TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBE1h10.xg.2.1
(463 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_001035770.1| Arabidopsis thaliana hydrolase, hydroly... 118 2e-030
dbj|AK118343.1| Arabidopsis thaliana At3g52600 mRNA for put... 118 2e-030
ref|NM_115120.2| Arabidopsis thaliana hydrolase, hydrolyzin... 118 2e-030
gb|AW004460.1|AW004460 701931666 A. thaliana, mixed source ... 116 2e-027
ref|NM_129177.2| Arabidopsis thaliana hydrolase, hydrolyzin... 116 3e-027
gb|AY084792.1| Arabidopsis thaliana clone 118038 mRNA, comp... 116 3e-027
dbj|AB049617.1| Arabidopsis thaliana AtFruct6 mRNA for beta... 116 3e-027
gb|AV561590.1|AV561590 AV561590 Arabidopsis thaliana green ... 116 3e-027
dbj|AB029310.1| Arabidopsis thaliana AtFruct5 mRNA for beta... 118 8e-026
dbj|AK176675.1| Arabidopsis thaliana mRNA for beta-fructofu... 118 8e-026
ref|NM_104385.2| Arabidopsis thaliana ATFRUCT5 (BETA-FRUCTO... 118 8e-026
gb|AY060553.1| Arabidopsis thaliana AT5g11920/F14F18_90 mRN... 105 4e-025
ref|NM_121230.2| Arabidopsis thaliana hydrolase, hydrolyzin... 105 4e-025
gb|AY141991.1| Arabidopsis thaliana At5g11920/F14F18_90 mRN... 105 4e-025
gb|U11033.1|ATU11033 Arabidopsis thaliana Columbia invertas... 90 4e-024
emb|AL353912.1|ATF3C22 Arabidopsis thaliana DNA chromosome ... 90 4e-021
emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome ... 90 4e-021
>ref|NM_001035770.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT3G52600 transcript variant AT3G52600.2 mRNA, complete
cds
Length = 2320
Score = 118 bits (252), Expect(3) = 2e-030
Identities = 50/81 (61%), Positives = 58/81 (71%)
Frame = +2 / +3
Query: 122 LYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 301
+YKP+F FVD + I+LRSLID S VESFGA GKT I SRVYP+ AVG+ AHL+VF
Sbjct: 1626 MYKPSFAGFVDVGLLDGKISLRSLIDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVF 1805
Query: 302 NNGEXDVTXSGLTAWEMKKPL 364
NNG VT L AW M+KPL
Sbjct: 1806 NNGSQPVTVESLNAWNMQKPL 1868
Score = 26.7 bits (52), Expect(3) = 2e-030
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / +3
Query: 68 KPKVLMCTDPTKXXLSPD 121
KPKVLMC+D L D
Sbjct: 1548 KPKVLMCSDAKPSSLKKD 1601
Score = 26.7 bits (52), Expect(3) = 2e-030
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 5 ASEDLQERXXXFFRVFRD 58
A+ DL+E FFRVF+D
Sbjct: 1482 ATSDLEEYTPVFFRVFKD 1535
>dbj|AK118343.1| Arabidopsis thaliana At3g52600 mRNA for putative
beta-fructofuranosidase, complete cds, clone:
RAFL19-61-I02
Length = 1997
Score = 118 bits (252), Expect(3) = 2e-030
Identities = 50/81 (61%), Positives = 58/81 (71%)
Frame = +2 / +3
Query: 122 LYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 301
+YKP+F FVD + I+LRSLID S VESFGA GKT I SRVYP+ AVG+ AHL+VF
Sbjct: 1593 MYKPSFAGFVDVGLLDGKISLRSLIDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVF 1772
Query: 302 NNGEXDVTXSGLTAWEMKKPL 364
NNG VT L AW M+KPL
Sbjct: 1773 NNGSQPVTVESLNAWNMQKPL 1835
Score = 26.7 bits (52), Expect(3) = 2e-030
