TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAO3g02.yg.2.1
(344 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY070720.1| Arabidopsis thaliana AT5g25560/T14C9_100 mRN... 74 5e-025
ref|NM_122467.2| Arabidopsis thaliana protein binding / ubi... 74 5e-025
gb|CF651317.1|CF651317 30-E021110-013-001-K07-T7R MPIZ-ADIS... 74 5e-025
gb|AV783078.1|AV783078 AV783078 RAFL5 Arabidopsis thaliana ... 74 5e-025
emb|BX831389.1|CNS0A1NP Arabidopsis thaliana Full-length cD... 70 6e-024
gb|AI996895.1|AI996895 701516501 A. thaliana, Columbia Col-... 66 7e-023
ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein lig... 65 3e-022
gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA... 65 3e-022
gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, compl... 65 3e-022
gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene... 65 3e-022
gb|DQ059131.1| Arabidopsis thaliana RING finger family prot... 65 3e-022
gb|CF651318.1|CF651318 30-E9213-013-001-K07-T7R MPIZ-ADIS-0... 74 4e-022
dbj|AK220658.1| Arabidopsis thaliana mRNA for PGPD14 protei... 65 4e-021
>gb|AY070720.1| Arabidopsis thaliana AT5g25560/T14C9_100 mRNA sequence
Length = 2903
Score = 73.9 bits (155), Expect(2) = 5e-025
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+LF+S NDV+VLP HTIH KCL+EM +H Q+ACPLCS M E+
Sbjct: 2276 FLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 2425
Score = 61.1 bits (127), Expect(2) = 5e-025
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +1 / +2
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++MV+ILCNDCG ++VQ+H++A KC N SYNTR
Sbjct: 2471 NRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTR 2575
>ref|NM_122467.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
zinc ion binding AT5G25560 mRNA, complete cds
Length = 1034
Score = 73.9 bits (155), Expect(2) = 5e-025
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1 / +3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+LF+S NDV+VLP HTIH KCL+EM +H Q+ACPLCS M E+
Sbjct: 720 FLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 869
Score = 61.1 bits (127), Expect(2) = 5e-025
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +1 / +3
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++MV+ILCNDCG ++VQ+H++A KC N SYNTR
Sbjct: 915 NRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTR 1019
>gb|CF651317.1|CF651317 30-E021110-013-001-K07-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770K071Q 5-PRIME, mRNA sequence
Length = 716
Score = 73.9 bits (155), Expect(2) = 5e-025
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1 / +3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+LF+S NDV+VLP HTIH KCL+EM +H Q+ACPLCS M E+
Sbjct: 123 FLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 272
Score = 61.1 bits (127), Expect(2) = 5e-025
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +1 / +3
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++MV+ILCNDCG ++VQ+H++A KC N SYNTR
Sbjct: 318 NRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTR 422
>gb|AV783078.1|AV783078 AV783078 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-05-C04 3',
mRNA sequence
Length = 706
Score = 73.9 bits (155), Expect(2) = 5e-025
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1 / -1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+LF+S NDV+VLP HTIH KCL+EM +H Q+ACPLCS M E+
Sbjct: 628 FLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 479
Score = 61.1 bits (127), Expect(2) = 5e-025
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +1 / -1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++MV+ILCNDCG ++VQ+H++A KC N SYNTR
Sbjct: 433 NRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTR 329
>emb|BX831389.1|CNS0A1NP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS85ZE03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2640
Score = 70.3 bits (147), Expect(2) = 6e-024
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +1 / +3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+L +S NDV+VLP HTIH KCL+EM +H Q+ACPLCS M E+
Sbjct: 2079 FLSESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 2228
Score = 61.1 bits (127), Expect(2) = 6e-024
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +1 / +3
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++MV+ILCNDCG ++VQ+H++A KC N SYNTR
Sbjct: 2274 NRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTR 2378
>gb|AI996895.1|AI996895 701516501 A. thaliana, Columbia Col-0, root-2 Arabidopsis thaliana
cDNA clone 701516501, mRNA sequence
Length = 510
Score = 65.7 bits (137), Expect(2) = 7e-023
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +1 / -1
Query: 34 NDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
NDV+VLP HTIH KCL+EM +H Q+ACPLCS M E+
Sbjct: 510 NDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 379
Score = 61.1 bits (127), Expect(2) = 7e-023
