TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAW3d03.yg.2.1
(557 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB049934.1| Arabidopsis thaliana mRNA for cytokinin rec... 147 3e-034
dbj|AB049935.1| Arabidopsis thaliana mRNA for cytokinin rec... 147 3e-034
dbj|AB046871.1| Arabidopsis thaliana AHK4 mRNA for histidin... 147 3e-034
emb|AX537479.1| Sequence 5 from Patent EP1241182 147 3e-034
emb|AJ278528.1|ATH278528 Arabidopsis thaliana mRNA for puta... 147 3e-034
emb|AJ278529.1|ATH278529 Arabidopsis thaliana mRNA for puta... 147 3e-034
emb|AJ278530.1|ATH278530 Arabidopsis thaliana mRNA for puta... 147 3e-034
emb|CS063639.1| Sequence 1 from Patent EP1522586 147 3e-034
ref|NM_126244.2| Arabidopsis thaliana WOL (CYTOKININ RESPON... 147 3e-034
ref|NM_179594.1| Arabidopsis thaliana WOL (CYTOKININ RESPON... 147 3e-034
ref|NM_201667.1| Arabidopsis thaliana WOL (CYTOKININ RESPON... 147 3e-034
dbj|DD159606.1| Transformed Cell co-expressing both of cyto... 147 3e-034
gb|AC007069.6| Arabidopsis thaliana chromosome 2 clone T23K... 110 1e-024
emb|AX508048.1| Sequence 2743 from Patent WO0216655 110 1e-024
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 110 3e-023
>dbj|AB049934.1| Arabidopsis thaliana mRNA for cytokinin receptor CRE1a, complete cds
Length = 3649
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +2
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 950 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1129
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1130 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1309
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1310 TVPLFFAIGFLVG 1348
>dbj|AB049935.1| Arabidopsis thaliana mRNA for cytokinin receptor CRE1b, complete cds
Length = 3694
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +3
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 987 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1166
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1167 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1346
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1347 TVPLFFAIGFLVG 1385
>dbj|AB046871.1| Arabidopsis thaliana AHK4 mRNA for histidine kinase, complete cds
Length = 3243
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +1
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 919 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1098
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1099 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1278
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1279 TVPLFFAIGFLVG 1317
>emb|AX537479.1| Sequence 5 from Patent EP1241182
Length = 3174
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +1
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 850 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1029
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1030 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1209
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1210 TVPLFFAIGFLVG 1248
>emb|AJ278528.1|ATH278528 Arabidopsis thaliana mRNA for putative histidine kinase receptor (wol
gene), splice variant 1
Length = 3620
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +2
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 989 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1168
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1169 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1348
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1349 TVPLFFAIGFLVG 1387
>emb|AJ278529.1|ATH278529 Arabidopsis thaliana mRNA for putative histidine kinase receptor (wol
gene), splice variant 2
Length = 3503
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +2
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 872 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1051
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1052 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1231
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1232 TVPLFFAIGFLVG 1270
>emb|AJ278530.1|ATH278530 Arabidopsis thaliana mRNA for putative histidine kinase receptor (wol
gene), splice variant 3
Length = 3612
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +3
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 981 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1160
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1161 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1340
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1341 TVPLFFAIGFLVG 1379
>emb|CS063639.1| Sequence 1 from Patent EP1522586
Length = 3174
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +1
