits (253), Expect(2) = 1e-033
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +3
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 258 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 437
Query: 396 HVSRGK 413
++RGK
Sbjct: 438 QITRGK 455
Score = 89.0 bits (188), Expect(2) = 2e-021
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -3
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 481 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 302
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 301 SCRLILSRSDSPFHL 257
Score = 48.7 bits (100), Expect(2) = 1e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 198 YDLATSFYEYGWGESFHFA 254
Score = 37.7 bits (76), Expect(2) = 2e-021
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 253 AKWKDSPHPYS*KLVARS* 197
>gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloartenol-C24-methyltransferase (SMT1)
mRNA, complete cds
Length = 1269
Score = 118 bits (253), Expect(2) = 1e-033
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 247 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 426
Query: 396 HVSRGK 413
++RGK
Sbjct: 427 QITRGK 444
Score = 89.0 bits (188), Expect(2) = 2e-021
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -2
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 470 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 291
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 290 SCRLILSRSDSPFHL 246
Score = 48.7 bits (100), Expect(2) = 1e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 187 YDLATSFYEYGWGESFHFA 243
Score = 37.7 bits (76), Expect(2) = 2e-021
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 242 AKWKDSPHPYS*KLVARS* 186
>emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS13ZC03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1283
Score = 118 bits (253), Expect(2) = 1e-033
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 256 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 435
Query: 396 HVSRGK 413
++RGK
Sbjct: 436 QITRGK 453
Score = 89.0 bits (188), Expect(2) = 2e-021
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -1
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 479 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 300
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 299 SCRLILSRSDSPFHL 255
Score = 48.7 bits (100), Expect(2) = 1e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 196 YDLATSFYEYGWGESFHFA 252
Score = 37.7 bits (76), Expect(2) = 2e-021
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -1
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 251 AKWKDSPHPYS*KLVARS* 195
>ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTRANSFERASE 1) AT5G13710
(SMT1) mRNA, complete cds
Length = 1462
Score = 118 bits (253), Expect(2) = 2e-033
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +3
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G KVLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 303 RWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 482
Query: 396 HVSRGK 413
++RGK
Sbjct: 483 QITRGK 500
Score = 89.0 bits (188), Expect(2) = 2e-021
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = -2 / -1
Query: 439 SKKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKC 260
S ++ +LPL W SLL++PV LNLAIS+ GPPIPHPTS TF P P+ A KC
Sbjct: 526 STPASRFSSLPLVIWYSLLLSPVTTELLNLAISLNGPPIPHPTSSTFCPGWMPS*RARKC 347
Query: 259 WCRLMASREVSPGYL 215
CRL+ SR SP +L
Sbjct: 346 SCRLILSRSDSPFHL 302
Score = 48.7 bits (100), Expect(2) = 2e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 243 YDLATSFYEYGWGESFHFA 299
Score = 37.7 bits (76), Expect(2) = 2e-021
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -1
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SPHPYS*K V RS*
Sbjct: 298 AKWKDSPHPYS*KLVARS* 242
>gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence
Length = 1008
Score = 116 bits (247), Expect(2) = 7e-033
Identities = 44/66 (66%), Positives = 57/66 (86%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG++ G VLDVGCGIGGPL EIARFS++ +TGL NN+Y
Sbjct: 202 RWKGESLRESIKRHEHFLALQLGIQPGQTVLDVGCGIGGPLREIARFSNSVVTGLNNNEY 381
Query: 396 HVSRGK 413
++RGK
Sbjct: 382 QITRGK 399
Score = 48.7 bits (100), Expect(2) = 7e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 142 YDLATSFYEYGWGESFHFA 198
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,116,023,175
Number of Sequences: 1013581
Number of extensions: 15144625
Number of successful extensions: 192973
Number of sequences better than 1.0e-020: 17
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 34118200230
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)