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +1 / -1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++MV+ILCNDCG ++VQ+H++A KC N SYNTR
Sbjct: 333 NRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTR 229
>ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
AT5G22920 mRNA, complete cds
Length = 1262
Score = 65.2 bits (136), Expect(2) = 3e-022
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +1 / +3
Query: 202 DHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++KMV ILCNDCG+ ++V+FHLIAHKC + SYNTR
Sbjct: 849 ENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTR 956
Score = 60.6 bits (126), Expect(2) = 3e-022
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1 / +3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST D++VL HT+H++C K+M H ++ CP+CS M ++L
Sbjct: 657 YLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKL 809
>gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA, complete cds
Length = 1183
Score = 65.2 bits (136), Expect(2) = 3e-022
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +1 / +2
Query: 202 DHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++KMV ILCNDCG+ ++V+FHLIAHKC + SYNTR
Sbjct: 848 ENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTR 955
Score = 60.6 bits (126), Expect(2) = 3e-022
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST D++VL HT+H++C K+M H ++ CP+CS M ++L
Sbjct: 656 YLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKL 808
>gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, complete sequence
Length = 1145
Score = 65.2 bits (136), Expect(2) = 3e-022
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +1 / +2
Query: 202 DHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++KMV ILCNDCG+ ++V+FHLIAHKC + SYNTR
Sbjct: 848 ENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTR 955
Score = 60.6 bits (126), Expect(2) = 3e-022
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST D++VL HT+H++C K+M H ++ CP+CS M ++L
Sbjct: 656 YLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKL 808
>gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene, complete cds
Length = 876
Score = 65.2 bits (136), Expect(2) = 3e-022
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +1 / +1
Query: 202 DHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++KMV ILCNDCG+ ++V+FHLIAHKC + SYNTR
Sbjct: 697 ENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTR 804
Score = 60.6 bits (126), Expect(2) = 3e-022
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST D++VL HT+H++C K+M H ++ CP+CS M ++L
Sbjct: 505 YLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKL 657
>gb|DQ059131.1| Arabidopsis thaliana RING finger family protein (At5g22920) mRNA,
complete cds
Length = 876
Score = 65.2 bits (136), Expect(2) = 3e-022
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +1 / +1
Query: 202 DHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++KMV ILCNDCG+ ++V+FHLIAHKC + SYNTR
Sbjct: 697 ENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTR 804
Score = 60.6 bits (126), Expect(2) = 3e-022
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST D++VL HT+H++C K+M H ++ CP+CS M ++L
Sbjct: 505 YLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKL 657
>gb|CF651318.1|CF651318 30-E9213-013-001-K07-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770K071Q 5-PRIME, mRNA sequence
Length = 477
Score = 73.9 bits (155), Expect(2) = 4e-022
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+LF+S NDV+VLP HTIH KCL+EM +H Q+ACPLCS M E+
Sbjct: 121 FLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 270
Score = 50.1 bits (103), Expect(2) = 4e-022
Identities = 16/28 (57%), Positives = 24/28 (85%)
Frame = +1 / +1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQN 288
++MV+ILCNDCG ++VQ+H++A KC N
Sbjct: 316 NRMVQILCNDCGKKAEVQYHVVAQKCPN 399
>dbj|AK220658.1| Arabidopsis thaliana mRNA for PGPD14 protein, complete cds, clone:
RAFL21-69-N21
Length = 493
Score = 65.2 bits (136), Expect(2) = 4e-021
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +1 / +1
Query: 202 DHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
++KMV ILCNDCG+ ++V+FHLIAHKC + SYNTR
Sbjct: 187 ENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTR 294
Score = 55.6 bits (115), Expect(2) = 4e-021
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +1 / +1
Query: 22 FDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
FDST D++VL HT+H++C K+M H ++ CP+CS M ++L
Sbjct: 1 FDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKL 147
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 550,971,769
Number of Sequences: 1013581
Number of extensions: 4953197
Number of successful extensions: 160822
Number of sequences better than 1.0e-020: 14
length of database: 302,980,290
effective HSP length: 53
effective length of database: 249,260,497
effective search space used: 15204890317
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)