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / +3
Query: 68 KPKVLMCTDPTKXXLSPD 121
KPKVLMC+D L D
Sbjct: 1515 KPKVLMCSDAKPSSLKKD 1568
Score = 26.7 bits (52), Expect(3) = 2e-030
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 5 ASEDLQERXXXFFRVFRD 58
A+ DL+E FFRVF+D
Sbjct: 1449 ATSDLEEYTPVFFRVFKD 1502
>ref|NM_115120.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT3G52600 transcript variant AT3G52600.1 mRNA, complete
cds
Length = 1996
Score = 118 bits (252), Expect(3) = 2e-030
Identities = 50/81 (61%), Positives = 58/81 (71%)
Frame = +2 / +3
Query: 122 LYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 301
+YKP+F FVD + I+LRSLID S VESFGA GKT I SRVYP+ AVG+ AHL+VF
Sbjct: 1593 MYKPSFAGFVDVGLLDGKISLRSLIDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVF 1772
Query: 302 NNGEXDVTXSGLTAWEMKKPL 364
NNG VT L AW M+KPL
Sbjct: 1773 NNGSQPVTVESLNAWNMQKPL 1835
Score = 26.7 bits (52), Expect(3) = 2e-030
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / +3
Query: 68 KPKVLMCTDPTKXXLSPD 121
KPKVLMC+D L D
Sbjct: 1515 KPKVLMCSDAKPSSLKKD 1568
Score = 26.7 bits (52), Expect(3) = 2e-030
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 5 ASEDLQERXXXFFRVFRD 58
A+ DL+E FFRVF+D
Sbjct: 1449 ATSDLEEYTPVFFRVFKD 1502
>gb|AW004460.1|AW004460 701931666 A. thaliana, mixed source Arabidopsis thaliana cDNA clone
701931666, mRNA sequence
Length = 387
Score = 116 bits (248), Expect(2) = 2e-027
Identities = 49/80 (61%), Positives = 57/80 (71%)
Frame = +2 / -1
Query: 122 LYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 301
+YKP+F FVD + I+LRSLID S VESFGA GKT I SRVYP+ AVG+ AHL+VF
Sbjct: 282 MYKPSFAGFVDVGLLDGKISLRSLIDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVF 103
Query: 302 NNGEXDVTXSGLTAWEMKKP 361
NNG VT L AW M+KP
Sbjct: 102 NNGSQPVTVESLNAWNMQKP 43
Score = 26.7 bits (52), Expect(2) = 2e-027
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / -1
Query: 68 KPKVLMCTDPTKXXLSPD 121
KPKVLMC+D L D
Sbjct: 360 KPKVLMCSDAKPSSLKKD 307
>ref|NM_129177.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT2G36190 mRNA, complete cds
Length = 2082
Score = 116 bits (248), Expect(2) = 3e-027
Identities = 50/81 (61%), Positives = 58/81 (71%)
Frame = +2 / +2
Query: 122 LYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 301
+YKP+F FVD D++ I+LRSLID S VESFGA GKT I SRVYP AV ++AHLYVF
Sbjct: 1595 MYKPSFAGFVDVDMADGRISLRSLIDHSVVESFGALGKTVITSRVYPVKAVKENAHLYVF 1774
Query: 302 NNGEXDVTXSGLTAWEMKKPL 364
NNG VT L AW M +PL
Sbjct: 1775 NNGTQTVTIESLNAWNMDRPL 1837
Score = 26.7 bits (52), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / +2
Query: 68 KPKVLMCTDPTKXXLSPD 121
KPKVLMC+D L D
Sbjct: 1517 KPKVLMCSDARPSSLKQD 1570
>gb|AY084792.1| Arabidopsis thaliana clone 118038 mRNA, complete sequence
Length = 2079
Score = 116 bits (248), Expect(2) = 3e-027
Identities = 50/81 (61%), Positives = 58/81 (71%)
Frame = +2 / +2
Query: 122 LYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 301
