TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF31c07.yg.2.3
         (732 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC012562.5|AC012562  Arabidopsis thaliana chromosome 3 BA...   109   1e-022
dbj|BA000014.8|  Arabidopsis thaliana, chromosome 3, complet...   109   1e-022
ref|NC_003074.4|  Arabidopsis thaliana chromosome 3, complet...   109   1e-022
emb|BX842164.1|CNS09YB9  Arabidopsis thaliana Full-length cD...   105   1e-021
emb|BX824982.1|CNS0A5MB  Arabidopsis thaliana Full-length cD...   105   1e-021
gb|AF543710.1|  Arabidopsis thaliana elongation defective 1 ...   105   1e-021
ref|NM_111689.3|  Arabidopsis thaliana KOB1 (KOBITO) AT3G085...   105   1e-021

>gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BAC F17O14 genomic sequence,
            complete sequence
          Length = 90721

 Score =  109 bits (232), Expect = 1e-022
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2 / +3

                                                            
Query: 389  QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
            QDA MDWI+HLDTDELI+PAGAREYSLRRLLLDVP NVDMVIFPNYVS
Sbjct: 8760 QDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYVS 8903



>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
          Length = 23403063

 Score =  109 bits (232), Expect = 1e-022
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2 / +3

                                                               
Query: 389     QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
               QDA MDWI+HLDTDELI+PAGAREYSLRRLLLDVP NVDMVIFPNYVS
Sbjct: 2593818 QDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYVS 2593961



>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
          Length = 23470805

 Score =  109 bits (232), Expect = 1e-022
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2 / +2

                                                               
Query: 389     QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
               QDA MDWI+HLDTDELI+PAGAREYSLRRLLLDVP NVDMVIFPNYVS
Sbjct: 2597843 QDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYVS 2597986



>emb|BX842164.1|CNS09YB9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH76ZA05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1983

 Score =  105 bits (225), Expect = 1e-021
 Identities = 42/50 (84%), Positives = 47/50 (94%)
 Frame = +2 / +3

                                                             
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
           +++DA MDWI+HLDTDELI+PAGAREYSLRRLLLDVP NVDMVIFPNY S
Sbjct: 798 MARDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYES 947



>emb|BX824982.1|CNS0A5MB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH87ZB12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1752

 Score =  105 bits (225), Expect = 1e-021
 Identities = 42/50 (84%), Positives = 47/50 (94%)
 Frame = +2 / +2

                                                             
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
           +++DA MDWI+HLDTDELI+PAGAREYSLRRLLLDVP NVDMVIFPNY S
Sbjct: 650 MARDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYES 799



>gb|AF543710.1| Arabidopsis thaliana elongation defective 1 (ELD1) mRNA, complete
           cds
          Length = 1626

 Score =  105 bits (225), Expect = 1e-021
 Identities = 42/50 (84%), Positives = 47/50 (94%)
 Frame = +2 / +1

                                                             
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
           +++DA MDWI+HLDTDELI+PAGAREYSLRRLLLDVP NVDMVIFPNY S
Sbjct: 703 MARDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYES 852



>ref|NM_111689.3| Arabidopsis thaliana KOB1 (KOBITO) AT3G08550 (KOB1) mRNA, complete
           cds
          Length = 1991

 Score =  105 bits (225), Expect = 1e-021
 Identities = 42/50 (84%), Positives = 47/50 (94%)
 Frame = +2 / +2

                                                             
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
           +++DA MDWI+HLDTDELI+PAGAREYSLRRLLLDVP NVDMVIFPNY S
Sbjct: 776 MARDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYES 925



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 1,263,911,621
Number of Sequences: 1013581
Number of extensions: 16276442
Number of successful extensions: 113421
Number of sequences better than 1.0e-020: 9
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 46043093998
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)