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 850 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1029
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1030 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1209
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1210 TVPLFFAIGFLVG 1248
>ref|NM_126244.2| Arabidopsis thaliana WOL (CYTOKININ RESPONSE 1) AT2G01830 (WOL)
transcript variant AT2G01830.1 mRNA, complete cds
Length = 3637
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +3
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 984 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1163
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1164 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1343
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1344 TVPLFFAIGFLVG 1382
>ref|NM_179594.1| Arabidopsis thaliana WOL (CYTOKININ RESPONSE 1) AT2G01830 (WOL)
transcript variant AT2G01830.2 mRNA, complete cds
Length = 3658
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +1
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 985 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1164
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1165 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1344
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1345 TVPLFFAIGFLVG 1383
>ref|NM_201667.1| Arabidopsis thaliana WOL (CYTOKININ RESPONSE 1) AT2G01830 (WOL)
transcript variant AT2G01830.3 mRNA, complete cds
Length = 3654
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +3
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 981 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1160
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1161 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1340
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1341 TVPLFFAIGFLVG 1379
>dbj|DD159606.1| Transformed Cell co-expressing both of cytokinin receptor and
cytokinin biosynthesizing enzyme
Length = 3174
Score = 147 bits (315), Expect = 3e-034
Identities = 66/133 (49%), Positives = 82/133 (61%)
Frame = -2 / +1
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
L ++H VV PVY + + E+R AA AG GAFDVESLV N QLAGNQ +V
Sbjct: 850 LETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIV 1029
Query: 220 VNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGDPFRKHHMVCRYRXXPHVPXSAIS 41
V+VYD+TN S+PLVMY ++ S SH LDFGDPFRKH M+CRY +P + ++
Sbjct: 1030 VHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLT 1209
Query: 40 TPSGVFVICMLVG 2
T F I LVG
Sbjct: 1210 TVPLFFAIGFLVG 1248
>gb|AC007069.6| Arabidopsis thaliana chromosome 2 clone T23K3 map mi320, complete
sequence
Length = 73009
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 46/71 (64%), Positives = 53/71 (74%)
Frame = -2 / -1
Query: 289 GAFDVESLVXNXXRQLAGNQXLVVNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGD 110
GAFDVESLV N QLAGNQ +VV+VYD+TN S+PLVMY ++ S SH LDFGD
Sbjct: 12166 GAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGD 11987
Query: 109 PFRKHHMVCRY 77
PFRKH M+CRY
Sbjct: 11986 PFRKHKMICRY 11954
Score = 24.4 bits (47), Expect(2) = 1e-024
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2 / -1
Query: 85 CRYRXXPHVPXSAISTPSGVFVICMLVG 2
CRY +P + ++T F I LVG
Sbjct: 11881 CRYHQKAPIPLNVLTTVPLFFAIGFLVG 11798
>emb|AX508048.1| Sequence 2743 from Patent WO0216655
Length = 2000
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 46/71 (64%), Positives = 53/71 (74%)
Frame = -2 / +3
Query: 289 GAFDVESLVXNXXRQLAGNQXLVVNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGD 110
GAFDVESLV N QLAGNQ +VV+VYD+TN S+PLVMY ++ S SH LDFGD
Sbjct: 1611 GAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGD 1790
Query: 109 PFRKHHMVCRY 77
PFRKH M+CRY
Sbjct: 1791 PFRKHKMICRY 1823
Score = 24.4 bits (47), Expect(2) = 1e-024
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2 / +3
Query: 85 CRYRXXPHVPXSAISTPSGVFVICMLVG 2
CRY +P + ++T F I LVG
Sbjct: 1896 CRYHQKAPIPLNVLTTVPLFFAIGFLVG 1979
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 110 bits (235), Expect = 3e-023
Identities = 46/71 (64%), Positives = 53/71 (74%)
Frame = -2 / -2
Query: 289 GAFDVESLVXNXXRQLAGNQXLVVNVYDVTNISNPLVMYXSEVPLXXPSSSHICMLDFGD 110
GAFDVESLV N QLAGNQ +VV+VYD+TN S+PLVMY ++ S SH LDFGD
Sbjct: 366020 GAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGD 365841
Query: 109 PFRKHHMVCRY 77
PFRKH M+CRY
Sbjct: 365840 PFRKHKMICRY 365808
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 612,702,601
Number of Sequences: 1013581
Number of extensions: 5793561
Number of successful extensions: 65402
Number of sequences better than 1.0e-020: 17
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 32140333550
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)