+YKP+F FVD D++ I+LRSLID S VESFGA GKT I SRVYP AV ++AHLYVF
Sbjct: 1595 MYKPSFAGFVDVDMADGRISLRSLIDHSVVESFGALGKTVITSRVYPVKAVKENAHLYVF 1774
Query: 302 NNGEXDVTXSGLTAWEMKKPL 364
NNG VT L AW M +PL
Sbjct: 1775 NNGTQTVTIESLNAWNMDRPL 1837
Score = 26.7 bits (52), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / +2
Query: 68 KPKVLMCTDPTKXXLSPD 121
KPKVLMC+D L D
Sbjct: 1517 KPKVLMCSDARPSSLKQD 1570
>dbj|AB049617.1| Arabidopsis thaliana AtFruct6 mRNA for beta-fructofuranosidase,
complete cds
Length = 1776
Score = 116 bits (248), Expect(2) = 3e-027
Identities = 50/81 (61%), Positives = 58/81 (71%)
Frame = +2 / +1
Query: 122 LYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 301
+YKP+F FVD D++ I+LRSLID S VESFGA GKT I SRVYP AV ++AHLYVF
Sbjct: 1510 MYKPSFAGFVDVDMADGRISLRSLIDHSVVESFGALGKTVITSRVYPVKAVKENAHLYVF 1689
Query: 302 NNGEXDVTXSGLTAWEMKKPL 364
NNG VT L AW M +PL
Sbjct: 1690 NNGTQTVTIESLNAWNMDRPL 1752
Score = 26.7 bits (52), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / +1
Query: 68 KPKVLMCTDPTKXXLSPD 121
KPKVLMC+D L D
Sbjct: 1432 KPKVLMCSDARPSSLKQD 1485
>gb|AV561590.1|AV561590 AV561590 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ154b06F 3', mRNA sequence
Length = 571
Score = 116 bits (248), Expect(2) = 3e-027
Identities = 50/81 (61%), Positives = 58/81 (71%)
Frame = +2 / -3
Query: 122 LYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 301
+YKP+F FVD D++ I+LRSLID S VESFGA GKT I SRVYP AV ++AHLYVF
Sbjct: 488 MYKPSFAGFVDVDMADGRISLRSLIDHSVVESFGALGKTVITSRVYPVKAVKENAHLYVF 309
Query: 302 NNGEXDVTXSGLTAWEMKKPL 364
NNG VT L AW M +PL
Sbjct: 308 NNGTQTVTIESLNAWNMDRPL 246
Score = 26.7 bits (52), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / -3
Query: 68 KPKVLMCTDPTKXXLSPD 121
KPKVLMC+D L D
Sbjct: 566 KPKVLMCSDARPSSLKQD 513
>dbj|AB029310.1| Arabidopsis thaliana AtFruct5 mRNA for beta-fructofuranosidase,
complete cds
Length = 1934
Score = 118 bits (253), Expect = 8e-026
Identities = 49/99 (49%), Positives = 67/99 (67%)
Frame = +2 / +2
Query: 77 VLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRV 256
VLMC+D ++ L+ + K TF FV D S I+LR+LID S VES+G GG+TCI SRV
Sbjct: 1451 VLMCSDQSRSSLNDENDKSTFGAFVAIDPSHQTISLRTLIDHSIVESYGGGGRTCITSRV 1630
Query: 257 YPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMNG 373
YP +A+G++A+L+VFN G V L+AW +K +NG
Sbjct: 1631 YPKLAIGENANLFVFNKGTQSVDILTLSAWSLKSAQING 1747
>dbj|AK176675.1| Arabidopsis thaliana mRNA for beta-fructofuranosidase (AtFruct5),
complete cds, clone: RAFL25-21-E09
Length = 1926
Score = 118 bits (253), Expect = 8e-026
Identities = 49/99 (49%), Positives = 67/99 (67%)
Frame = +2 / +1
Query: 77 VLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRV 256
VLMC+D ++ L+ + K TF FV D S I+LR+LID S VES+G GG+TCI SRV
Sbjct: 1438 VLMCSDQSRSSLNDENDKSTFGAFVAIDPSHQTISLRTLIDHSIVESYGGGGRTCITSRV 1617
Query: 257 YPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMNG 373
YP +A+G++A+L+VFN G V L+AW +K +NG
Sbjct: 1618 YPKLAIGENANLFVFNKGTQSVDILTLSAWSLKSAQING 1734
>ref|NM_104385.2| Arabidopsis thaliana ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5); hydrolase,
hydrolyzing O-glycosyl compounds AT1G55120 (ATFRUCT5)
mRNA, complete cds
Length = 1915
Score = 118 bits (253), Expect = 8e-026
Identities = 49/99 (49%), Positives = 67/99 (67%)
Frame = +2 / +2
Query: 77 VLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRV 256
VLMC+D ++ L+ + K TF FV D S I+LR+LID S VES+G GG+TCI SRV
Sbjct: 1448 VLMCSDQSRSSLNDENDKSTFGAFVAIDPSHQTISLRTLIDHSIVESYGGGGRTCITSRV 1627
Query: 257 YPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMNG 373
YP +A+G++A+L+VFN G V L+AW +K +NG
Sbjct: 1628 YPKLAIGENANLFVFNKGTQSVDILTLSAWSLKSAQING 1744
>gb|AY060553.1| Arabidopsis thaliana AT5g11920/F14F18_90 mRNA, complete cds
Length = 1923
Score = 105 bits (225), Expect(2) = 4e-025
Identities = 44/98 (44%), Positives = 61/98 (62%)
Frame = +2 / +1
Query: 77 VLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRV 256
V+MC+ + L ++ K + F+D D I+LR LID S +ES+G GGKT I SRV
Sbjct: 1441 VVMCSSEKRSSLRDNIKKSSHGAFLDIDPRHEKISLRCLIDHSIIESYGVGGKTVITSRV 1620
Query: 257 YPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMN 370
YP +A+G+ A LYVFN+GE V + L AW M+ +N
Sbjct: 1621 YPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRNAQIN 1734
Score = 29.9 bits (59), Expect(2) = 4e-025
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2 / +1
Query: 5 ASEDLQERXXXFFRVFRDGHGKPKVLMCTD 94
AS DL E+ FF+V R G+G V+ ++
Sbjct: 1372 ASSDLSEQTAIFFKVIRRGNGYAVVMCSSE 1461
>ref|NM_121230.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT5G11920 mRNA, complete cds
Length = 1917
Score = 105 bits (225), Expect(2) = 4e-025
Identities = 44/98 (44%), Positives = 61/98 (62%)
Frame = +2 / +1
Query: 77 VLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRV 256
V+MC+ + L ++ K + F+D D I+LR LID S +ES+G GGKT I SRV
Sbjct: 1441 VVMCSSEKRSSLRDNIKKSSHGAFLDIDPRHEKISLRCLIDHSIIESYGVGGKTVITSRV 1620
Query: 257 YPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMN 370
YP +A+G+ A LYVFN+GE V + L AW M+ +N
Sbjct: 1621 YPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRNAQIN 1734
Score = 29.9 bits (59), Expect(2) = 4e-025
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2 / +1
Query: 5 ASEDLQERXXXFFRVFRDGHGKPKVLMCTD 94
AS DL E+ FF+V R G+G V+ ++
Sbjct: 1372 ASSDLSEQTAIFFKVIRRGNGYAVVMCSSE 1461
>gb|AY141991.1| Arabidopsis thaliana At5g11920/F14F18_90 mRNA, complete cds
Length = 1653
Score = 105 bits (225), Expect(2) = 4e-025
Identities = 44/98 (44%), Positives = 61/98 (62%)
Frame = +2 / +1
Query: 77 VLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRV 256
V+MC+ + L ++ K + F+D D I+LR LID S +ES+G GGKT I SRV
Sbjct: 1342 VVMCSSEKRSSLRDNIKKSSHGAFLDIDPRHEKISLRCLIDHSIIESYGVGGKTVITSRV 1521
Query: 257 YPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMN 370
YP +A+G+ A LYVFN+GE V + L AW M+ +N
Sbjct: 1522 YPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRNAQIN 1635
Score = 29.9 bits (59), Expect(2) = 4e-025
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2 / +1
Query: 5 ASEDLQERXXXFFRVFRDGHGKPKVLMCTD 94
AS DL E+ FF+V R G+G V+ ++
Sbjct: 1273 ASSDLSEQTAIFFKVIRRGNGYAVVMCSSE 1362
>gb|U11033.1|ATU11033 Arabidopsis thaliana Columbia invertase gene, complete cds
Length = 2571
Score = 90.4 bits (191), Expect(4) = 4e-024
Identities = 38/57 (66%), Positives = 42/57 (73%)
Frame = +2 / +2
Query: 194 IDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPL 364
ID S VESFGA GKT I SRVYP+ AVG+ AHL+VFNNG VT L AW M+KPL
Sbjct: 2294 IDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVFNNGSQPVTVESLNAWNMQKPL 2464
Score = 32.2 bits (64), Expect(4) = 4e-024
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2 / +2
Query: 122 LYKPTFXXFVDADISXXXITLRSLI 196
+YKP+F FVD + I+LRSL+
Sbjct: 2138 MYKPSFAGFVDVGLLDGKISLRSLV 2212
Score = 26.7 bits (52), Expect(4) = 4e-024
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 5 ASEDLQERXXXFFRVFRD 58
A+ DL+E FFRVF+D
Sbjct: 1899 ATSDLEEYTPVFFRVFKD 1952
Score = 24.0 bits (46), Expect(4) = 4e-024
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +3
Query: 68 KPKVLMCTD 94
KPKVLMC+D
Sbjct: 1965 KPKVLMCSD 1991
>emb|AL353912.1|ATF3C22 Arabidopsis thaliana DNA chromosome 3, BAC clone F3C22
Length = 100028
Score = 90.4 bits (191), Expect(2) = 4e-021
Identities = 38/57 (66%), Positives = 42/57 (73%)
Frame = +2 / -2
Query: 194 IDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPL 364
ID S VESFGA GKT I SRVYP+ AVG+ AHL+VFNNG VT L AW M+KPL
Sbjct: 27754 IDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVFNNGSQPVTVESLNAWNMQKPL 27584
Score = 32.2 bits (64), Expect(2) = 4e-021
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2 / -2
Query: 122 LYKPTFXXFVDADISXXXITLRSLI 196
+YKP+F FVD + I+LRSL+
Sbjct: 27910 MYKPSFAGFVDVGLLDGKISLRSLV 27836
>emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6
Length = 93443
Score = 90.4 bits (191), Expect(2) = 4e-021
Identities = 38/57 (66%), Positives = 42/57 (73%)
Frame = +2 / -1
Query: 194 IDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPL 364
ID S VESFGA GKT I SRVYP+ AVG+ AHL+VFNNG VT L AW M+KPL
Sbjct: 89471 IDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVFNNGSQPVTVESLNAWNMQKPL 89301
Score = 32.2 bits (64), Expect(2) = 4e-021
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2 / -1
Query: 122 LYKPTFXXFVDADISXXXITLRSLI 196
+YKP+F FVD + I+LRSL+
Sbjct: 89627 MYKPSFAGFVDVGLLDGKISLRSLV 89553
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 539,247,255
Number of Sequences: 1013581
Number of extensions: 4744898
Number of successful extensions: 88436
Number of sequences better than 1.0e-020: 17
length of database: 302,980,290
effective HSP length: 54
effective length of database: 248,246,916
effective search space used: 24576444684
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)